Wall clock time and date at job start Tue Mar 31 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00240 * 2 1 4 4 C 1.53003 * 109.47499 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47018 * 64.99995 * 4 3 2 6 6 C 1.37103 * 119.99696 * 270.00558 * 5 4 3 7 7 H 1.07999 * 119.99936 * 140.13937 * 6 5 4 8 8 C 1.38952 * 119.99907 * 320.12969 * 6 5 4 9 9 N 1.31404 * 119.99935 * 160.65964 * 8 6 5 10 10 Si 1.86802 * 119.99949 * 340.65579 * 8 6 5 11 11 H 1.48499 * 109.46924 * 95.42752 * 10 8 6 12 12 H 1.48498 * 109.47146 * 215.42857 * 10 8 6 13 13 H 1.48496 * 109.47171 * 335.43037 * 10 8 6 14 14 C 1.34767 * 120.00392 * 90.00122 * 5 4 3 15 15 O 1.21295 * 119.99878 * 5.63608 * 14 5 4 16 16 C 1.50704 * 120.00568 * 185.63971 * 14 5 4 17 17 C 1.52998 * 109.47371 * 155.92342 * 16 14 5 18 18 C 1.53002 * 109.46934 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47516 * 300.00253 * 18 17 16 20 20 C 1.52996 * 109.47391 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.46653 * 300.00219 * 19 18 17 22 22 C 1.53006 * 109.46986 * 59.99539 * 19 18 17 23 23 C 1.52996 * 109.47189 * 300.00287 * 22 19 18 24 24 H 1.08996 * 109.47236 * 59.99989 * 1 2 3 25 25 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47192 * 299.99815 * 1 2 3 27 27 H 1.09005 * 109.47154 * 60.00023 * 3 2 1 28 28 H 1.09000 * 109.46858 * 300.00014 * 3 2 1 29 29 H 1.09001 * 109.46667 * 305.00034 * 4 3 2 30 30 H 1.08991 * 109.46989 * 184.99873 * 4 3 2 31 31 H 0.97000 * 120.00181 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46827 * 35.92062 * 16 14 5 33 33 H 1.08997 * 109.46977 * 60.00416 * 17 16 14 34 34 H 1.08993 * 109.47138 * 299.99967 * 17 16 14 35 35 H 1.08997 * 109.46957 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.46844 * 59.99978 * 18 17 16 37 37 H 1.09004 * 109.46974 * 60.00038 * 20 19 18 38 38 H 1.09000 * 109.47009 * 179.97438 * 20 19 18 39 39 H 1.08992 * 109.47478 * 300.00428 * 20 19 18 40 40 H 1.08999 * 109.47460 * 60.00104 * 21 19 18 41 41 H 1.09007 * 109.46882 * 180.02562 * 21 19 18 42 42 H 1.08996 * 109.47116 * 299.99188 * 21 19 18 43 43 H 1.09001 * 109.46688 * 60.00976 * 22 19 18 44 44 H 1.09007 * 109.46705 * 180.02562 * 22 19 18 45 45 H 1.08997 * 109.47052 * 299.99581 * 23 22 19 46 46 H 1.09004 * 109.46974 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7992 -1.3345 7 1 3.7886 -1.3147 -2.2317 8 6 4.6187 -1.5173 -0.2650 9 7 4.3955 -2.8087 -0.1698 10 14 5.6364 -0.6468 1.0373 11 1 4.7646 -0.2765 2.1810 12 1 6.7148 -1.5518 1.5096 13 1 6.2387 0.5801 0.4567 14 6 4.2634 1.3327 -2.3200 15 8 4.2553 2.5413 -2.2175 16 6 4.5939 0.6910 -3.6429 17 6 4.2926 1.6739 -4.7760 18 6 4.6288 1.0225 -6.1190 19 6 6.1124 0.6499 -6.1480 20 6 6.4484 -0.0021 -7.4907 21 6 6.9587 1.9117 -5.9671 22 6 6.4137 -0.3330 -5.0147 23 6 6.0776 0.3185 -3.6718 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8507 0.5685 0.8427 30 1 3.9784 2.1764 0.0902 31 1 4.7594 -3.3101 0.5766 32 1 3.9907 -0.2077 -3.7714 33 1 4.8959 2.5726 -4.6474 34 1 3.2358 1.9396 -4.7551 35 1 4.4137 1.7226 -6.9263 36 1 4.0259 0.1236 -6.2478 37 1 6.2338 0.6979 -8.2983 38 1 7.5055 -0.2671 -7.5115 39 1 5.8455 -0.9009 -7.6192 40 1 6.7192 2.3757 -5.0103 41 1 8.0157 1.6463 -5.9882 42 1 6.7441 2.6119 -6.7744 43 1 5.8108 -1.2319 -5.1437 44 1 7.4708 -0.5981 -5.0352 45 1 6.6805 1.2173 -3.5430 46 1 6.2918 -0.3819 -2.8645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:45 Heat of formation + Delta-G solvation = -95.152048 kcal Electronic energy + Delta-G solvation = -24475.161901 eV Core-core repulsion = 21171.483022 eV Total energy + Delta-G solvation = -3303.678880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76017 -38.22693 -36.95705 -34.75829 -32.78761 -31.87235 -30.37448 -29.39210 -27.13539 -26.49657 -25.72934 -24.57025 -22.73070 -22.19496 -20.86159 -18.83525 -18.07027 -16.88286 -16.40011 -15.72798 -15.39262 -14.99533 -14.56646 -14.48796 -14.43400 -13.99139 -13.72872 -13.61841 -12.94082 -12.74507 -12.52405 -12.22704 -12.04606 -11.95242 -11.70628 -11.64620 -11.56158 -11.45282 -11.27981 -10.89492 -10.86762 -10.72595 -10.53977 -10.51682 -10.06802 -10.00315 -9.86836 -9.59337 -9.47634 -9.06719 -9.03922 -8.39127 -7.68993 -6.32513 -3.92460 3.11859 3.26956 3.33963 3.76617 4.22635 4.34816 4.49939 4.95691 4.99245 5.05359 5.16599 5.49294 5.60768 5.62059 5.70066 5.71856 5.78128 5.78546 5.85294 5.88284 5.90920 5.96885 5.98202 6.02156 6.02721 6.05436 6.07812 6.22814 6.25354 6.28821 6.31644 6.42956 6.46677 6.54185 6.57435 6.66980 6.70117 6.78697 7.02130 7.05270 7.46009 7.82967 8.20746 8.35247 9.08443 9.45937 9.76678 10.78713 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.006081 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.678995 B = 4603.140436 C = 5204.010532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.056 3.944 4 C 0.099 3.901 5 N -0.458 5.458 6 C -0.323 4.323 7 H 0.102 0.898 8 C 0.074 3.926 9 N -0.862 5.862 10 Si 0.869 3.131 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.486 3.514 15 O -0.604 6.604 16 C -0.082 4.082 17 C -0.102 4.102 18 C -0.105 4.105 19 C -0.066 4.066 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.104 4.104 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.271 0.729 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 4.948 -7.283 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.178 5.178 6 C -0.451 4.451 7 H 0.120 0.880 8 C -0.133 4.133 9 N -0.498 5.498 10 Si 0.697 3.303 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.276 3.724 15 O -0.490 6.490 16 C -0.103 4.103 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.066 4.066 20 C -0.197 4.197 21 C -0.201 4.201 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.095 5.165 -7.108 8.787 hybrid contribution 0.132 0.367 0.956 1.032 sum 0.227 5.532 -6.153 8.277 Atomic orbital electron populations 1.22655 0.83135 1.02079 0.98650 1.88238 1.17572 1.26516 1.94973 1.22871 0.95061 0.85225 0.99038 1.21703 0.92058 0.98985 0.89664 1.43669 1.57770 1.07168 1.09160 1.18883 1.42226 0.78979 1.04978 0.88027 1.25195 0.95961 0.95009 0.97102 1.69740 1.41549 1.07468 1.31003 0.87065 0.80673 0.80354 0.82222 1.20328 1.21670 1.18718 1.20528 0.78687 0.86431 0.86728 1.90507 1.57728 1.14893 1.85883 1.20954 0.98185 0.99156 0.92009 1.21409 1.01040 0.98564 0.92942 1.21581 0.95139 1.00252 0.97263 1.20553 0.95468 0.95666 0.94945 1.21858 1.01037 1.00269 0.96495 1.21970 0.98950 0.97067 1.02157 1.21569 1.00686 0.97833 0.93983 1.21390 0.94334 1.00883 0.97565 0.94967 0.90080 0.95266 0.94057 0.93585 0.90981 0.89845 0.91853 0.89241 0.91123 0.92654 0.92554 0.92155 0.93167 0.93008 0.92803 0.91479 0.93244 0.93356 0.91776 0.92404 0.92356 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.71 10.18 -35.23 -0.36 -8.07 16 3 C 0.06 1.13 6.28 37.16 0.23 1.36 16 4 C 0.10 2.25 4.66 -4.04 -0.02 2.23 16 5 N -0.46 -11.06 2.12 -114.81 -0.24 -11.30 16 6 C -0.32 -8.37 7.83 -14.93 -0.12 -8.49 16 7 H 0.10 2.78 6.69 -52.49 -0.35 2.43 16 8 C 0.07 1.97 5.34 -17.47 -0.09 1.87 16 9 N -0.86 -24.06 13.96 55.50 0.77 -23.29 16 10 Si 0.87 20.84 24.94 -169.99 -4.24 16.60 16 11 H -0.28 -6.48 6.72 56.52 0.38 -6.10 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.49 11.24 6.75 -10.99 -0.07 11.17 16 15 O -0.60 -14.94 15.64 5.54 0.09 -14.85 16 16 C -0.08 -1.60 1.83 -91.77 -0.17 -1.77 16 17 C -0.10 -1.72 4.45 -26.73 -0.12 -1.84 16 18 C -0.10 -1.46 4.73 -26.73 -0.13 -1.58 16 19 C -0.07 -0.88 0.77 -154.51 -0.12 -0.99 16 20 C -0.14 -1.56 8.47 37.16 0.31 -1.25 16 21 C -0.14 -1.86 7.78 37.16 0.29 -1.57 16 22 C -0.10 -1.54 4.73 -26.73 -0.13 -1.67 16 23 C -0.10 -1.88 4.84 -26.73 -0.13 -2.01 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.70 3.35 -51.93 -0.17 1.52 16 30 H 0.08 1.82 7.35 -51.93 -0.38 1.43 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.09 1.82 6.60 -51.93 -0.34 1.48 16 33 H 0.07 1.25 6.16 -51.93 -0.32 0.93 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.98 4.81 -51.93 -0.25 0.73 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.06 6.43 -51.93 -0.33 0.72 16 46 H 0.08 1.64 7.41 -51.93 -0.38 1.25 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -29.40 346.46 -5.94 -35.33 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.04 Total: 3.26 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 0.86 Total: -2.91 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.53 Total: -34.59 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.27 Total: -22.92 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.24 Total: 16.60 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.40 -5.94 -35.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.821 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds