Wall clock time and date at job start Tue Mar 31 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00150 * 2 1 4 4 C 1.52993 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47198 * 65.00418 * 4 3 2 6 6 C 1.37096 * 119.99630 * 266.25657 * 5 4 3 7 7 H 1.08003 * 119.99626 * 137.53497 * 6 5 4 8 8 C 1.38954 * 120.00351 * 317.53491 * 6 5 4 9 9 N 1.31410 * 119.99740 * 339.87057 * 8 6 5 10 10 Si 1.86799 * 119.99869 * 159.86975 * 8 6 5 11 11 H 1.48497 * 109.47358 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46945 * 120.00562 * 10 8 6 13 13 H 1.48498 * 109.47260 * 240.00091 * 10 8 6 14 14 C 1.34773 * 119.99913 * 86.25734 * 5 4 3 15 15 O 1.21284 * 120.00209 * 355.78408 * 14 5 4 16 16 C 1.50703 * 119.99440 * 175.51254 * 14 5 4 17 17 H 1.08998 * 109.47397 * 45.75729 * 16 14 5 18 18 C 1.52999 * 109.47182 * 285.75236 * 16 14 5 19 19 C 1.52995 * 109.47213 * 180.02562 * 18 16 14 20 20 C 1.53006 * 109.47257 * 60.00246 * 19 18 16 21 21 C 1.52999 * 109.46809 * 300.00002 * 20 19 18 22 22 C 1.53000 * 109.46759 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47201 * 299.99684 * 21 20 19 24 24 C 1.52995 * 109.47213 * 59.99971 * 21 20 19 25 25 H 1.08993 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46817 * 300.00203 * 1 2 3 27 27 H 1.09006 * 109.46734 * 59.99565 * 1 2 3 28 28 H 1.08999 * 109.46908 * 60.00122 * 3 2 1 29 29 H 1.08996 * 109.47002 * 300.00140 * 3 2 1 30 30 H 1.09002 * 109.47520 * 305.00287 * 4 3 2 31 31 H 1.09004 * 109.47451 * 185.00104 * 4 3 2 32 32 H 0.97001 * 119.99793 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47357 * 300.00518 * 18 16 14 34 34 H 1.09001 * 109.46896 * 60.00482 * 18 16 14 35 35 H 1.09006 * 109.47179 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.47403 * 300.00070 * 19 18 16 37 37 H 1.08998 * 109.46902 * 59.99963 * 20 19 18 38 38 H 1.09001 * 109.47073 * 179.97438 * 20 19 18 39 39 H 1.09010 * 109.47019 * 60.00587 * 22 21 20 40 40 H 1.09001 * 109.47081 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47870 * 300.00596 * 22 21 20 42 42 H 1.08995 * 109.46863 * 60.00551 * 23 21 20 43 43 H 1.09006 * 109.46700 * 180.02562 * 23 21 20 44 44 H 1.08995 * 109.46943 * 300.00184 * 23 21 20 45 45 H 1.08998 * 109.47786 * 179.97438 * 24 21 20 46 46 H 1.09005 * 109.47403 * 59.99930 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1718 -0.7916 -1.3122 7 1 3.8298 -1.3480 -2.1724 8 6 4.8096 -1.4497 -0.2678 9 7 5.5645 -0.7753 0.5703 10 14 4.5939 -3.2930 -0.0550 11 1 3.7019 -3.8134 -1.1220 12 1 5.9174 -3.9601 -0.1476 13 1 3.9915 -3.5708 1.2736 14 6 4.1908 1.3258 -2.3420 15 8 3.9452 2.5131 -2.3103 16 6 4.7410 0.7033 -3.5993 17 1 4.2082 -0.2243 -3.8087 18 6 6.2298 0.4050 -3.4113 19 6 6.7886 -0.2264 -4.6880 20 6 6.6063 0.7424 -5.8582 21 6 5.1175 1.0407 -6.0461 22 6 4.9353 2.0099 -7.2158 23 6 4.3698 -0.2612 -6.3407 24 6 4.5587 1.6721 -4.7694 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1766 0.0902 32 1 6.0094 -1.2347 1.2996 33 1 6.7626 1.3326 -3.2019 34 1 6.3597 -0.2849 -2.5775 35 1 7.8492 -0.4393 -4.5540 36 1 6.2559 -1.1539 -4.8979 37 1 7.1390 1.6699 -5.6483 38 1 7.0049 0.2928 -6.7676 39 1 5.3335 1.5604 -8.1256 40 1 3.8746 2.2221 -7.3500 41 1 5.4680 2.9374 -7.0057 42 1 4.4996 -0.9514 -5.5071 43 1 3.3091 -0.0486 -6.4750 44 1 4.7679 -0.7110 -7.2502 45 1 3.4982 1.8850 -4.9034 46 1 5.0914 2.5996 -4.5595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:14 Heat of formation + Delta-G solvation = -106.251181 kcal Electronic energy + Delta-G solvation = -24557.624920 eV Core-core repulsion = 21253.464746 eV Total energy + Delta-G solvation = -3304.160174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.62156 -37.95398 -36.80663 -34.59162 -32.73507 -31.52830 -30.53628 -28.90201 -27.06803 -25.91875 -25.73380 -24.68784 -23.19953 -21.44885 -20.72492 -18.89058 -17.93301 -16.77914 -16.09792 -15.41095 -15.26419 -14.74996 -14.44803 -14.29194 -14.25655 -14.00158 -13.77596 -13.31556 -13.21774 -12.62834 -12.48277 -11.98202 -11.90158 -11.82723 -11.54852 -11.34835 -11.18209 -11.13351 -11.01391 -10.97392 -10.79914 -10.69010 -10.46817 -10.40818 -10.30202 -10.03332 -9.85403 -9.53161 -9.41209 -9.02623 -8.90753 -8.21266 -7.36834 -6.27281 -3.96087 3.19620 3.30506 3.34536 3.99779 4.22946 4.53080 4.77140 5.04189 5.07036 5.14656 5.23220 5.58063 5.66921 5.70081 5.73975 5.77900 5.86307 5.89042 5.96884 5.99996 6.03404 6.05403 6.10448 6.11629 6.12451 6.20061 6.32238 6.34982 6.36716 6.39333 6.46717 6.58440 6.67866 6.71089 6.76985 6.87548 6.92752 7.13387 7.23199 7.25819 7.55862 7.87428 8.09952 8.46495 9.21558 9.62286 10.05171 10.76876 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.006611 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.194779 B = 4234.150084 C = 5084.013973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.431 5.431 6 C -0.317 4.317 7 H 0.083 0.917 8 C 0.051 3.949 9 N -0.864 5.864 10 Si 0.908 3.092 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.281 1.281 14 C 0.477 3.523 15 O -0.613 6.613 16 C -0.081 4.081 17 H 0.085 0.915 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.066 4.066 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.085 4.085 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.266 0.734 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 0.154 -7.831 8.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.003 4.003 5 N -0.148 5.148 6 C -0.445 4.445 7 H 0.100 0.900 8 C -0.155 4.155 9 N -0.500 5.500 10 Si 0.735 3.265 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.207 1.207 14 C 0.267 3.733 15 O -0.499 6.499 16 C -0.102 4.102 17 H 0.103 0.897 18 C -0.139 4.139 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.195 4.195 23 C -0.201 4.201 24 C -0.123 4.123 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.954 0.517 -7.610 7.874 hybrid contribution -0.421 -0.767 0.350 0.943 sum -2.375 -0.250 -7.260 7.642 Atomic orbital electron populations 1.22640 0.83500 1.01682 0.98801 1.88130 1.17309 1.27802 1.95034 1.23045 0.96677 0.84244 0.98586 1.21307 0.89081 0.98668 0.91197 1.43266 1.56738 1.06868 1.07928 1.19163 1.36783 0.81520 1.07020 0.89976 1.25283 0.93757 0.99397 0.97032 1.69965 1.26482 1.36882 1.16698 0.86187 0.77846 0.83820 0.78638 1.19283 1.21132 1.20693 1.20568 0.80285 0.85978 0.86489 1.90488 1.57796 1.16354 1.85301 1.20938 0.97392 0.99089 0.92786 0.89713 1.21339 0.93480 1.01150 0.97911 1.21578 1.00178 0.98641 0.95107 1.21586 0.95254 0.99496 0.97956 1.20557 0.95451 0.95350 0.95251 1.21842 1.01308 0.98989 0.97396 1.21973 0.99582 0.97301 1.01278 1.21383 1.00434 0.98237 0.92274 0.90458 0.95210 0.95025 0.94508 0.93986 0.88038 0.91418 0.92377 0.93028 0.89304 0.92605 0.91835 0.92353 0.92846 0.93220 0.92962 0.92899 0.91528 0.93127 0.93413 0.92611 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.84 10.36 -35.23 -0.36 -8.20 16 3 C 0.05 1.10 6.26 37.15 0.23 1.34 16 4 C 0.12 2.92 5.29 -4.04 -0.02 2.90 16 5 N -0.43 -10.76 2.45 -114.81 -0.28 -11.04 16 6 C -0.32 -7.95 6.93 -14.93 -0.10 -8.06 16 7 H 0.08 2.05 6.91 -52.48 -0.36 1.68 16 8 C 0.05 1.28 4.90 -17.47 -0.09 1.20 16 9 N -0.86 -22.70 11.82 55.50 0.66 -22.05 16 10 Si 0.91 20.00 29.60 -169.99 -5.03 14.97 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.48 11.62 6.83 -10.99 -0.08 11.54 16 15 O -0.61 -16.13 15.68 5.55 0.09 -16.04 16 16 C -0.08 -1.64 1.54 -91.77 -0.14 -1.78 16 17 H 0.08 1.72 5.23 -51.93 -0.27 1.45 16 18 C -0.10 -1.95 5.09 -26.73 -0.14 -2.08 16 19 C -0.12 -1.82 5.65 -26.73 -0.15 -1.97 16 20 C -0.11 -1.47 4.73 -26.73 -0.13 -1.59 16 21 C -0.07 -0.95 0.77 -154.51 -0.12 -1.07 16 22 C -0.14 -1.72 8.47 37.16 0.31 -1.40 16 23 C -0.14 -1.97 7.78 37.16 0.29 -1.68 16 24 C -0.09 -1.53 3.41 -26.73 -0.09 -1.62 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.60 5.91 -51.93 -0.31 2.30 16 31 H 0.07 1.64 7.60 -51.93 -0.39 1.25 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.96 6.96 -51.93 -0.36 1.60 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.98 4.81 -51.93 -0.25 0.73 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.24 7.94 -51.93 -0.41 0.83 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -28.50 352.11 -6.90 -35.40 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.17 Total: 4.32 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.90 Total: -2.66 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.37 Total: -33.09 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.28 Total: -24.24 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.50 -6.90 -35.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.850 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds