Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.50696 * 109.47490 * 300.00187 * 4 2 1 6 6 H 1.08003 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00824 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99390 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00449 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47474 * 89.99640 * 9 7 5 11 11 H 1.48501 * 109.46758 * 209.99757 * 9 7 5 12 12 H 1.48499 * 109.47026 * 329.99605 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 14 14 N 1.46492 * 109.47363 * 59.99700 * 13 2 1 15 15 C 1.34779 * 120.00559 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99304 * 0.02562 * 15 14 13 17 17 C 1.50689 * 120.00546 * 180.02562 * 15 14 13 18 18 H 1.08996 * 109.47507 * 300.00347 * 17 15 14 19 19 C 1.53002 * 109.47218 * 59.99942 * 17 15 14 20 20 C 1.52997 * 109.47415 * 180.02562 * 19 17 15 21 21 C 1.53006 * 109.47164 * 300.00027 * 20 19 17 22 22 C 1.53002 * 109.46974 * 60.00102 * 21 20 19 23 23 H 1.08992 * 109.47060 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.47249 * 59.99727 * 22 21 20 25 25 C 1.52996 * 109.47351 * 179.97438 * 17 15 14 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 34 34 H 0.97010 * 119.99733 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47050 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 13 2 1 37 37 H 0.97009 * 120.00045 * 0.02562 * 14 13 2 38 38 H 1.09002 * 109.47070 * 300.00160 * 19 17 15 39 39 H 1.09000 * 109.46986 * 59.99989 * 19 17 15 40 40 H 1.09000 * 109.47140 * 59.99976 * 20 19 17 41 41 H 1.08998 * 109.47624 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47297 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.47050 * 300.00004 * 21 20 19 44 44 H 0.96700 * 113.99509 * 60.00278 * 24 22 21 45 45 H 1.09000 * 109.47054 * 300.00134 * 25 17 15 46 46 H 1.09001 * 109.46993 * 60.00425 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.5378 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8704 -0.4823 3.7319 8 7 2.6258 -1.5521 3.8525 9 14 1.2472 0.3978 5.2572 10 1 -0.0611 -0.1773 5.6607 11 1 2.2250 0.2267 6.3616 12 1 1.0822 1.8437 4.9617 13 6 2.0400 -0.7212 -1.2494 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4912 -3.6696 16 8 2.5733 -1.4778 -3.7809 17 6 1.3749 0.2195 -4.9000 18 1 0.2850 0.2204 -4.8999 19 6 1.8860 1.6617 -4.9000 20 6 1.3759 2.3835 -6.1489 21 6 1.8848 1.6621 -7.3985 22 6 1.3737 0.2199 -7.3985 23 1 1.7366 -0.2941 -8.2885 24 8 -0.0553 0.2210 -7.3978 25 6 1.8848 -0.5017 -6.1492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 -1.7489 1.2491 33 1 3.1300 -0.7216 1.2489 34 1 2.8602 -1.8835 4.7335 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2494 37 1 0.9942 0.7583 -2.3564 38 1 1.5231 2.1758 -4.0100 39 1 2.9760 1.6609 -4.9001 40 1 0.2859 2.3843 -6.1484 41 1 1.7403 3.4107 -6.1492 42 1 1.5211 2.1761 -8.2883 43 1 2.9748 1.6613 -7.3990 44 1 -0.4486 0.6631 -8.1626 45 1 2.9748 -0.5021 -6.1491 46 1 1.5210 -1.5292 -6.1495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489849077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -130.331949 kcal Electronic energy + Delta-G solvation = -23204.354826 eV Core-core repulsion = 19899.150431 eV Total energy + Delta-G solvation = -3305.204395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26660 -38.61820 -37.02951 -35.20703 -33.55548 -32.10049 -31.15684 -30.02007 -27.12472 -26.49837 -26.26087 -23.85849 -22.76366 -22.45198 -20.41608 -19.74396 -18.32089 -17.18761 -16.82656 -16.31652 -15.90949 -15.28270 -14.93727 -14.71998 -14.52754 -14.35465 -13.80273 -13.42282 -13.08240 -13.00359 -12.77842 -12.68075 -12.54938 -12.07356 -12.04907 -11.94358 -11.41084 -11.14524 -11.11505 -11.00628 -10.95525 -10.84164 -10.62805 -10.56429 -10.38617 -10.24334 -9.95745 -9.86141 -9.58107 -9.11319 -8.90690 -8.65538 -8.35190 -5.99202 -4.00490 2.89504 3.31342 3.38231 3.39812 3.50391 3.98700 4.41060 4.45037 4.47556 4.60593 4.91100 4.94454 5.06034 5.12960 5.21689 5.34019 5.36313 5.43091 5.55225 5.64524 5.64977 5.72749 5.76797 5.81115 5.91688 5.94093 6.08342 6.18318 6.19341 6.25147 6.32311 6.41703 6.60759 6.64239 6.80959 7.07790 7.08678 7.14669 7.38417 7.65175 7.77631 7.82023 7.99721 8.41250 8.51334 9.04375 9.62601 11.12293 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.038358 B = 0.003118 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.787469 B = 8976.797187 C = 9245.252492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.721 5.721 15 C 0.510 3.490 16 O -0.549 6.549 17 C -0.102 4.102 18 H 0.103 0.897 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.154 4.154 22 C 0.104 3.896 23 H 0.056 0.944 24 O -0.563 6.563 25 C -0.091 4.091 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.374 0.626 45 H 0.082 0.918 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 8.402 -22.539 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.372 5.372 15 C 0.296 3.704 16 O -0.427 6.427 17 C -0.123 4.123 18 H 0.121 0.879 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.191 4.191 22 C 0.045 3.955 23 H 0.074 0.926 24 O -0.368 6.368 25 C -0.129 4.129 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.220 0.780 45 H 0.101 0.899 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.008 7.245 -21.896 23.258 hybrid contribution -0.578 1.064 0.513 1.315 sum -3.586 8.309 -21.383 23.219 Atomic orbital electron populations 1.21759 0.95293 1.01161 1.00202 1.20901 0.95463 0.95839 0.95112 1.21754 1.00494 0.95919 1.00186 1.19083 0.96325 0.95220 0.89500 1.21186 1.31142 1.12051 0.90533 0.92263 1.25016 0.95317 0.95100 0.99087 1.69972 1.36973 1.23045 1.23422 0.86647 0.78567 0.80022 0.83066 1.20775 1.21345 1.19945 1.21612 0.98818 0.96029 0.83090 1.46226 1.53184 1.31879 1.05920 1.20649 0.80367 0.84601 0.84832 1.90679 1.38351 1.26641 1.86995 1.21238 1.02653 0.95537 0.92871 0.87927 1.21532 1.01229 0.93540 0.98581 1.21428 1.01498 0.98445 0.93662 1.22280 1.01764 0.96532 0.98572 1.21843 0.80932 0.94675 0.98007 0.92592 1.86555 1.19495 1.81199 1.49550 1.21351 1.00958 0.99419 0.91130 0.91459 0.93378 0.95242 0.91457 0.93406 0.95280 0.96376 0.96377 0.93048 0.91937 0.91927 0.76724 0.91283 0.91459 0.91100 0.91798 0.91796 0.90915 0.77969 0.89949 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.72 -10.74 4.85 -60.30 -0.29 -11.03 16 15 C 0.51 7.79 7.15 -10.99 -0.08 7.71 16 16 O -0.55 -10.55 15.98 5.55 0.09 -10.46 16 17 C -0.10 -1.16 2.38 -91.78 -0.22 -1.38 16 18 H 0.10 1.17 7.68 -51.93 -0.40 0.77 16 19 C -0.11 -1.04 5.10 -26.73 -0.14 -1.17 16 20 C -0.11 -0.84 5.78 -26.73 -0.15 -0.99 16 21 C -0.15 -1.03 5.64 -26.73 -0.15 -1.18 16 22 C 0.10 0.84 3.78 -26.70 -0.10 0.74 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 O -0.56 -4.69 11.97 -35.23 -0.42 -5.12 16 25 C -0.09 -0.99 4.24 -26.70 -0.11 -1.11 16 26 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 29 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 5.06 5.58 -40.82 -0.23 4.83 16 38 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.37 1.56 9.08 45.56 0.41 1.97 16 45 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 46 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -31.92 353.65 -7.84 -39.76 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.33 Total: 3.21 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.93 Total: -12.09 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.44 Total: -36.88 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.33 Total: -15.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.92 -7.84 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489849077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.572 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds