Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 2 1 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 2 8 8 O 1.42901 * 112.85186 * 55.32875 * 7 6 5 9 9 C 1.53789 * 113.61157 * 284.13108 * 7 6 5 10 10 C 1.53947 * 87.02059 * 220.04975 * 9 7 6 11 11 C 1.50707 * 113.53781 * 270.81343 * 10 9 7 12 12 O 1.21279 * 119.99857 * 97.49590 * 11 10 9 13 13 N 1.34778 * 119.99840 * 277.49482 * 11 10 9 14 14 C 1.46501 * 119.99889 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46685 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00641 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99545 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00160 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47275 * 59.99610 * 19 17 15 21 21 H 1.48495 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46756 * 299.99790 * 19 17 15 23 23 C 1.53780 * 113.61469 * 186.52924 * 7 6 5 24 24 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 29 29 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 30 30 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 31 31 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 32 32 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 34 34 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 35 35 H 1.09001 * 109.47194 * 299.99650 * 6 5 2 36 36 H 1.08992 * 109.47399 * 59.99823 * 6 5 2 37 37 H 0.96697 * 114.00174 * 309.66475 * 8 7 6 38 38 H 1.08997 * 113.61584 * 334.57226 * 9 7 6 39 39 H 1.09005 * 113.61107 * 105.47309 * 9 7 6 40 40 H 1.08998 * 113.74492 * 139.94167 * 10 9 7 41 41 H 0.97004 * 119.99642 * 359.97438 * 13 11 10 42 42 H 1.08998 * 109.46954 * 300.00316 * 14 13 11 43 43 H 1.08997 * 109.46813 * 60.00063 * 14 13 11 44 44 H 0.96999 * 120.00380 * 180.02562 * 18 17 15 45 45 H 1.09002 * 113.61370 * 254.52835 * 23 7 6 46 46 H 1.09006 * 113.61619 * 25.34332 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5300 -2.1638 1.2490 7 6 2.0396 -2.8850 2.4985 8 8 1.6929 -2.2096 3.7092 9 6 3.5229 -3.2831 2.4182 10 6 3.1224 -4.6037 3.1004 11 6 3.1679 -4.5415 4.6055 12 8 2.1517 -4.3369 5.2350 13 7 4.3380 -4.7133 5.2520 14 6 4.3822 -4.6534 6.7151 15 6 5.7968 -4.8762 7.1844 16 1 6.5842 -5.0451 6.4649 17 6 6.0857 -4.8644 8.5325 18 7 5.1269 -4.6583 9.4088 19 14 7.8393 -5.1399 9.1144 20 1 8.7196 -4.0857 8.5496 21 1 7.8841 -5.0793 10.5974 22 1 8.3084 -6.4732 8.6585 23 6 1.7159 -4.3882 2.5173 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6765 -1.7488 -1.2494 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7209 -1.2497 33 1 1.6768 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2488 35 1 0.4400 -2.1639 1.2491 36 1 1.8933 -2.6776 0.3591 37 1 1.9156 -1.2686 3.7123 38 1 3.8860 -3.4110 1.3984 39 1 4.1765 -2.6572 3.0259 40 1 3.6328 -5.4784 2.6973 41 1 5.1507 -4.8774 4.7484 42 1 4.0379 -3.6747 7.0492 43 1 3.7360 -5.4270 7.1300 44 1 5.3302 -4.6497 10.3572 45 1 0.9127 -4.6533 3.2049 46 1 1.5826 -4.8186 1.5247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451239155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = -96.119400 kcal Electronic energy + Delta-G solvation = -23034.689544 eV Core-core repulsion = 19730.968717 eV Total energy + Delta-G solvation = -3303.720827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42492 -38.37046 -37.16639 -34.34667 -33.95867 -32.19738 -31.07211 -27.57921 -27.55365 -27.53446 -25.81737 -25.38013 -23.26475 -21.71809 -20.26734 -18.84919 -18.82816 -16.77944 -16.63434 -15.71500 -15.58416 -15.18452 -14.99354 -14.65938 -14.32526 -14.25562 -14.07263 -13.65232 -13.47878 -12.96819 -12.65762 -12.40331 -12.23730 -11.99391 -11.95802 -11.93313 -11.77691 -11.54988 -11.26387 -11.15981 -11.13249 -10.93978 -10.85565 -10.77316 -10.69545 -10.65463 -10.25548 -9.87227 -9.41927 -9.33431 -8.77552 -8.65828 -7.71350 -6.11080 -4.17689 3.27888 3.32448 3.34146 3.55000 4.10711 4.28068 4.36686 4.43885 4.51310 4.54869 4.64451 4.86097 4.95442 4.97332 5.12253 5.24508 5.27715 5.31876 5.39846 5.46961 5.51816 5.52540 5.64794 5.66465 5.68750 5.70524 5.75235 5.82465 5.83693 5.92811 5.96248 6.03476 6.15465 6.17777 6.29605 6.35249 6.39122 7.41659 7.59979 7.62208 7.76546 7.93248 8.04965 8.77380 8.89051 9.30661 9.50232 10.99147 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027727 B = 0.003121 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.596274 B = 8968.693749 C = 9270.091796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.137 4.137 7 C 0.111 3.889 8 O -0.516 6.516 9 C -0.151 4.151 10 C -0.133 4.133 11 C 0.516 3.484 12 O -0.533 6.533 13 N -0.717 5.717 14 C 0.253 3.747 15 C -0.542 4.542 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 C -0.111 4.111 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.366 0.634 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.387 0.613 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.266 0.734 45 H 0.089 0.911 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 7.999 -22.454 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.151 4.151 6 C -0.175 4.175 7 C 0.069 3.931 8 O -0.320 6.320 9 C -0.190 4.190 10 C -0.155 4.155 11 C 0.300 3.700 12 O -0.409 6.409 13 N -0.366 5.366 14 C 0.132 3.868 15 C -0.580 4.580 16 H 0.079 0.921 17 C -0.141 4.141 18 N -0.524 5.524 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.213 0.787 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.219 0.781 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.417 7.569 -21.577 23.750 hybrid contribution 1.673 0.305 -0.003 1.701 sum -4.744 7.874 -21.580 23.456 Atomic orbital electron populations 1.21939 0.94664 1.02015 1.01528 1.20520 0.95671 0.95295 0.95357 1.21880 1.00983 0.95470 1.01636 1.21935 1.00962 1.00420 0.96762 1.21644 1.00805 0.95277 0.97371 1.22240 1.01739 0.95745 0.97761 1.22129 0.93408 0.92767 0.84752 1.86833 1.84655 1.25273 1.35271 1.23624 0.98025 0.96593 1.00711 1.22382 0.99196 0.99387 0.94498 1.19754 0.84302 0.77795 0.88185 1.90659 1.33881 1.48241 1.68161 1.46377 1.08605 1.71324 1.10267 1.19022 0.96942 0.97488 0.73336 1.21215 0.93359 1.51157 0.92305 0.92071 1.24955 0.97722 0.94872 0.96503 1.69972 1.32191 1.48210 1.01987 0.86494 0.84095 0.78776 0.77634 1.20112 1.21091 1.20101 1.22882 0.97454 0.93461 1.01030 0.92633 0.93018 0.92242 0.92681 0.92862 0.92630 0.92284 0.92991 0.92696 0.91825 0.91651 0.90932 0.90737 0.78726 0.89131 0.90591 0.88977 0.78091 0.95725 0.95830 0.92458 0.89221 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.12 37.16 0.30 -0.77 16 2 C -0.07 -0.51 0.80 -154.51 -0.12 -0.63 16 3 C -0.14 -1.02 8.47 37.15 0.31 -0.70 16 4 C -0.14 -0.99 8.12 37.16 0.30 -0.69 16 5 C -0.11 -0.96 3.86 -26.73 -0.10 -1.06 16 6 C -0.14 -1.28 4.13 -26.73 -0.11 -1.39 16 7 C 0.11 1.42 1.37 -89.80 -0.12 1.29 16 8 O -0.52 -8.33 11.47 -53.75 -0.62 -8.95 16 9 C -0.15 -1.87 6.84 -25.83 -0.18 -2.05 16 10 C -0.13 -2.00 4.35 -90.87 -0.40 -2.40 16 11 C 0.52 10.87 6.74 -10.98 -0.07 10.80 16 12 O -0.53 -13.50 14.54 -12.96 -0.19 -13.69 16 13 N -0.72 -15.89 5.55 -61.47 -0.34 -16.23 16 14 C 0.25 6.97 5.43 -5.19 -0.03 6.95 16 15 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.11 -1.51 6.89 -25.92 -0.18 -1.69 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.56 6.76 -51.93 -0.35 0.21 16 34 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 35 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 36 H 0.07 0.61 6.37 -51.93 -0.33 0.28 16 37 H 0.37 4.62 7.23 45.56 0.33 4.95 16 38 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 39 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.39 7.44 8.32 -40.82 -0.34 7.10 16 42 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.09 1.49 7.43 -51.93 -0.39 1.11 16 46 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -33.73 360.54 -8.32 -42.06 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.52 Total: 7.26 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.81 Total: -6.10 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.40 Total: -42.21 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.81 Total: -22.64 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.73 -8.32 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451239155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.064 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds