Wall clock time and date at job start Tue Mar 31 2020 06:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 C 1.53003 * 109.47637 * 239.99196 * 2 1 3 5 5 C 1.53008 * 109.47007 * 119.99231 * 2 1 3 6 6 N 1.46502 * 109.46597 * 53.89457 * 5 2 1 7 7 C 1.46505 * 120.00000 * 275.78398 * 6 5 2 8 8 C 1.50701 * 109.47288 * 270.00653 * 7 6 5 9 9 H 1.07996 * 119.99809 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00068 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99558 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99924 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47037 * 90.00111 * 12 10 8 14 14 H 1.48500 * 109.47008 * 210.00005 * 12 10 8 15 15 H 1.48498 * 109.47146 * 329.99742 * 12 10 8 16 16 C 1.34773 * 120.00254 * 95.78954 * 6 5 2 17 17 O 1.21281 * 120.00481 * 185.55087 * 16 6 5 18 18 C 1.50707 * 119.99790 * 5.55458 * 16 6 5 19 19 C 1.52991 * 109.46981 * 187.39808 * 18 16 6 20 20 O 1.42906 * 112.85275 * 53.80286 * 19 18 16 21 21 C 1.53789 * 113.61641 * 282.49813 * 19 18 16 22 22 C 1.53787 * 87.08044 * 220.01787 * 21 19 18 23 23 C 1.53784 * 113.61527 * 184.99879 * 19 18 16 24 24 H 1.08997 * 109.47371 * 300.00566 * 1 2 3 25 25 H 1.09008 * 109.46442 * 60.00758 * 1 2 3 26 26 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47484 * 179.97438 * 3 2 1 28 28 H 1.09008 * 109.46772 * 299.99040 * 3 2 1 29 29 H 1.08997 * 109.47388 * 59.99444 * 3 2 1 30 30 H 1.08994 * 109.46729 * 296.56620 * 4 2 1 31 31 H 1.08997 * 109.46455 * 56.56747 * 4 2 1 32 32 H 1.09004 * 109.46918 * 176.56595 * 4 2 1 33 33 H 1.09001 * 109.47059 * 293.89927 * 5 2 1 34 34 H 1.08994 * 109.46998 * 173.88966 * 5 2 1 35 35 H 1.09004 * 109.46765 * 30.00588 * 7 6 5 36 36 H 1.09001 * 109.47190 * 150.00362 * 7 6 5 37 37 H 0.96998 * 119.99681 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.46847 * 307.39701 * 18 16 6 39 39 H 1.09000 * 109.46792 * 67.39575 * 18 16 6 40 40 H 0.96692 * 113.99574 * 309.66898 * 20 19 18 41 41 H 1.09002 * 113.61161 * 334.56304 * 21 19 18 42 42 H 1.08996 * 113.61607 * 105.47082 * 21 19 18 43 43 H 1.08995 * 113.61743 * 270.88383 * 22 21 19 44 44 H 1.08997 * 113.68567 * 139.98887 * 22 21 19 45 45 H 1.08998 * 113.61714 * 254.52916 * 23 19 18 46 46 H 1.09002 * 113.61337 * 25.35025 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0399 -0.7211 1.2494 6 7 1.4353 -2.0534 1.3252 7 6 0.1075 -2.2224 1.9209 8 6 0.2491 -2.4786 3.3992 9 1 1.2300 -2.5127 3.8498 10 6 -0.8736 -2.6707 4.1762 11 7 -2.0680 -2.6298 3.6273 12 14 -0.6980 -2.9890 6.0085 13 1 -0.7172 -1.6966 6.7395 14 1 -1.8245 -3.8375 6.4736 15 1 0.5871 -3.6861 6.2689 16 6 2.1004 -3.1236 0.8470 17 8 1.5610 -4.2094 0.8173 18 6 3.5147 -2.9710 0.3492 19 6 3.9695 -4.2780 -0.3031 20 8 3.0754 -4.7303 -1.3220 21 6 4.3559 -5.3697 0.7089 22 6 5.5208 -5.7195 -0.2323 23 6 5.4447 -4.2690 -0.7376 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8902 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8902 29 1 1.6766 1.9564 0.8899 30 1 1.7279 -1.7653 -1.2187 31 1 1.6274 -0.2444 -2.1380 32 1 3.1284 -0.6683 -1.2803 33 1 1.7685 -0.1480 2.1360 34 1 3.1244 -0.8168 1.1964 35 1 -0.4791 -1.3173 1.7636 36 1 -0.3961 -3.0678 1.4522 37 1 -2.8578 -2.7645 4.1740 38 1 3.5569 -2.1653 -0.3837 39 1 4.1712 -2.7351 1.1867 40 1 2.1489 -4.7604 -1.0472 41 1 4.6770 -4.9768 1.6736 42 1 3.6144 -6.1634 0.7994 43 1 5.2631 -6.4597 -0.9897 44 1 6.4496 -5.9522 0.2884 45 1 5.5820 -4.1741 -1.8147 46 1 6.0630 -3.5742 -0.1692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448915580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:48 Heat of formation + Delta-G solvation = -95.890235 kcal Electronic energy + Delta-G solvation = -24485.629576 eV Core-core repulsion = 21181.918686 eV Total energy + Delta-G solvation = -3303.710890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57999 -39.92866 -38.29887 -35.71690 -35.34397 -34.32404 -31.84539 -29.34074 -28.11447 -28.08484 -26.92862 -26.61040 -25.20959 -23.60771 -20.66066 -20.52695 -19.38772 -18.68274 -18.01987 -17.35830 -16.98686 -16.78884 -16.32538 -15.92029 -15.67576 -15.17131 -14.99243 -14.82365 -14.49299 -14.28125 -13.88628 -13.62748 -13.54071 -13.22953 -13.12493 -12.95982 -12.80357 -12.65984 -12.55701 -12.48816 -12.26600 -12.14402 -12.08743 -11.93542 -11.74412 -11.69068 -11.55222 -11.41056 -11.23474 -10.61831 -10.51885 -10.45358 -9.33962 -8.21466 -6.35719 1.34365 1.37133 1.46869 1.81926 2.30331 2.46083 3.07803 3.15317 3.53444 3.68548 3.78194 3.88356 3.90616 3.94177 4.08450 4.22358 4.43896 4.49327 4.56438 4.61899 4.68935 4.77706 4.81314 4.82644 4.86911 4.94384 4.96145 5.07499 5.08910 5.11287 5.14395 5.18120 5.22401 5.26816 5.36967 5.38748 5.45792 5.47571 5.54566 5.61275 5.89247 6.10269 6.66103 6.71956 6.84688 7.29379 7.50111 8.84765 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.006585 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.759477 B = 4251.252728 C = 5737.694042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.139 4.139 5 C 0.112 3.888 6 N -0.592 5.592 7 C 0.257 3.743 8 C -0.542 4.542 9 H 0.051 0.949 10 C 0.009 3.991 11 N -0.927 5.927 12 Si 0.963 3.037 13 H -0.264 1.264 14 H -0.283 1.283 15 H -0.273 1.273 16 C 0.502 3.498 17 O -0.596 6.596 18 C -0.160 4.160 19 C 0.113 3.887 20 O -0.562 6.562 21 C -0.171 4.171 22 C -0.128 4.128 23 C -0.110 4.110 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.040 0.960 36 H -0.009 1.009 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.381 0.619 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.931 6.522 -8.492 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.196 4.196 5 C -0.011 4.011 6 N -0.321 5.321 7 C 0.136 3.864 8 C -0.581 4.581 9 H 0.070 0.930 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.787 3.213 13 H -0.189 1.189 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.292 3.708 17 O -0.479 6.479 18 C -0.200 4.200 19 C 0.072 3.928 20 O -0.372 6.372 21 C -0.208 4.208 22 C -0.165 4.165 23 C -0.147 4.147 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.009 0.991 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.987 5.937 -8.793 19.187 hybrid contribution -1.629 -0.574 1.534 2.309 sum 14.358 5.364 -7.259 16.960 Atomic orbital electron populations 1.21982 0.96058 1.00614 1.01094 1.20972 0.95073 0.97118 0.95106 1.21757 1.01983 0.92731 1.02336 1.21976 1.01706 0.99008 0.96898 1.21877 0.98615 0.82342 0.98220 1.48120 1.18985 1.07604 1.57382 1.18930 0.80084 0.96096 0.91327 1.21770 0.92702 1.49151 0.94483 0.93036 1.25804 0.94783 0.94888 1.03560 1.70053 0.98337 1.50685 1.37664 0.85486 0.77613 0.78605 0.79547 1.18860 1.20870 1.19798 1.21213 0.89096 0.83537 0.76957 1.90547 1.70905 1.27904 1.58550 1.22635 0.92421 1.01469 1.03466 1.22147 0.91200 0.90976 0.88492 1.86241 1.22137 1.88954 1.39883 1.23613 0.99021 0.99482 0.98729 1.22717 0.98208 0.97088 0.98484 1.23082 0.91178 0.97710 1.02760 0.93792 0.91808 0.94971 0.90446 0.91499 0.92771 0.95217 0.91645 0.90087 0.91337 0.87916 0.94226 0.99051 0.92558 0.85766 0.86108 0.76728 0.89311 0.93916 0.90991 0.89250 0.90154 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 6.97 71.98 0.50 -3.97 16 2 C -0.08 -2.07 0.85 -52.18 -0.04 -2.12 16 3 C -0.13 -2.39 8.47 71.98 0.61 -1.78 16 4 C -0.14 -3.21 6.93 71.98 0.50 -2.71 16 5 C 0.11 3.36 4.55 86.38 0.39 3.75 16 6 N -0.59 -24.11 1.98 -826.12 -1.64 -25.75 16 7 C 0.26 13.58 3.92 85.63 0.34 13.92 16 8 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 9 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 10 C 0.01 0.49 5.46 84.65 0.46 0.95 16 11 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 12 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 13 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 16 C 0.50 20.00 5.95 87.66 0.52 20.52 16 17 O -0.60 -29.34 13.32 14.22 0.19 -29.15 16 18 C -0.16 -4.40 3.55 29.85 0.11 -4.29 16 19 C 0.11 3.22 1.09 -10.27 -0.01 3.21 16 20 O -0.56 -19.28 13.39 -131.72 -1.76 -21.05 16 21 C -0.17 -4.96 7.00 31.13 0.22 -4.74 16 22 C -0.13 -2.81 8.02 31.12 0.25 -2.56 16 23 C -0.11 -2.19 7.47 31.12 0.23 -1.96 16 24 H 0.04 1.49 7.69 -2.39 -0.02 1.47 16 25 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.03 1.26 5.77 -2.39 -0.01 1.24 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.03 0.86 6.12 -2.39 -0.01 0.85 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.42 6.86 -2.39 -0.02 1.41 16 33 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 34 H 0.10 2.32 6.30 -2.39 -0.02 2.31 16 35 H 0.04 2.12 5.32 -2.38 -0.01 2.11 16 36 H -0.01 -0.54 7.35 -2.39 -0.02 -0.56 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.12 2.79 4.26 -2.39 -0.01 2.78 16 39 H 0.12 2.74 7.87 -2.39 -0.02 2.72 16 40 H 0.38 14.62 6.46 -74.06 -0.48 14.14 16 41 H 0.09 2.41 8.04 -2.39 -0.02 2.39 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.12 1.68 8.10 -2.39 -0.02 1.67 16 Total: -1.00 -71.97 350.13 3.89 -68.07 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.48 Total: 29.36 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.31 Total: -12.56 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.35 Total: -81.68 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.57 Total: -50.19 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.97 3.89 -68.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448915580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.815 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds