Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 C 1.53003 * 109.47637 * 239.99196 * 2 1 3 5 5 C 1.53008 * 109.47007 * 119.99231 * 2 1 3 6 6 N 1.46502 * 109.46597 * 53.89457 * 5 2 1 7 7 C 1.46505 * 120.00000 * 275.78398 * 6 5 2 8 8 C 1.50701 * 109.47288 * 270.00653 * 7 6 5 9 9 H 1.07996 * 119.99809 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00068 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99558 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99924 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47037 * 90.00111 * 12 10 8 14 14 H 1.48500 * 109.47008 * 210.00005 * 12 10 8 15 15 H 1.48498 * 109.47146 * 329.99742 * 12 10 8 16 16 C 1.34773 * 120.00254 * 95.78954 * 6 5 2 17 17 O 1.21281 * 120.00481 * 185.55087 * 16 6 5 18 18 C 1.50707 * 119.99790 * 5.55458 * 16 6 5 19 19 C 1.52991 * 109.46981 * 187.39808 * 18 16 6 20 20 O 1.42906 * 112.85275 * 53.80286 * 19 18 16 21 21 C 1.53789 * 113.61641 * 282.49813 * 19 18 16 22 22 C 1.53787 * 87.08044 * 220.01787 * 21 19 18 23 23 C 1.53784 * 113.61527 * 184.99879 * 19 18 16 24 24 H 1.08997 * 109.47371 * 300.00566 * 1 2 3 25 25 H 1.09008 * 109.46442 * 60.00758 * 1 2 3 26 26 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47484 * 179.97438 * 3 2 1 28 28 H 1.09008 * 109.46772 * 299.99040 * 3 2 1 29 29 H 1.08997 * 109.47388 * 59.99444 * 3 2 1 30 30 H 1.08994 * 109.46729 * 296.56620 * 4 2 1 31 31 H 1.08997 * 109.46455 * 56.56747 * 4 2 1 32 32 H 1.09004 * 109.46918 * 176.56595 * 4 2 1 33 33 H 1.09001 * 109.47059 * 293.89927 * 5 2 1 34 34 H 1.08994 * 109.46998 * 173.88966 * 5 2 1 35 35 H 1.09004 * 109.46765 * 30.00588 * 7 6 5 36 36 H 1.09001 * 109.47190 * 150.00362 * 7 6 5 37 37 H 0.96998 * 119.99681 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.46847 * 307.39701 * 18 16 6 39 39 H 1.09000 * 109.46792 * 67.39575 * 18 16 6 40 40 H 0.96692 * 113.99574 * 309.66898 * 20 19 18 41 41 H 1.09002 * 113.61161 * 334.56304 * 21 19 18 42 42 H 1.08996 * 113.61607 * 105.47082 * 21 19 18 43 43 H 1.08995 * 113.61743 * 270.88383 * 22 21 19 44 44 H 1.08997 * 113.68567 * 139.98887 * 22 21 19 45 45 H 1.08998 * 113.61714 * 254.52916 * 23 19 18 46 46 H 1.09002 * 113.61337 * 25.35025 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0399 -0.7211 1.2494 6 7 1.4353 -2.0534 1.3252 7 6 0.1075 -2.2224 1.9209 8 6 0.2491 -2.4786 3.3992 9 1 1.2300 -2.5127 3.8498 10 6 -0.8736 -2.6707 4.1762 11 7 -2.0680 -2.6298 3.6273 12 14 -0.6980 -2.9890 6.0085 13 1 -0.7172 -1.6966 6.7395 14 1 -1.8245 -3.8375 6.4736 15 1 0.5871 -3.6861 6.2689 16 6 2.1004 -3.1236 0.8470 17 8 1.5610 -4.2094 0.8173 18 6 3.5147 -2.9710 0.3492 19 6 3.9695 -4.2780 -0.3031 20 8 3.0754 -4.7303 -1.3220 21 6 4.3559 -5.3697 0.7089 22 6 5.5208 -5.7195 -0.2323 23 6 5.4447 -4.2690 -0.7376 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8902 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8902 29 1 1.6766 1.9564 0.8899 30 1 1.7279 -1.7653 -1.2187 31 1 1.6274 -0.2444 -2.1380 32 1 3.1284 -0.6683 -1.2803 33 1 1.7685 -0.1480 2.1360 34 1 3.1244 -0.8168 1.1964 35 1 -0.4791 -1.3173 1.7636 36 1 -0.3961 -3.0678 1.4522 37 1 -2.8578 -2.7645 4.1740 38 1 3.5569 -2.1653 -0.3837 39 1 4.1712 -2.7351 1.1867 40 1 2.1489 -4.7604 -1.0472 41 1 4.6770 -4.9768 1.6736 42 1 3.6144 -6.1634 0.7994 43 1 5.2631 -6.4597 -0.9897 44 1 6.4496 -5.9522 0.2884 45 1 5.5820 -4.1741 -1.8147 46 1 6.0630 -3.5742 -0.1692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448915580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = -77.136645 kcal Electronic energy + Delta-G solvation = -24484.816359 eV Core-core repulsion = 21181.918686 eV Total energy + Delta-G solvation = -3302.897673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22199 -38.68252 -36.92702 -34.28241 -33.79658 -32.45027 -30.41436 -27.64066 -27.11623 -26.79663 -25.57584 -25.49775 -23.61344 -22.09320 -19.43705 -19.29764 -18.03339 -16.66970 -16.55774 -16.04171 -15.46360 -15.31328 -14.77588 -14.67746 -14.31816 -13.90187 -13.75090 -13.65161 -13.01343 -12.68232 -12.58836 -12.28182 -12.13465 -12.07065 -11.76374 -11.41492 -11.38189 -11.32738 -11.12138 -11.03759 -10.94400 -10.84410 -10.70077 -10.59114 -10.44946 -10.22877 -10.16353 -10.07394 -9.57463 -9.35110 -8.88868 -8.43487 -7.65025 -6.06303 -4.10715 3.27541 3.31828 3.35225 3.39964 3.88521 4.30056 4.42640 4.72285 4.76761 4.94845 4.99286 5.01056 5.02256 5.17379 5.27528 5.41091 5.52693 5.60637 5.67512 5.71351 5.74312 5.76976 5.83656 5.85522 5.93768 5.97285 6.01540 6.13045 6.15068 6.23476 6.30365 6.32570 6.41167 6.43409 6.50935 6.57600 6.76473 7.08368 7.42993 7.52386 7.90022 8.03779 8.22779 8.40236 8.87053 9.04767 9.54159 11.01457 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.006585 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.759477 B = 4251.252728 C = 5737.694042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.237 3.763 8 C -0.527 4.527 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.511 3.489 17 O -0.549 6.549 18 C -0.176 4.176 19 C 0.133 3.867 20 O -0.551 6.551 21 C -0.158 4.158 22 C -0.136 4.136 23 C -0.128 4.128 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.390 0.610 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.556 4.660 -8.464 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.006 4.006 6 N -0.319 5.319 7 C 0.118 3.882 8 C -0.566 4.566 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.299 3.701 17 O -0.429 6.429 18 C -0.216 4.216 19 C 0.091 3.909 20 O -0.362 6.362 21 C -0.196 4.196 22 C -0.173 4.173 23 C -0.166 4.166 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.570 4.038 -8.750 15.839 hybrid contribution -0.521 0.031 1.558 1.643 sum 12.049 4.070 -7.192 14.611 Atomic orbital electron populations 1.22045 0.93798 1.03216 1.00949 1.20996 0.97009 0.95114 0.95700 1.21807 1.00482 0.95369 1.01829 1.22007 0.99967 1.00952 0.97028 1.21554 0.96800 0.84697 0.97520 1.48175 1.20592 1.05368 1.57739 1.19527 0.77502 0.98598 0.92593 1.21450 0.92822 1.49233 0.93115 0.92669 1.24911 0.95133 0.95216 0.98747 1.69926 0.97573 1.49861 1.35890 0.86536 0.77806 0.78146 0.85172 1.20667 1.21097 1.19975 1.20278 0.87371 0.84574 0.77915 1.90566 1.69473 1.25998 1.56833 1.22629 0.96150 1.00522 1.02264 1.21722 0.89680 0.91145 0.88389 1.86254 1.22509 1.88605 1.38877 1.23530 0.98361 1.00051 0.97668 1.22755 0.98507 0.96617 0.99447 1.23046 0.94061 0.97642 1.01820 0.92239 0.93728 0.91028 0.92920 0.92740 0.92429 0.92270 0.92860 0.92875 0.90154 0.91528 0.93633 0.93956 0.92740 0.88164 0.88657 0.75578 0.89988 0.90492 0.90067 0.91777 0.90844 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 6.97 37.15 0.26 -1.97 16 2 C -0.09 -1.18 0.85 -154.51 -0.13 -1.31 16 3 C -0.14 -1.50 8.47 37.16 0.31 -1.19 16 4 C -0.14 -1.83 6.93 37.16 0.26 -1.57 16 5 C 0.12 1.86 4.55 -4.04 -0.02 1.84 16 6 N -0.59 -11.71 1.98 -175.05 -0.35 -12.06 16 7 C 0.24 5.90 3.92 -5.19 -0.02 5.88 16 8 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 12 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.51 9.99 5.95 -10.98 -0.07 9.92 16 17 O -0.55 -12.71 13.32 -12.49 -0.17 -12.87 16 18 C -0.18 -2.60 3.55 -27.88 -0.10 -2.70 16 19 C 0.13 1.98 1.09 -89.81 -0.10 1.88 16 20 O -0.55 -9.33 13.39 -53.28 -0.71 -10.04 16 21 C -0.16 -2.35 7.00 -25.91 -0.18 -2.53 16 22 C -0.14 -1.66 8.02 -25.91 -0.21 -1.86 16 23 C -0.13 -1.52 7.47 -25.91 -0.19 -1.72 16 24 H 0.06 0.98 7.69 -51.93 -0.40 0.58 16 25 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.07 1.32 5.77 -51.93 -0.30 1.02 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.89 6.12 -51.93 -0.32 0.57 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.59 6.86 -51.93 -0.36 0.24 16 33 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 34 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 35 H 0.05 1.14 5.32 -51.93 -0.28 0.86 16 36 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 1.31 4.26 -51.93 -0.22 1.09 16 39 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 40 H 0.39 7.03 6.46 45.56 0.29 7.32 16 41 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -30.71 350.13 -8.14 -38.86 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.30 Total: 8.17 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.60 Total: -8.58 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.39 Total: -37.42 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.88 Total: -22.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.71 -8.14 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448915580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.281 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds