Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00319 * 2 1 4 4 C 1.52997 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47056 * 65.00615 * 4 3 2 6 6 C 1.37098 * 119.99648 * 266.19416 * 5 4 3 7 7 H 1.07998 * 120.00029 * 44.58363 * 6 5 4 8 8 C 1.38949 * 120.00157 * 224.57815 * 6 5 4 9 9 N 1.31408 * 120.00130 * 29.81833 * 8 6 5 10 10 Si 1.86798 * 120.00070 * 209.82270 * 8 6 5 11 11 H 1.48503 * 109.47271 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47095 * 119.99948 * 10 8 6 13 13 H 1.48498 * 109.47237 * 239.99869 * 10 8 6 14 14 C 1.34776 * 120.00358 * 86.19404 * 5 4 3 15 15 O 1.21294 * 120.00043 * 186.35976 * 14 5 4 16 16 C 1.50696 * 119.99777 * 6.36178 * 14 5 4 17 17 H 1.09001 * 109.47387 * 8.20897 * 16 14 5 18 18 C 1.53001 * 109.47118 * 128.20715 * 16 14 5 19 19 C 1.53004 * 109.47094 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.47070 * 299.99749 * 19 18 16 21 21 C 1.53001 * 109.46957 * 60.00167 * 20 19 18 22 22 C 1.52999 * 109.46957 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47210 * 59.99921 * 21 20 19 24 24 C 1.52999 * 109.47027 * 248.20453 * 16 14 5 25 25 H 1.09003 * 109.47376 * 59.99251 * 1 2 3 26 26 H 1.08998 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46784 * 299.99669 * 1 2 3 28 28 H 1.09003 * 109.47102 * 60.00091 * 3 2 1 29 29 H 1.09003 * 109.47145 * 300.00479 * 3 2 1 30 30 H 1.08996 * 109.47529 * 305.00184 * 4 3 2 31 31 H 1.09005 * 109.47169 * 185.00205 * 4 3 2 32 32 H 0.97003 * 120.00450 * 184.93124 * 9 8 6 33 33 H 1.09001 * 109.47003 * 299.99660 * 18 16 14 34 34 H 1.09000 * 109.47335 * 59.99655 * 18 16 14 35 35 H 1.08991 * 109.47272 * 60.00252 * 19 18 16 36 36 H 1.09003 * 109.46718 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47400 * 300.00439 * 20 19 18 38 38 H 1.08999 * 109.47242 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47242 * 299.99854 * 22 21 20 40 40 H 1.09001 * 109.47400 * 60.00272 * 22 21 20 41 41 H 1.09003 * 109.47029 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47025 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.47300 * 300.00018 * 23 21 20 44 44 H 1.09001 * 109.47067 * 59.99546 * 23 21 20 45 45 H 1.09003 * 109.47029 * 60.00581 * 24 16 14 46 46 H 1.09003 * 109.47725 * 300.00012 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1719 -0.7911 -1.3145 7 1 3.4470 -1.4621 -0.8779 8 6 5.3034 -1.3016 -1.9388 9 7 6.4190 -0.6071 -1.9471 10 14 5.2388 -2.9750 -2.7663 11 1 3.8770 -3.5484 -2.6179 12 1 5.5583 -2.8265 -4.2089 13 1 6.2296 -3.8802 -2.1305 14 6 4.1876 1.3263 -2.3441 15 8 4.4394 0.8035 -3.4092 16 6 4.1118 2.8278 -2.2410 17 1 4.0225 3.1161 -1.1936 18 6 5.3807 3.4444 -2.8332 19 6 5.3035 4.9689 -2.7291 20 6 4.0831 5.4718 -3.5028 21 6 2.8142 4.8552 -2.9107 22 6 1.5938 5.3586 -3.6840 23 6 2.6885 5.2603 -1.4406 24 6 2.8914 3.3312 -3.0144 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0890 32 1 7.1876 -0.9298 -2.4432 33 1 6.2502 3.0858 -2.2822 34 1 5.4701 3.1562 -3.8806 35 1 5.2140 5.2575 -1.6819 36 1 6.2073 5.4081 -3.1514 37 1 4.1727 5.1832 -4.5501 38 1 4.0283 6.5579 -3.4291 39 1 1.5390 6.4446 -3.6094 40 1 1.6831 5.0703 -4.7314 41 1 0.6898 4.9197 -3.2618 42 1 1.7843 4.8214 -1.0189 43 1 3.5579 4.9021 -0.8894 44 1 2.6336 6.3464 -1.3665 45 1 1.9874 2.8920 -2.5924 46 1 2.9807 3.0430 -4.0618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -95.507729 kcal Electronic energy + Delta-G solvation = -24813.334560 eV Core-core repulsion = 21509.640256 eV Total energy + Delta-G solvation = -3303.694303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.77776 -37.88798 -36.97887 -34.12173 -32.85980 -31.97548 -30.38866 -28.76304 -27.23293 -26.08903 -25.93052 -24.84012 -22.73975 -22.09104 -21.01719 -18.78701 -17.99913 -16.69010 -16.17251 -15.77663 -15.09462 -14.85837 -14.68295 -14.46158 -14.34302 -13.98428 -13.74129 -13.41146 -13.15175 -12.73101 -12.43273 -12.14076 -12.10235 -11.78312 -11.72162 -11.48939 -11.33956 -11.27710 -11.11124 -11.04126 -10.76604 -10.63293 -10.58553 -10.47704 -10.36289 -10.11052 -10.00501 -9.67155 -9.58503 -9.15901 -8.47403 -7.94186 -7.07032 -6.06583 -3.68827 3.41640 3.53996 3.56772 4.19666 4.33547 4.45566 4.81825 4.86161 4.97816 5.11623 5.34842 5.41217 5.48429 5.52853 5.56244 5.59565 5.66036 5.68932 5.72594 5.74742 5.81097 5.87776 5.90016 5.93334 5.95228 5.99563 6.04459 6.13619 6.16053 6.18470 6.21199 6.29593 6.40119 6.49750 6.55968 6.62637 6.65065 6.71626 6.86776 6.96802 7.68736 7.84725 8.45495 9.18916 9.32091 9.79182 10.39129 11.01474 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.007087 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.818937 B = 3949.870800 C = 5111.008058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.047 3.953 4 C 0.102 3.898 5 N -0.445 5.445 6 C -0.338 4.338 7 H 0.083 0.917 8 C 0.081 3.919 9 N -0.841 5.841 10 Si 0.897 3.103 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.290 1.290 14 C 0.489 3.511 15 O -0.555 6.555 16 C -0.106 4.106 17 H 0.077 0.923 18 C -0.099 4.099 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.065 4.065 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.090 4.090 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 12.646 2.690 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.031 4.031 4 C -0.023 4.023 5 N -0.166 5.166 6 C -0.464 4.464 7 H 0.100 0.900 8 C -0.128 4.128 9 N -0.475 5.475 10 Si 0.724 3.276 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.217 1.217 14 C 0.277 3.723 15 O -0.434 6.434 16 C -0.127 4.127 17 H 0.095 0.905 18 C -0.137 4.137 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.065 4.065 22 C -0.197 4.197 23 C -0.201 4.201 24 C -0.128 4.128 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.689 12.164 2.157 14.551 hybrid contribution -0.179 -0.491 -0.372 0.641 sum -7.868 11.673 1.786 14.190 Atomic orbital electron populations 1.22662 0.82885 1.02078 0.98909 1.88104 1.17900 1.27456 1.95045 1.23200 0.96204 0.84862 0.98792 1.21624 0.90636 0.98435 0.91597 1.43257 1.60944 1.06812 1.05616 1.19009 1.04602 0.80474 1.42310 0.89962 1.25120 0.93287 0.98055 0.96315 1.70031 1.00744 1.40915 1.35804 0.86426 0.77962 0.83297 0.79945 1.19500 1.20787 1.21660 1.19915 0.80856 0.87085 0.84428 1.90484 1.50641 1.74174 1.28143 1.21352 0.96006 0.95106 1.00268 0.90482 1.21324 0.96976 0.93323 1.02082 1.21599 0.97351 0.96437 1.00239 1.21573 0.94153 0.98934 0.99638 1.20534 0.94885 0.95629 0.95432 1.21849 0.97392 1.00311 1.00105 1.21973 1.01898 1.00456 0.95768 1.21453 0.96988 0.93216 1.01096 0.94773 0.90216 0.95036 0.94133 0.93780 0.90391 0.91138 0.92892 0.91751 0.91416 0.92043 0.92422 0.92084 0.92610 0.93034 0.92763 0.92882 0.92985 0.91849 0.93170 0.92447 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -7.10 10.08 -35.23 -0.36 -7.45 16 3 C 0.05 0.82 6.26 37.16 0.23 1.05 16 4 C 0.10 2.04 5.56 -4.04 -0.02 2.02 16 5 N -0.45 -11.30 2.46 -114.81 -0.28 -11.58 16 6 C -0.34 -9.67 8.75 -14.93 -0.13 -9.80 16 7 H 0.08 2.38 7.68 -52.49 -0.40 1.98 16 8 C 0.08 2.38 4.03 -17.47 -0.07 2.31 16 9 N -0.84 -25.28 12.86 55.50 0.71 -24.57 16 10 Si 0.90 23.10 29.65 -169.99 -5.04 18.06 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.49 12.33 5.75 -10.99 -0.06 12.26 16 15 O -0.55 -16.47 15.26 5.55 0.08 -16.39 16 16 C -0.11 -2.01 1.94 -91.77 -0.18 -2.18 16 17 H 0.08 1.33 3.66 -51.93 -0.19 1.14 16 18 C -0.10 -1.81 5.05 -26.73 -0.13 -1.95 16 19 C -0.12 -1.64 5.65 -26.73 -0.15 -1.79 16 20 C -0.11 -1.33 4.73 -26.73 -0.13 -1.46 16 21 C -0.06 -0.83 0.77 -154.53 -0.12 -0.95 16 22 C -0.14 -1.56 8.47 37.16 0.31 -1.24 16 23 C -0.14 -1.65 7.78 37.16 0.29 -1.36 16 24 C -0.09 -1.48 3.98 -26.76 -0.11 -1.59 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.76 6.71 -51.93 -0.35 0.41 16 30 H 0.08 1.61 8.01 -51.93 -0.42 1.19 16 31 H 0.07 1.24 5.77 -51.93 -0.30 0.94 16 32 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.37 7.97 -51.93 -0.41 0.95 16 35 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -33.85 351.42 -6.79 -40.64 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.06 Total: -0.91 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 0.85 Total: -3.10 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.43 Total: -36.15 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.27 Total: -23.84 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.04 Total: 18.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.85 -6.79 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.863 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds