Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53006 * 109.46974 * 119.99942 * 2 1 3 5 5 C 1.50698 * 109.47184 * 299.99768 * 4 2 1 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 14 14 N 1.46496 * 109.47294 * 59.99994 * 13 2 1 15 15 C 1.34772 * 120.00630 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99512 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00391 * 179.97438 * 15 14 13 18 18 H 1.08996 * 109.47197 * 60.00568 * 17 15 14 19 19 C 1.53002 * 109.47303 * 300.00062 * 17 15 14 20 20 C 1.52996 * 109.46972 * 179.97438 * 19 17 15 21 21 C 1.52997 * 109.47131 * 60.00459 * 20 19 17 22 22 C 1.52999 * 109.47317 * 299.99507 * 21 20 19 23 23 H 1.08992 * 109.47635 * 180.02562 * 22 21 20 24 24 O 1.42900 * 109.47493 * 300.00486 * 22 21 20 25 25 C 1.53002 * 109.46999 * 180.02562 * 17 15 14 26 26 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 32 32 H 1.09001 * 109.47002 * 180.02562 * 4 2 1 33 33 H 1.08993 * 109.46955 * 59.99927 * 4 2 1 34 34 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 35 35 H 1.09001 * 109.46832 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47261 * 299.99863 * 13 2 1 37 37 H 0.97006 * 119.99755 * 359.97438 * 14 13 2 38 38 H 1.08992 * 109.46974 * 300.00213 * 19 17 15 39 39 H 1.08996 * 109.46550 * 60.00319 * 19 17 15 40 40 H 1.09004 * 109.47298 * 300.00176 * 20 19 17 41 41 H 1.09001 * 109.46993 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47502 * 60.00153 * 21 20 19 44 44 H 0.96708 * 113.99619 * 300.00236 * 24 22 21 45 45 H 1.09001 * 109.47600 * 300.00464 * 25 17 15 46 46 H 1.09004 * 109.47006 * 60.00243 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6264 -1.5515 3.8527 9 14 1.2471 0.3980 5.2572 10 1 1.7422 -0.3019 6.4698 11 1 -0.2379 0.3980 5.2567 12 1 1.7420 1.7982 5.2577 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6695 16 8 2.5750 -1.4769 -3.7807 17 6 1.3749 0.2192 -4.8999 18 1 1.7375 1.2471 -4.8999 19 6 -0.1551 0.2181 -4.9000 20 6 -0.6655 0.9395 -6.1489 21 6 -0.1550 0.2192 -7.3985 22 6 1.3750 0.2203 -7.3985 23 1 1.7388 -0.2925 -8.2888 24 8 1.8504 1.5679 -7.3978 25 6 1.8850 -0.5020 -6.1491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7209 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 2.9497 -2.0088 3.0607 35 1 3.1300 -0.7208 -1.2494 36 1 1.6767 -1.7490 -1.2492 37 1 0.9937 0.7578 -2.3564 38 1 -0.5177 -0.8098 -4.9000 39 1 -0.5188 0.7316 -4.0101 40 1 -0.3029 1.9675 -6.1485 41 1 -1.7556 0.9391 -6.1488 42 1 -0.5190 0.7329 -8.2882 43 1 -0.5176 -0.8088 -7.3990 44 1 1.5647 2.0861 -8.1627 45 1 2.9750 -0.5017 -6.1493 46 1 1.5220 -1.5299 -6.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489849078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -134.054415 kcal Electronic energy + Delta-G solvation = -23243.172147 eV Core-core repulsion = 19937.806334 eV Total energy + Delta-G solvation = -3305.365813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31940 -38.67540 -37.14615 -35.24183 -33.73861 -32.19624 -31.18887 -30.04920 -26.70107 -26.57858 -26.35227 -23.82763 -22.79094 -22.49708 -20.47829 -19.79505 -18.57860 -17.29917 -16.90913 -16.49542 -15.94292 -15.33828 -15.04555 -14.77281 -14.49450 -13.98938 -13.88266 -13.63700 -13.31676 -13.07685 -12.81941 -12.74520 -12.59082 -12.16840 -11.99568 -11.74306 -11.45012 -11.20444 -11.18048 -11.13108 -11.01484 -10.98996 -10.65002 -10.60155 -10.24511 -10.10165 -9.98886 -9.98098 -9.64888 -9.34382 -8.73565 -8.46275 -8.31126 -6.32424 -4.01492 2.83380 3.42325 3.44748 3.45424 3.64078 3.95773 4.37654 4.43135 4.55644 4.57271 4.87399 4.90840 5.01384 5.09602 5.18280 5.30756 5.37619 5.41587 5.47307 5.56178 5.61017 5.66489 5.69760 5.77431 5.88259 5.90434 6.04556 6.10756 6.13805 6.16020 6.22328 6.32371 6.51698 6.56364 6.72663 6.97214 6.99582 7.03557 7.35481 7.35776 7.50476 7.74958 8.22635 8.44366 8.48110 8.90762 9.69570 11.07514 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.003129 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.712345 B = 8944.990339 C = 9215.212467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.023 3.977 5 C -0.592 4.592 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.127 3.873 14 N -0.721 5.721 15 C 0.510 3.490 16 O -0.549 6.549 17 C -0.101 4.101 18 H 0.103 0.897 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.154 4.154 22 C 0.104 3.896 23 H 0.056 0.944 24 O -0.563 6.563 25 C -0.091 4.091 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.269 0.731 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.398 0.602 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.374 0.626 45 H 0.076 0.924 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 6.697 -22.881 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.183 4.183 4 C -0.014 4.014 5 C -0.630 4.630 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.004 3.996 14 N -0.372 5.372 15 C 0.296 3.704 16 O -0.426 6.426 17 C -0.123 4.123 18 H 0.121 0.879 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.191 4.191 22 C 0.046 3.954 23 H 0.074 0.926 24 O -0.368 6.368 25 C -0.129 4.129 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.221 0.779 45 H 0.094 0.906 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.162 5.741 -20.711 22.358 hybrid contribution -0.558 0.527 -2.135 2.269 sum -6.721 6.268 -22.846 24.625 Atomic orbital electron populations 1.21745 0.95096 1.01092 1.00349 1.20756 0.95582 0.95844 0.94453 1.21750 1.00457 0.95769 1.00369 1.19209 0.95651 0.95143 0.91435 1.21977 1.34845 1.14380 0.91786 0.92876 1.25788 0.95322 0.96562 1.01378 1.70771 1.32496 1.18280 1.33525 0.83584 0.75837 0.75307 0.75819 1.20885 1.21541 1.21537 1.21608 0.98803 0.95961 0.83247 1.46203 1.53179 1.31965 1.05866 1.20670 0.80281 0.84627 0.84823 1.90679 1.38352 1.26621 1.86997 1.21241 0.96717 1.01512 0.92808 0.87892 1.21531 0.93210 1.01527 0.98618 1.21426 1.00007 0.99966 0.93632 1.22276 0.96462 1.01830 0.98581 1.21839 0.92435 0.83186 0.97980 0.92560 1.86555 1.76898 1.23788 1.49578 1.21352 1.01925 0.98453 0.91127 0.91313 0.95129 0.93507 0.93479 0.95098 0.91307 0.97330 0.97342 0.92071 0.92014 0.92017 0.76670 0.91458 0.91306 0.91085 0.91765 0.91755 0.90915 0.77937 0.90563 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 4 C 0.02 0.57 3.35 -27.88 -0.09 0.48 16 5 C -0.59 -15.97 7.65 -34.44 -0.26 -16.24 16 6 H 0.05 1.39 5.68 -52.48 -0.30 1.09 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 8 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 9 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.13 2.30 4.56 -4.05 -0.02 2.28 16 14 N -0.72 -10.75 4.85 -60.30 -0.29 -11.04 16 15 C 0.51 7.78 7.15 -10.99 -0.08 7.70 16 16 O -0.55 -10.51 15.98 5.55 0.09 -10.42 16 17 C -0.10 -1.15 2.38 -91.77 -0.22 -1.37 16 18 H 0.10 1.17 7.68 -51.93 -0.40 0.77 16 19 C -0.11 -1.03 5.10 -26.73 -0.14 -1.17 16 20 C -0.11 -0.83 5.78 -26.73 -0.15 -0.99 16 21 C -0.15 -1.02 5.63 -26.73 -0.15 -1.17 16 22 C 0.10 0.84 3.78 -26.70 -0.10 0.74 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 O -0.56 -4.66 11.97 -35.23 -0.42 -5.09 16 25 C -0.09 -0.99 4.24 -26.70 -0.11 -1.10 16 26 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 27 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 31 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 32 H 0.01 0.22 8.01 -51.93 -0.42 -0.19 16 33 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 34 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.40 5.08 5.58 -40.82 -0.23 4.85 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 40 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.37 1.54 9.08 45.56 0.41 1.95 16 45 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 46 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -32.58 352.34 -7.82 -40.40 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.27 Total: 3.93 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.91 Total: -15.84 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.46 Total: -38.19 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.33 Total: -15.51 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.58 -7.82 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489849078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.652 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds