Wall clock time and date at job start Tue Mar 31 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00046 * 2 1 4 4 C 1.52995 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47350 * 65.00153 * 4 3 2 6 6 C 1.37098 * 120.00227 * 264.55448 * 5 4 3 7 7 H 1.07994 * 120.00500 * 145.64281 * 6 5 4 8 8 C 1.38952 * 119.99417 * 325.64509 * 6 5 4 9 9 N 1.31412 * 120.00229 * 338.16528 * 8 6 5 10 10 Si 1.86804 * 120.00126 * 158.15889 * 8 6 5 11 11 H 1.48510 * 109.46586 * 59.99884 * 10 8 6 12 12 H 1.48498 * 109.47536 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47035 * 300.00620 * 10 8 6 14 14 C 1.34774 * 120.00077 * 84.54383 * 5 4 3 15 15 O 1.21295 * 120.00272 * 0.02562 * 14 5 4 16 16 C 1.50705 * 119.99924 * 180.02562 * 14 5 4 17 17 C 1.52999 * 109.47086 * 180.02562 * 16 14 5 18 18 C 1.52995 * 109.47190 * 184.99922 * 17 16 14 19 19 C 1.53000 * 109.47563 * 179.97438 * 18 17 16 20 20 C 1.53008 * 109.46919 * 59.99706 * 19 18 17 21 21 C 1.52999 * 109.47122 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47242 * 300.00490 * 20 19 18 23 23 C 1.52999 * 109.47190 * 59.99885 * 22 20 19 24 24 H 1.08997 * 109.46898 * 60.00342 * 1 2 3 25 25 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47521 * 300.00239 * 1 2 3 27 27 H 1.09001 * 109.47125 * 59.99384 * 3 2 1 28 28 H 1.08999 * 109.46999 * 299.99695 * 3 2 1 29 29 H 1.09001 * 109.47625 * 304.99700 * 4 3 2 30 30 H 1.09006 * 109.47136 * 184.99878 * 4 3 2 31 31 H 0.96998 * 120.00415 * 180.02562 * 9 8 6 32 32 H 1.08991 * 109.47329 * 60.00015 * 16 14 5 33 33 H 1.09006 * 109.47219 * 299.99987 * 16 14 5 34 34 H 1.08997 * 109.47159 * 305.00297 * 17 16 14 35 35 H 1.08995 * 109.47568 * 59.99632 * 18 17 16 36 36 H 1.09009 * 109.47168 * 299.99913 * 18 17 16 37 37 H 1.08993 * 109.47701 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.46988 * 300.00499 * 19 18 17 39 39 H 1.09005 * 109.46620 * 60.00265 * 20 19 18 40 40 H 1.08997 * 109.46842 * 59.99851 * 21 20 19 41 41 H 1.09001 * 109.47037 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.46868 * 300.00109 * 21 20 19 43 43 H 1.09001 * 109.47415 * 300.00152 * 22 20 19 44 44 H 1.09006 * 109.47348 * 179.97438 * 22 20 19 45 45 H 1.09002 * 109.47260 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.47547 * 60.00256 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2056 -0.7868 -1.3028 7 1 3.9867 -1.3373 -2.2057 8 6 4.7191 -1.4474 -0.1935 9 7 5.3770 -0.7761 0.7249 10 14 4.4743 -3.2900 -0.0075 11 1 5.0940 -3.9905 -1.1611 12 1 5.1135 -3.7498 1.2516 13 1 3.0215 -3.5946 0.0342 14 6 4.1575 1.3208 -2.3513 15 8 3.9553 2.5159 -2.3054 16 6 4.6109 0.6822 -3.6388 17 6 4.7379 1.7545 -4.7228 18 6 5.0767 1.0911 -6.0592 19 6 5.2030 2.1632 -7.1434 20 6 6.3150 3.1435 -6.7641 21 6 6.4409 4.2159 -7.8480 22 6 5.9761 3.8069 -5.4278 23 6 5.8498 2.7347 -4.3437 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1766 0.0902 31 1 5.7358 -1.2373 1.4991 32 1 3.8814 -0.0652 -3.9503 33 1 5.5785 0.2040 -3.4862 34 1 3.7946 2.2931 -4.8134 35 1 4.2845 0.3930 -6.3296 36 1 6.0201 0.5525 -5.9686 37 1 5.4449 1.6906 -8.0953 38 1 4.2596 2.7014 -7.2338 39 1 7.2585 2.6052 -6.6737 40 1 5.4973 4.7540 -7.9381 41 1 7.2333 4.9140 -7.5780 42 1 6.6822 3.7435 -8.8002 43 1 5.0325 4.3450 -5.5182 44 1 6.7685 4.5049 -5.1574 45 1 5.6088 3.2074 -3.3915 46 1 6.7933 2.1965 -4.2531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:23 Heat of formation + Delta-G solvation = -111.054105 kcal Electronic energy + Delta-G solvation = -23748.195161 eV Core-core repulsion = 20443.826717 eV Total energy + Delta-G solvation = -3304.368445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.19189 -38.02098 -36.84911 -34.68586 -33.16941 -31.50419 -30.36360 -29.69298 -28.06220 -25.80892 -24.86180 -24.17943 -22.30723 -21.80376 -20.27188 -19.35505 -18.87364 -16.72570 -16.09176 -15.37792 -15.32685 -14.93659 -14.40136 -14.28905 -14.08471 -14.06886 -13.98339 -13.83689 -13.16694 -12.99007 -12.32476 -12.24488 -11.95383 -11.79082 -11.53957 -11.38577 -11.26509 -11.09216 -11.03648 -10.94487 -10.73965 -10.72443 -10.48373 -10.36940 -10.32049 -10.04084 -9.93560 -9.65120 -9.53616 -9.06256 -8.91220 -8.21837 -7.43366 -6.27508 -3.90703 3.21406 3.29095 3.34617 3.99605 4.22794 4.54833 4.78088 4.91276 5.00369 5.07236 5.15582 5.43661 5.49655 5.67068 5.68865 5.73425 5.74909 5.79832 5.83961 5.90329 5.93713 5.96794 6.01249 6.07356 6.11277 6.13990 6.25142 6.33097 6.37664 6.42686 6.47695 6.48792 6.51578 6.62391 6.68535 6.77564 6.85592 7.06782 7.12429 7.34812 7.55455 7.87145 8.06483 8.46409 9.20377 9.63211 10.04541 10.75346 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.004677 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.382251 B = 5985.619689 C = 6618.565687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.431 5.431 6 C -0.321 4.321 7 H 0.086 0.914 8 C 0.048 3.952 9 N -0.865 5.865 10 Si 0.913 3.087 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.467 3.533 15 O -0.609 6.609 16 C -0.114 4.114 17 C -0.066 4.066 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.117 4.117 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.268 0.732 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 3.441 -8.935 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.148 5.148 6 C -0.449 4.449 7 H 0.104 0.896 8 C -0.157 4.157 9 N -0.502 5.502 10 Si 0.739 3.261 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.257 3.743 15 O -0.497 6.497 16 C -0.154 4.154 17 C -0.085 4.085 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.204 4.204 22 C -0.147 4.147 23 C -0.154 4.154 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.748 3.796 -8.696 9.648 hybrid contribution -0.416 -0.865 0.263 0.996 sum -2.163 2.931 -8.432 9.186 Atomic orbital electron populations 1.22638 0.83537 1.01663 0.98788 1.88138 1.17280 1.27833 1.95025 1.23043 0.96755 0.84205 0.98511 1.21451 0.88982 0.98982 0.91657 1.43371 1.56373 1.07326 1.07740 1.19243 1.42036 0.82203 1.01417 0.89609 1.25202 0.94114 0.99733 0.96674 1.69899 1.31362 1.37119 1.11848 0.86241 0.78930 0.83336 0.77546 1.20061 1.21186 1.19704 1.20444 0.80907 0.86349 0.86579 1.90461 1.57738 1.15372 1.86093 1.21402 1.02676 0.98027 0.93278 1.20853 0.99297 0.95641 0.92725 1.21618 1.01355 0.97395 0.94953 1.21555 0.98574 0.96800 0.97841 1.21170 0.98803 0.96083 0.95155 1.21838 1.01412 0.98753 0.98347 1.21564 1.00902 0.97959 0.94283 1.21673 0.97638 0.96457 0.99647 0.95031 0.90493 0.95212 0.94490 0.94129 0.86701 0.91444 0.92193 0.90794 0.89843 0.91323 0.92390 0.92174 0.92699 0.92288 0.91553 0.92917 0.93020 0.93180 0.92344 0.92796 0.89434 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.96 10.44 -35.23 -0.37 -8.32 16 3 C 0.05 1.12 6.24 37.16 0.23 1.35 16 4 C 0.11 2.75 5.29 -4.05 -0.02 2.73 16 5 N -0.43 -10.89 2.51 -114.81 -0.29 -11.18 16 6 C -0.32 -8.25 8.48 -14.93 -0.13 -8.37 16 7 H 0.09 2.13 6.98 -52.49 -0.37 1.77 16 8 C 0.05 1.23 4.93 -17.47 -0.09 1.14 16 9 N -0.86 -23.10 11.34 55.50 0.63 -22.47 16 10 Si 0.91 20.18 29.61 -169.99 -5.03 15.15 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.47 11.22 7.31 -10.98 -0.08 11.14 16 15 O -0.61 -15.41 13.64 5.54 0.08 -15.34 16 16 C -0.11 -2.28 3.84 -27.88 -0.11 -2.39 16 17 C -0.07 -1.14 1.84 -90.62 -0.17 -1.31 16 18 C -0.12 -1.63 5.20 -26.73 -0.14 -1.77 16 19 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 20 C -0.09 -1.16 2.72 -90.62 -0.25 -1.40 16 21 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 22 C -0.11 -1.57 5.20 -26.73 -0.14 -1.71 16 23 C -0.12 -2.02 4.94 -26.73 -0.13 -2.15 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.12 2.99 5.37 -51.93 -0.28 2.71 16 30 H 0.07 1.64 7.59 -51.93 -0.39 1.25 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.07 1.43 7.65 -51.93 -0.40 1.03 16 33 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 34 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.80 5.96 -51.93 -0.31 1.49 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -28.46 358.42 -7.76 -36.22 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.48 Total: 4.35 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 0.30 Total: -3.81 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.34 Total: -33.65 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.29 Total: -23.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.46 -7.76 -36.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.835 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds