Wall clock time and date at job start Tue Mar 31 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37100 * 119.99633 * 2 1 4 4 H 1.08004 * 119.99404 * 204.95009 * 3 2 1 5 5 C 1.38950 * 120.00376 * 24.95361 * 3 2 1 6 6 N 1.31412 * 119.99669 * 11.87477 * 5 3 2 7 7 Si 1.86801 * 120.00050 * 191.87495 * 5 3 2 8 8 H 1.48499 * 109.47039 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46824 * 119.99996 * 7 5 3 10 10 H 1.48497 * 109.46755 * 239.99876 * 7 5 3 11 11 C 1.34771 * 120.00094 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00388 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99943 * 0.02562 * 11 2 1 14 14 C 1.53780 * 113.61489 * 180.02562 * 13 11 2 15 15 C 1.53778 * 87.08371 * 89.11233 * 14 13 11 16 16 O 1.42903 * 113.61312 * 270.80043 * 15 14 13 17 17 C 1.52998 * 113.61461 * 139.98658 * 15 14 13 18 18 C 1.52995 * 109.47151 * 186.52827 * 17 15 14 19 19 C 1.53004 * 109.47433 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.46590 * 59.99856 * 19 18 17 21 21 C 1.52998 * 109.47234 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.47145 * 300.00197 * 19 18 17 23 23 C 1.53775 * 87.17399 * 25.38906 * 15 14 13 24 24 H 1.08999 * 109.47435 * 265.32149 * 1 2 3 25 25 H 1.09003 * 109.47306 * 25.32435 * 1 2 3 26 26 H 1.09000 * 109.47129 * 145.31874 * 1 2 3 27 27 H 0.97002 * 119.99769 * 179.97438 * 6 5 3 28 28 H 1.08996 * 112.85090 * 48.79475 * 13 11 2 29 29 H 1.09004 * 113.61223 * 334.56287 * 14 13 11 30 30 H 1.09000 * 113.68964 * 203.67504 * 14 13 11 31 31 H 0.96700 * 113.99874 * 178.47255 * 16 15 14 32 32 H 1.08998 * 109.47329 * 66.52466 * 17 15 14 33 33 H 1.09004 * 109.46671 * 306.52188 * 17 15 14 34 34 H 1.09004 * 109.47015 * 299.99788 * 18 17 15 35 35 H 1.09008 * 109.47314 * 59.99454 * 18 17 15 36 36 H 1.09004 * 109.46961 * 60.00698 * 20 19 18 37 37 H 1.09005 * 109.46781 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47423 * 300.00227 * 20 19 18 39 39 H 1.08998 * 109.47144 * 60.00412 * 21 19 18 40 40 H 1.09002 * 109.46684 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.47374 * 300.00419 * 21 19 18 42 42 H 1.08998 * 109.47053 * 59.99659 * 22 19 18 43 43 H 1.08998 * 109.47053 * 179.97438 * 22 19 18 44 44 H 1.08997 * 109.47061 * 300.00011 * 22 19 18 45 45 H 1.08996 * 113.61076 * 89.15528 * 23 15 14 46 46 H 1.08992 * 113.61793 * 220.06043 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1549 1.2310 -0.3946 5 6 1.5530 2.3345 0.5077 6 7 0.4366 2.2447 1.1950 7 14 2.3368 4.0044 0.2131 8 1 3.5791 3.8347 -0.5825 9 1 1.3877 4.8726 -0.5290 10 1 2.6668 4.6332 1.5173 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.2976 -3.7103 0.0018 15 6 2.2692 -3.6325 1.5373 16 8 3.3017 -2.8123 2.0882 17 6 2.1690 -4.9988 2.2185 18 6 1.9841 -4.8054 3.7248 19 6 1.8833 -6.1717 4.4060 20 6 3.1650 -6.9662 4.1473 21 6 1.6990 -5.9783 5.9124 22 6 0.6858 -6.9370 3.8392 23 6 0.9176 -2.9120 1.3999 24 1 -0.3634 -0.0838 1.0242 25 1 -0.3634 0.9289 -0.4396 26 1 -0.3633 -0.8451 -0.5848 27 1 0.0196 3.0455 1.5497 28 1 0.6010 -2.5082 -0.7554 29 1 3.2831 -3.5269 -0.4265 30 1 1.8218 -4.6053 -0.3990 31 1 3.2748 -2.7406 3.0521 32 1 3.0823 -5.5645 2.0342 33 1 1.3160 -5.5443 1.8148 34 1 2.8371 -4.2598 4.1285 35 1 1.0708 -4.2396 3.9091 36 1 4.0182 -6.4210 4.5511 37 1 3.0935 -7.9395 4.6329 38 1 3.2968 -7.1040 3.0741 39 1 0.7861 -5.4121 6.0970 40 1 1.6267 -6.9517 6.3975 41 1 2.5523 -5.4332 6.3159 42 1 0.8176 -7.0748 2.7661 43 1 0.6143 -7.9106 4.3242 44 1 -0.2273 -6.3710 4.0234 45 1 0.0626 -3.5877 1.3820 46 1 0.7905 -2.0852 2.0986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448837125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:53 Heat of formation + Delta-G solvation = -94.679586 kcal Electronic energy + Delta-G solvation = -23820.149109 eV Core-core repulsion = 20516.490717 eV Total energy + Delta-G solvation = -3303.658392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54317 -39.50954 -38.21494 -36.48847 -35.43143 -33.52621 -31.81565 -28.44892 -28.10891 -28.06274 -27.17164 -26.55722 -25.80338 -23.48460 -21.41926 -19.64599 -19.42109 -18.74947 -17.83029 -17.53173 -16.58700 -16.46206 -16.04591 -15.84519 -15.50911 -15.28748 -14.95826 -14.62533 -14.51556 -14.20596 -13.63528 -13.42570 -13.29818 -13.18371 -13.04635 -12.97526 -12.67326 -12.62220 -12.58303 -12.49698 -12.44810 -12.19413 -12.10335 -11.94224 -11.82827 -11.56667 -11.37970 -11.28824 -10.97124 -10.77521 -10.35213 -10.13522 -9.56320 -8.29944 -5.94242 1.35486 1.38716 1.53072 2.15277 2.29994 3.08650 3.12977 3.32287 3.58668 3.71770 3.85972 3.92947 3.98935 4.08565 4.13570 4.30028 4.44191 4.52018 4.63995 4.74914 4.77657 4.79913 4.86093 4.87190 4.93720 4.95193 4.98634 5.05872 5.08795 5.12629 5.15725 5.21459 5.26977 5.29607 5.32361 5.39058 5.43180 5.47317 5.49085 5.62532 5.63472 6.17052 6.58157 6.98207 7.26108 7.57708 8.19413 8.73733 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.003918 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.997640 B = 7144.883088 C = 7344.757939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.472 5.472 3 C -0.339 4.339 4 H 0.063 0.937 5 C -0.004 4.004 6 N -0.900 5.900 7 Si 0.986 3.014 8 H -0.276 1.276 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.462 3.538 12 O -0.612 6.612 13 C -0.128 4.128 14 C -0.108 4.108 15 C 0.108 3.892 16 O -0.551 6.551 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.066 4.066 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.135 4.135 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.135 0.865 31 H 0.371 0.629 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.128 0.872 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -18.339 5.787 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.192 5.192 3 C -0.467 4.467 4 H 0.081 0.919 5 C -0.205 4.205 6 N -0.540 5.540 7 Si 0.810 3.190 8 H -0.201 1.201 9 H -0.188 1.188 10 H -0.202 1.202 11 C 0.252 3.748 12 O -0.497 6.497 13 C -0.149 4.149 14 C -0.145 4.145 15 C 0.067 3.933 16 O -0.357 6.357 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.066 4.066 20 C -0.201 4.201 21 C -0.200 4.200 22 C -0.200 4.200 23 C -0.173 4.173 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.153 0.847 31 H 0.219 0.781 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.022 -18.125 5.246 19.293 hybrid contribution 0.354 1.417 0.556 1.563 sum -3.667 -16.708 5.803 18.063 Atomic orbital electron populations 1.21314 0.79792 1.00227 1.00023 1.43754 1.06432 1.04519 1.64517 1.19570 1.00409 0.86601 1.40164 0.91880 1.26031 0.97167 1.02745 0.94557 1.70069 1.19784 1.30434 1.33678 0.84993 0.78289 0.77590 0.78149 1.20116 1.18847 1.20172 1.20528 0.87693 0.85769 0.80838 1.90475 1.16052 1.87745 1.55426 1.22243 0.99429 0.92288 1.00954 1.23007 0.99577 0.97118 0.94832 1.22283 0.86717 0.90277 0.93983 1.86822 1.52183 1.71435 1.25248 1.22122 1.03524 0.94728 0.95484 1.21613 1.01464 0.97169 0.94601 1.20500 0.96200 0.94540 0.95332 1.21936 0.96479 0.99790 1.01874 1.21878 1.01464 1.01815 0.94795 1.21926 0.96884 0.99837 1.01326 1.23593 0.99251 1.00186 0.94243 0.94397 0.92862 0.91944 0.91957 0.87532 0.93157 0.84737 0.78113 0.91101 0.88494 0.92945 0.91980 0.93480 0.92087 0.92281 0.92779 0.91957 0.93218 0.91847 0.92248 0.92625 0.85368 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.01 8.44 127.77 1.08 7.09 16 2 N -0.47 -25.84 3.01 -658.88 -1.98 -27.82 16 3 C -0.34 -20.49 9.23 84.04 0.78 -19.71 16 4 H 0.06 4.11 7.45 -2.91 -0.02 4.09 16 5 C 0.00 -0.23 5.06 84.93 0.43 0.20 16 6 N -0.90 -49.77 10.83 21.66 0.23 -49.53 16 7 Si 0.99 44.62 29.57 68.60 2.03 46.65 16 8 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.46 24.07 6.53 87.66 0.57 24.65 16 12 O -0.61 -37.16 14.27 14.61 0.21 -36.96 16 13 C -0.13 -4.73 3.20 -10.95 -0.04 -4.77 16 14 C -0.11 -3.46 6.89 31.12 0.21 -3.24 16 15 C 0.11 3.30 1.37 -10.27 -0.01 3.29 16 16 O -0.55 -21.90 11.48 -131.30 -1.51 -23.41 16 17 C -0.12 -2.53 4.13 30.59 0.13 -2.41 16 18 C -0.11 -2.17 3.86 30.59 0.12 -2.05 16 19 C -0.07 -1.04 0.80 -52.18 -0.04 -1.08 16 20 C -0.14 -2.25 8.12 71.98 0.58 -1.67 16 21 C -0.14 -2.19 8.47 71.98 0.61 -1.58 16 22 C -0.14 -1.94 8.12 71.98 0.58 -1.36 16 23 C -0.13 -4.13 6.82 31.18 0.21 -3.92 16 24 H 0.04 1.79 7.84 -2.39 -0.02 1.77 16 25 H 0.05 2.62 6.78 -2.39 -0.02 2.60 16 26 H 0.06 2.33 6.42 -2.39 -0.02 2.31 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.11 3.38 6.97 -2.39 -0.02 3.36 16 29 H 0.05 2.00 7.43 -2.39 -0.02 1.98 16 30 H 0.13 2.96 8.10 -2.39 -0.02 2.94 16 31 H 0.37 12.21 7.23 -74.06 -0.54 11.68 16 32 H 0.07 1.51 6.43 -2.39 -0.02 1.49 16 33 H 0.10 1.59 6.37 -2.38 -0.02 1.58 16 34 H 0.05 1.12 6.76 -2.39 -0.02 1.11 16 35 H 0.06 1.26 7.99 -2.38 -0.02 1.24 16 36 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.06 0.93 6.43 -2.39 -0.02 0.91 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.13 2.80 8.06 -2.39 -0.02 2.78 16 46 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 Total: -1.00 -75.18 351.61 4.62 -70.56 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.42 Total: 27.07 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 5.22 Total: -6.57 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.75 Total: -77.35 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -1.30 Total: -60.36 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.18 4.62 -70.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448837125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.119 kcal (2) G-P(sol) polarization free energy of solvation -75.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds