Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99804 * 2 1 4 4 C 1.52992 * 109.47123 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47411 * 66.63710 * 4 3 2 6 6 C 1.37099 * 120.00176 * 86.92296 * 5 4 3 7 7 H 1.08004 * 119.99549 * 215.81966 * 6 5 4 8 8 C 1.38948 * 120.00049 * 35.53734 * 6 5 4 9 9 N 1.31408 * 120.00242 * 215.54260 * 8 6 5 10 10 Si 1.86809 * 119.99629 * 35.55342 * 8 6 5 11 11 H 1.48495 * 109.47109 * 95.08171 * 10 8 6 12 12 H 1.48505 * 109.46719 * 215.08071 * 10 8 6 13 13 H 1.48502 * 109.46837 * 335.07969 * 10 8 6 14 14 C 1.34776 * 119.99479 * 266.92389 * 5 4 3 15 15 O 1.21290 * 120.00331 * 0.02562 * 14 5 4 16 16 C 1.50698 * 119.99670 * 179.97438 * 14 5 4 17 17 C 1.53004 * 109.47177 * 180.02562 * 16 14 5 18 18 C 1.53003 * 109.47062 * 59.99457 * 17 16 14 19 19 C 1.52998 * 109.46956 * 299.99827 * 17 16 14 20 20 C 1.52997 * 109.47180 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.46950 * 60.00086 * 20 19 17 22 22 C 1.52998 * 109.47108 * 299.99958 * 21 20 19 23 23 C 1.52997 * 109.47180 * 60.00183 * 22 21 20 24 24 H 1.08999 * 109.47637 * 60.00640 * 1 2 3 25 25 H 1.09004 * 109.46577 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47290 * 299.99665 * 1 2 3 27 27 H 1.08999 * 109.46995 * 59.99568 * 3 2 1 28 28 H 1.09007 * 109.46791 * 300.00483 * 3 2 1 29 29 H 1.08997 * 109.47453 * 306.63254 * 4 3 2 30 30 H 1.09007 * 109.47141 * 186.62910 * 4 3 2 31 31 H 0.97003 * 119.99836 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47137 * 299.99841 * 16 14 5 33 33 H 1.08993 * 109.47653 * 59.99888 * 16 14 5 34 34 H 1.09001 * 109.47037 * 60.00544 * 18 17 16 35 35 H 1.09002 * 109.46821 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.47227 * 300.00445 * 18 17 16 37 37 H 1.09004 * 109.47086 * 300.00070 * 19 17 16 38 38 H 1.09005 * 109.47467 * 59.99768 * 19 17 16 39 39 H 1.08995 * 109.47496 * 300.00036 * 20 19 17 40 40 H 1.09001 * 109.46975 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46720 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47109 * 59.99898 * 21 20 19 43 43 H 1.09004 * 109.47086 * 299.99954 * 22 21 20 44 44 H 1.08993 * 109.47091 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.47423 * 180.02562 * 23 22 21 46 46 H 1.08995 * 109.47496 * 59.99964 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9785 0.6004 -1.2689 6 6 4.2110 1.4084 -2.3518 7 1 3.9716 1.0610 -3.3461 8 6 4.7492 2.6764 -2.1698 9 7 4.3683 3.6690 -2.9421 10 14 6.0144 2.9700 -0.8271 11 1 7.3796 2.8619 -1.4013 12 1 5.8237 4.3274 -0.2557 13 1 5.8454 1.9542 0.2429 14 6 4.1576 -0.7315 -1.3710 15 8 3.9514 -1.4464 -0.4131 16 6 4.6128 -1.3327 -2.6757 17 6 4.7360 -2.8500 -2.5227 18 6 3.3760 -3.4359 -2.1381 19 6 5.7571 -3.1711 -1.4294 20 6 5.8799 -4.6884 -1.2759 21 6 6.3418 -5.2993 -2.6005 22 6 5.3207 -4.9782 -3.6937 23 6 5.1980 -3.4609 -3.8472 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6884 1.8464 -0.8900 29 1 3.8495 0.5447 0.8237 30 1 3.9782 2.1737 0.1180 31 1 4.7443 4.5541 -2.8152 32 1 3.8852 -1.1043 -3.4545 33 1 5.5815 -0.9150 -2.9499 34 1 2.6485 -3.2073 -2.9170 35 1 3.4637 -4.5170 -2.0295 36 1 3.0467 -3.0011 -1.1945 37 1 6.7261 -2.7536 -1.7034 38 1 5.4279 -2.7362 -0.4857 39 1 4.9109 -5.1055 -1.0018 40 1 6.6077 -4.9170 -0.4973 41 1 6.4297 -6.3802 -2.4909 42 1 7.3109 -4.8822 -2.8746 43 1 4.3517 -5.3953 -3.4196 44 1 5.6496 -5.4138 -4.6372 45 1 4.4702 -3.2322 -4.6258 46 1 6.1669 -3.0439 -4.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = -91.191555 kcal Electronic energy + Delta-G solvation = -24553.316003 eV Core-core repulsion = 21249.808863 eV Total energy + Delta-G solvation = -3303.507140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70018 -38.11060 -36.87746 -34.78359 -32.58296 -31.98150 -30.34346 -29.62734 -27.02598 -26.18444 -25.64702 -24.64599 -22.37334 -22.20394 -20.77400 -18.86519 -17.93101 -16.75865 -16.17435 -15.76205 -15.42342 -15.03060 -14.59922 -14.51692 -14.39098 -14.10793 -13.76795 -13.56126 -13.05743 -12.74563 -12.53542 -12.37665 -12.04092 -11.98689 -11.71186 -11.40280 -11.18513 -11.12631 -10.95519 -10.91915 -10.86555 -10.53254 -10.50170 -10.42409 -10.17616 -9.89397 -9.72378 -9.61624 -9.48817 -9.10913 -8.95880 -8.10303 -7.66895 -6.58588 -3.96812 3.08456 3.22697 3.30101 3.91740 4.13285 4.42410 4.47505 4.91409 5.03805 5.12322 5.17931 5.56702 5.60429 5.63544 5.71874 5.73474 5.80321 5.84992 5.91297 5.94106 5.95268 5.98734 6.04484 6.07452 6.19385 6.28392 6.32498 6.33704 6.37857 6.40855 6.44752 6.47955 6.54538 6.65132 6.70704 6.74997 6.86672 6.93546 7.15492 7.25631 7.40306 7.79643 8.14123 8.32940 9.02852 9.49819 9.89515 10.53210 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.006395 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.897014 B = 4377.646575 C = 5327.963274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.051 3.949 4 C 0.118 3.882 5 N -0.461 5.461 6 C -0.354 4.354 7 H 0.099 0.901 8 C 0.076 3.924 9 N -0.840 5.840 10 Si 0.846 3.154 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.255 1.255 14 C 0.487 3.513 15 O -0.576 6.576 16 C -0.110 4.110 17 C -0.038 4.038 18 C -0.150 4.150 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.274 0.726 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -9.501 1.357 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.027 4.027 4 C -0.006 4.006 5 N -0.182 5.182 6 C -0.480 4.480 7 H 0.117 0.883 8 C -0.133 4.133 9 N -0.473 5.473 10 Si 0.671 3.329 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.179 1.179 14 C 0.278 3.722 15 O -0.461 6.461 16 C -0.149 4.149 17 C -0.039 4.039 18 C -0.207 4.207 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.147 4.147 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.863 -9.782 1.755 9.975 hybrid contribution 0.521 0.915 0.300 1.095 sum -0.342 -8.866 2.055 9.108 Atomic orbital electron populations 1.22628 0.83011 1.01721 0.99033 1.88090 1.17784 1.27607 1.95153 1.22978 0.95436 0.84703 0.99591 1.21555 0.91325 0.98458 0.89259 1.43597 1.58825 1.05436 1.10386 1.18918 1.44310 0.96795 0.87972 0.88307 1.25266 0.96490 0.94877 0.96642 1.70008 1.36945 1.00374 1.39973 0.87436 0.83935 0.78098 0.83475 1.20335 1.20864 1.17947 1.20307 0.79694 0.82440 0.89794 1.90397 1.55341 1.60005 1.40342 1.21436 1.02649 0.93937 0.96920 1.20211 0.96035 0.93621 0.94028 1.22155 0.95492 0.99527 1.03524 1.21822 0.97676 0.94668 1.01388 1.21553 1.00804 0.96954 0.96167 1.21538 0.98753 0.99331 0.95898 1.21537 0.99463 0.96598 0.97897 1.21611 1.00911 0.94850 0.97354 0.94696 0.90476 0.95128 0.94296 0.92337 0.90571 0.90921 0.91618 0.90414 0.89990 0.94472 0.93731 0.89059 0.93513 0.88532 0.91926 0.93047 0.93024 0.92513 0.91879 0.92914 0.92406 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -7.55 9.93 -35.38 -0.35 -7.90 16 3 C 0.05 1.02 6.27 37.15 0.23 1.25 16 4 C 0.12 2.62 4.41 -4.04 -0.02 2.60 16 5 N -0.46 -10.96 2.16 -114.81 -0.25 -11.21 16 6 C -0.35 -8.98 8.95 -14.93 -0.13 -9.11 16 7 H 0.10 2.64 7.17 -52.48 -0.38 2.26 16 8 C 0.08 1.95 5.05 -17.47 -0.09 1.86 16 9 N -0.84 -22.37 13.96 55.50 0.77 -21.60 16 10 Si 0.85 19.36 26.27 -169.99 -4.46 14.90 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.80 5.96 56.52 0.34 -5.46 16 14 C 0.49 11.04 6.77 -10.99 -0.07 10.96 16 15 O -0.58 -13.55 10.41 5.40 0.06 -13.49 16 16 C -0.11 -2.15 3.44 -27.88 -0.10 -2.25 16 17 C -0.04 -0.65 0.51 -154.50 -0.08 -0.73 16 18 C -0.15 -2.57 7.48 37.16 0.28 -2.29 16 19 C -0.12 -2.00 4.43 -26.73 -0.12 -2.12 16 20 C -0.12 -1.67 5.65 -26.73 -0.15 -1.82 16 21 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 22 C -0.12 -1.48 5.65 -26.73 -0.15 -1.64 16 23 C -0.11 -1.58 4.73 -26.73 -0.13 -1.71 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.71 7.33 -51.93 -0.38 1.33 16 30 H 0.07 1.60 4.18 -51.93 -0.22 1.38 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.08 1.54 7.65 -51.93 -0.40 1.14 16 33 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.68 4.81 -51.93 -0.25 0.43 16 36 H 0.09 1.84 5.51 -51.93 -0.29 1.55 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.91 5.51 -51.93 -0.29 1.63 16 39 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -27.50 340.44 -6.65 -34.15 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.98 Total: 5.02 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 0.43 Total: -4.99 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.53 Total: -32.81 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.30 Total: -21.40 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.46 Total: 14.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.50 -6.65 -34.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.041 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds