Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 C 1.53002 * 109.47062 * 119.99987 * 2 1 3 5 5 C 1.50706 * 109.47153 * 300.00207 * 4 2 1 6 6 H 1.07998 * 119.99501 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00481 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 359.72901 * 7 5 4 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 C 1.52996 * 109.47755 * 239.99866 * 2 1 3 14 14 N 1.46500 * 109.46883 * 59.99936 * 13 2 1 15 15 C 1.34777 * 119.99841 * 180.02562 * 14 13 2 16 16 O 1.21280 * 120.00394 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99966 * 180.02562 * 15 14 13 18 18 H 1.09001 * 109.46944 * 60.00010 * 17 15 14 19 19 C 1.52999 * 109.47101 * 300.00082 * 17 15 14 20 20 C 1.53005 * 109.47201 * 180.02562 * 19 17 15 21 21 C 1.52996 * 109.47090 * 59.99675 * 20 19 17 22 22 C 1.53007 * 109.47258 * 300.00024 * 21 20 19 23 23 H 1.09001 * 109.46477 * 300.00408 * 22 21 20 24 24 O 1.42895 * 109.46966 * 180.02562 * 22 21 20 25 25 C 1.52996 * 109.46704 * 60.00064 * 22 21 20 26 26 H 1.09002 * 109.47628 * 300.00520 * 1 2 3 27 27 H 1.09004 * 109.46660 * 60.00401 * 1 2 3 28 28 H 1.09001 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47462 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47158 * 299.99903 * 3 2 1 31 31 H 1.09002 * 109.46915 * 59.99687 * 3 2 1 32 32 H 1.09004 * 109.47503 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46939 * 59.99797 * 4 2 1 34 34 H 0.96999 * 120.00235 * 179.72806 * 8 7 5 35 35 H 1.08999 * 109.47855 * 180.02562 * 13 2 1 36 36 H 1.09001 * 109.46830 * 300.00560 * 13 2 1 37 37 H 0.97005 * 120.00177 * 0.02562 * 14 13 2 38 38 H 1.09001 * 109.47163 * 299.99794 * 19 17 15 39 39 H 1.09002 * 109.47295 * 59.99712 * 19 17 15 40 40 H 1.09001 * 109.46760 * 299.99877 * 20 19 17 41 41 H 1.08994 * 109.46801 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46755 * 180.02562 * 21 20 19 43 43 H 1.08993 * 109.47310 * 60.00167 * 21 20 19 44 44 H 0.96707 * 114.00114 * 60.00250 * 24 22 21 45 45 H 1.09007 * 109.46700 * 179.97438 * 25 22 21 46 46 H 1.08998 * 109.47615 * 60.00437 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5375 -0.0109 2.4798 6 1 0.9170 0.8675 2.3806 7 6 1.8701 -0.4821 3.7320 8 7 1.4321 0.1381 4.8058 9 14 2.9372 -2.0057 3.9035 10 1 2.0734 -3.2130 3.9447 11 1 3.8601 -2.0968 2.7436 12 1 3.7263 -1.9187 5.1584 13 6 2.0401 -0.7212 -1.2491 14 7 1.5518 -0.0306 -2.4453 15 6 1.8771 -0.4914 -3.6694 16 8 2.5744 -1.4774 -3.7807 17 6 1.3753 0.2193 -4.9000 18 1 1.7394 1.2467 -4.9000 19 6 -0.1547 0.2204 -4.9000 20 6 -0.6642 0.9414 -6.1496 21 6 -0.1547 0.2192 -7.3985 22 6 1.3754 0.2182 -7.3984 23 1 1.7393 1.2456 -7.3989 24 8 1.8512 -0.4558 -8.5652 25 6 1.8848 -0.5028 -6.1489 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7209 1.2496 33 1 1.6765 -1.7489 1.2492 34 1 1.6628 -0.1958 5.6868 35 1 3.1301 -0.7216 -1.2489 36 1 1.6767 -1.7489 -1.2492 37 1 0.9943 0.7582 -2.3564 38 1 -0.5188 -0.8070 -4.9000 39 1 -0.5177 0.7345 -4.0100 40 1 -0.3001 1.9688 -6.1501 41 1 -1.7542 0.9425 -6.1493 42 1 -0.5173 0.7332 -8.2887 43 1 -0.5187 -0.8081 -7.3980 44 1 1.5662 -0.0521 -9.3964 45 1 2.9748 -0.5040 -6.1491 46 1 1.5208 -1.5302 -6.1483 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489849075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -128.235354 kcal Electronic energy + Delta-G solvation = -23094.653577 eV Core-core repulsion = 19789.540098 eV Total energy + Delta-G solvation = -3305.113479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34665 -38.62572 -37.19441 -35.72874 -33.66120 -32.14413 -31.28025 -29.81901 -27.83688 -26.58086 -26.37465 -23.88388 -22.65144 -22.23343 -20.57751 -19.91822 -18.43465 -17.53128 -16.93992 -16.68020 -15.82226 -15.45102 -15.06840 -14.82373 -14.37371 -14.17536 -14.13080 -13.56493 -13.42954 -13.24512 -12.85811 -12.73117 -12.65002 -12.30371 -12.19440 -11.92525 -11.45678 -11.26916 -11.18413 -11.14314 -11.01754 -10.98744 -10.71367 -10.63114 -10.50178 -10.12035 -9.98535 -9.83127 -9.73840 -9.38965 -9.00563 -8.80192 -8.54504 -6.05358 -4.02713 2.74357 3.27154 3.31105 3.39203 3.43360 3.90305 4.35205 4.36025 4.44914 4.62811 4.78429 4.80186 4.93255 5.02049 5.12632 5.21187 5.23349 5.27335 5.40715 5.51529 5.59546 5.61848 5.68313 5.70085 5.78302 5.83755 6.02007 6.08841 6.10074 6.13012 6.18135 6.29710 6.47435 6.57461 6.68526 6.88924 6.99617 7.03268 7.18984 7.34222 7.35493 7.66229 7.78647 8.36597 8.51723 8.98506 9.57468 11.07351 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.003188 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.710819 B = 8782.007182 C = 9208.899880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.289 1.289 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.512 3.488 16 O -0.544 6.544 17 C -0.103 4.103 18 H 0.097 0.903 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.153 4.153 22 C 0.105 3.895 23 H 0.055 0.945 24 O -0.566 6.566 25 C -0.092 4.092 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.376 0.624 45 H 0.076 0.924 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 4.003 -23.928 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.215 1.215 13 C 0.002 3.998 14 N -0.372 5.372 15 C 0.298 3.702 16 O -0.421 6.421 17 C -0.125 4.125 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.191 4.191 22 C 0.046 3.954 23 H 0.073 0.927 24 O -0.372 6.372 25 C -0.130 4.130 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.223 0.777 45 H 0.095 0.905 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.322 2.892 -23.332 23.744 hybrid contribution 0.011 -0.057 -0.014 0.059 sum -3.311 2.835 -23.346 23.750 Atomic orbital electron populations 1.21772 0.94807 1.01242 1.00729 1.20686 0.95807 0.95898 0.93945 1.21772 1.00463 0.95598 1.00737 1.19594 0.96292 0.95493 0.92624 1.21077 1.31830 1.13358 0.88620 0.90399 1.24995 0.95690 0.96752 0.95984 1.69898 1.46010 1.40521 0.97890 0.86860 0.81306 0.83961 0.77653 1.20363 1.18993 1.21504 1.21638 0.98891 0.96040 0.83243 1.46177 1.53242 1.31974 1.05765 1.20464 0.80404 0.84716 0.84653 1.90702 1.38087 1.26431 1.86884 1.21253 0.97091 1.00880 0.93266 0.88482 1.21587 0.92883 1.02079 0.98674 1.21466 1.00851 0.99291 0.93639 1.22305 0.96388 1.01971 0.98458 1.21813 0.92411 0.95183 0.85955 0.92715 1.86547 1.76979 1.57741 1.15904 1.21213 1.01868 0.99953 0.89961 0.90877 0.95052 0.93418 0.93404 0.95037 0.90873 0.96372 0.96821 0.92786 0.91865 0.91877 0.76550 0.91013 0.90893 0.91518 0.91126 0.91724 0.90936 0.77725 0.90493 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 2 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.59 8.20 -34.44 -0.28 -13.87 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.87 21.51 27.46 -169.99 -4.67 16.84 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.33 6.55 56.52 0.37 -5.96 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.12 2.08 4.56 -4.04 -0.02 2.06 16 14 N -0.72 -9.71 4.85 -60.29 -0.29 -10.01 16 15 C 0.51 7.18 7.15 -10.98 -0.08 7.10 16 16 O -0.54 -9.94 15.98 5.56 0.09 -9.85 16 17 C -0.10 -1.03 2.53 -91.77 -0.23 -1.26 16 18 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.11 -0.93 5.10 -26.73 -0.14 -1.07 16 20 C -0.11 -0.73 5.92 -26.73 -0.16 -0.89 16 21 C -0.15 -1.03 5.54 -26.73 -0.15 -1.18 16 22 C 0.11 0.87 3.47 -26.73 -0.09 0.78 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 O -0.57 -5.14 13.32 -35.23 -0.47 -5.61 16 25 C -0.09 -1.00 4.14 -26.74 -0.11 -1.12 16 26 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 31 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 32 H 0.02 0.42 7.21 -51.93 -0.37 0.05 16 33 H 0.01 0.31 7.56 -51.93 -0.39 -0.08 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 4.48 5.58 -40.82 -0.23 4.25 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.38 1.66 9.08 45.56 0.41 2.08 16 45 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 46 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -32.43 352.13 -7.53 -39.96 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.34 Total: 2.48 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.93 Total: -12.75 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.48 Total: -36.38 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.38 Total: -15.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.43 -7.53 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489849075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.272 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds