Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47156 * 2 1 4 4 C 1.52999 * 109.47438 * 239.99761 * 2 1 3 5 5 C 1.50698 * 109.46950 * 59.99944 * 4 2 1 6 6 H 1.07995 * 120.00195 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99872 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99750 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00113 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46859 * 89.99984 * 9 7 5 11 11 H 1.48493 * 109.47051 * 210.00006 * 9 7 5 12 12 H 1.48496 * 109.47114 * 330.00402 * 9 7 5 13 13 C 1.53002 * 109.47162 * 119.99536 * 2 1 3 14 14 N 1.46501 * 109.47087 * 299.99986 * 13 2 1 15 15 C 1.34778 * 119.99439 * 179.97438 * 14 13 2 16 16 O 1.21276 * 120.00402 * 0.02562 * 15 14 13 17 17 C 1.50709 * 119.99412 * 180.02562 * 15 14 13 18 18 H 1.08997 * 109.47021 * 300.00430 * 17 15 14 19 19 C 1.52998 * 109.46868 * 60.00511 * 17 15 14 20 20 C 1.53009 * 109.46634 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.46816 * 299.99494 * 20 19 17 22 22 C 1.53001 * 109.46901 * 60.00484 * 21 20 19 23 23 H 1.09008 * 109.47298 * 59.99909 * 22 21 20 24 24 O 1.42903 * 109.47171 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.46719 * 180.02562 * 17 15 14 26 26 H 1.08999 * 109.47727 * 300.00011 * 1 2 3 27 27 H 1.09001 * 109.46993 * 60.00567 * 1 2 3 28 28 H 1.09008 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47258 * 179.97438 * 3 2 1 30 30 H 1.09010 * 109.46813 * 299.99813 * 3 2 1 31 31 H 1.08999 * 109.47269 * 59.99703 * 3 2 1 32 32 H 1.08997 * 109.47286 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47350 * 299.99914 * 4 2 1 34 34 H 0.96993 * 119.99264 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47059 * 180.02562 * 13 2 1 36 36 H 1.08999 * 109.46874 * 60.00547 * 13 2 1 37 37 H 0.96995 * 120.00321 * 0.02562 * 14 13 2 38 38 H 1.08997 * 109.47366 * 60.00130 * 19 17 15 39 39 H 1.08997 * 109.47329 * 299.99516 * 19 17 15 40 40 H 1.09005 * 109.46793 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47155 * 59.99979 * 20 19 17 42 42 H 1.08997 * 109.47655 * 300.00179 * 21 20 19 43 43 H 1.08999 * 109.46822 * 180.02562 * 21 20 19 44 44 H 0.96700 * 114.00311 * 300.00378 * 24 22 21 45 45 H 1.08997 * 109.47384 * 60.00013 * 25 17 15 46 46 H 1.08997 * 109.47329 * 299.99756 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 1.4324 0.1379 -4.8058 9 14 2.9444 -2.0011 -3.9033 10 1 2.0858 -3.2119 -3.9480 11 1 3.7359 -1.9088 -5.1563 12 1 3.8651 -2.0899 -2.7416 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4454 15 6 1.8769 -0.4912 3.6695 16 8 2.5741 -1.4772 3.7809 17 6 1.3740 0.2190 4.9000 18 1 1.7372 1.2467 4.9002 19 6 -0.1560 0.2188 4.8994 20 6 -0.6664 0.9404 6.1484 21 6 -0.1568 0.2195 7.3979 22 6 1.3732 0.2197 7.3984 23 1 1.7365 1.2474 7.3983 24 8 1.8493 -0.4531 8.5658 25 6 1.8842 -0.5021 6.1492 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7490 -1.2492 34 1 1.6662 -0.1940 -5.6867 35 1 3.1300 -0.7207 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.9937 0.7580 2.3564 38 1 -0.5192 -0.8089 4.8992 39 1 -0.5191 0.7328 4.0095 40 1 -1.7565 0.9399 6.1483 41 1 -0.3032 1.9681 6.1482 42 1 -0.5200 -0.8082 7.3981 43 1 -0.5208 0.7333 8.2876 44 1 1.5637 -0.0492 9.3966 45 1 2.9741 -0.5017 6.1494 46 1 1.5212 -1.5299 6.1492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489849076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = -128.226966 kcal Electronic energy + Delta-G solvation = -23094.460106 eV Core-core repulsion = 19789.346991 eV Total energy + Delta-G solvation = -3305.113116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34571 -38.62418 -37.19425 -35.72838 -33.66139 -32.14326 -31.28070 -29.81698 -27.83727 -26.58071 -26.37408 -23.88264 -22.65244 -22.23274 -20.57743 -19.91806 -18.43425 -17.53069 -16.94026 -16.68032 -15.82225 -15.45117 -15.06791 -14.82361 -14.37383 -14.17533 -14.13039 -13.56490 -13.42971 -13.24452 -12.85790 -12.73051 -12.65037 -12.30414 -12.19463 -11.92516 -11.45748 -11.26967 -11.18410 -11.14327 -11.01738 -10.98732 -10.71368 -10.63125 -10.50130 -10.12095 -9.98618 -9.83061 -9.73660 -9.38946 -9.00554 -8.80200 -8.54466 -6.05417 -4.02684 2.74371 3.27175 3.31075 3.39185 3.43396 3.90341 4.35244 4.36014 4.44923 4.62772 4.78436 4.80184 4.93239 5.02058 5.12482 5.21192 5.23373 5.27292 5.40702 5.51554 5.59504 5.61878 5.68310 5.70040 5.78309 5.83791 6.02017 6.08876 6.10069 6.12984 6.18090 6.29746 6.47443 6.57457 6.68532 6.88943 6.99620 7.03283 7.19030 7.34251 7.35530 7.66263 7.78708 8.36618 8.51761 8.98548 9.57424 11.07322 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036851 B = 0.003188 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.631385 B = 8782.061943 C = 9209.388070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.512 3.488 16 O -0.544 6.544 17 C -0.103 4.103 18 H 0.097 0.903 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.153 4.153 22 C 0.105 3.895 23 H 0.055 0.945 24 O -0.566 6.566 25 C -0.092 4.092 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.376 0.624 45 H 0.076 0.924 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 4.001 23.925 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.372 5.372 15 C 0.298 3.702 16 O -0.421 6.421 17 C -0.125 4.125 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.191 4.191 22 C 0.046 3.954 23 H 0.073 0.927 24 O -0.372 6.372 25 C -0.130 4.130 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.223 0.777 45 H 0.095 0.905 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.324 2.891 23.330 23.742 hybrid contribution 0.013 -0.054 0.014 0.057 sum -3.312 2.837 23.344 23.747 Atomic orbital electron populations 1.21772 0.94809 1.01246 1.00730 1.20687 0.95806 0.95898 0.93944 1.21773 1.00459 0.95598 1.00737 1.19591 0.96294 0.95494 0.92624 1.21078 1.31858 1.13331 0.88619 0.90399 1.25002 0.95694 0.96756 0.95986 1.69903 1.45973 1.40551 0.97888 0.86856 0.81344 0.83905 0.77661 1.20368 1.21500 1.18988 1.21642 0.98886 0.96038 0.83246 1.46176 1.53217 1.32000 1.05768 1.20464 0.80408 0.84710 0.84652 1.90701 1.38100 1.26418 1.86882 1.21255 0.97085 1.00890 0.93271 0.88489 1.21585 0.92878 1.02073 0.98682 1.21470 1.00846 0.99294 0.93638 1.22304 0.96381 1.01981 0.98459 1.21827 0.92406 0.95194 0.85938 0.92714 1.86547 1.76930 1.57798 1.15899 1.21223 1.01850 0.99956 0.89956 0.95045 0.90882 0.93416 0.93408 0.90869 0.95042 0.96371 0.96819 0.92790 0.91867 0.91870 0.76553 0.91007 0.90898 0.91126 0.91509 0.90940 0.91723 0.77728 0.90492 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.15 0.30 -1.87 16 2 C -0.06 -1.13 0.54 -154.51 -0.08 -1.21 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.59 8.20 -34.44 -0.28 -13.87 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.88 5.47 -17.81 -0.10 1.78 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.12 2.08 4.56 -4.04 -0.02 2.06 16 14 N -0.72 -9.72 4.85 -60.29 -0.29 -10.01 16 15 C 0.51 7.18 7.15 -10.98 -0.08 7.10 16 16 O -0.54 -9.94 15.98 5.56 0.09 -9.85 16 17 C -0.10 -1.03 2.52 -91.77 -0.23 -1.26 16 18 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.11 -0.93 5.10 -26.73 -0.14 -1.07 16 20 C -0.11 -0.73 5.92 -26.73 -0.16 -0.89 16 21 C -0.15 -1.03 5.55 -26.73 -0.15 -1.18 16 22 C 0.11 0.87 3.47 -26.70 -0.09 0.78 16 23 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 24 O -0.57 -5.14 13.32 -35.23 -0.47 -5.61 16 25 C -0.09 -1.00 4.15 -26.71 -0.11 -1.11 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 28 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.40 6.62 -51.92 -0.34 1.06 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 4.48 5.58 -40.82 -0.23 4.25 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 1.66 9.08 45.56 0.41 2.08 16 45 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 46 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -32.43 352.13 -7.53 -39.96 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.34 Total: 2.48 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.93 Total: -12.76 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.48 Total: -36.38 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.38 Total: -15.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.43 -7.53 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489849076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.264 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds