Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47519 * 2 1 4 4 C 1.52997 * 109.47021 * 239.99490 * 2 1 3 5 5 C 1.50703 * 109.46871 * 60.00563 * 4 2 1 6 6 H 1.08002 * 120.00145 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99964 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46925 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47477 * 119.99941 * 9 7 5 12 12 H 1.48500 * 109.47010 * 239.99860 * 9 7 5 13 13 C 1.53006 * 109.46934 * 120.00191 * 2 1 3 14 14 N 1.46497 * 109.46864 * 299.99356 * 13 2 1 15 15 C 1.34775 * 119.99881 * 180.02562 * 14 13 2 16 16 O 1.21277 * 120.00338 * 0.02562 * 15 14 13 17 17 C 1.50707 * 120.00250 * 180.02562 * 15 14 13 18 18 O 1.42903 * 109.46442 * 325.00015 * 17 15 14 19 19 C 1.53001 * 109.47316 * 84.99778 * 17 15 14 20 20 C 1.52997 * 109.47050 * 180.02562 * 19 17 15 21 21 C 1.53009 * 109.46843 * 300.00019 * 20 19 17 22 22 C 1.52998 * 109.46956 * 60.00175 * 21 20 19 23 23 C 1.52997 * 109.47201 * 299.99605 * 22 21 20 24 24 H 1.09005 * 109.47408 * 300.00225 * 1 2 3 25 25 H 1.08999 * 109.46972 * 59.99773 * 1 2 3 26 26 H 1.08995 * 109.47681 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47370 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47183 * 300.00097 * 3 2 1 29 29 H 1.08997 * 109.47209 * 59.99685 * 3 2 1 30 30 H 1.09001 * 109.47355 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47640 * 300.00459 * 4 2 1 32 32 H 0.96996 * 119.99921 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46749 * 179.97438 * 13 2 1 34 34 H 1.08994 * 109.47155 * 59.99892 * 13 2 1 35 35 H 0.97000 * 120.00429 * 0.02562 * 14 13 2 36 36 H 0.96700 * 114.00311 * 60.00230 * 18 17 15 37 37 H 1.08999 * 109.47164 * 300.00418 * 19 17 15 38 38 H 1.08997 * 109.47124 * 60.00119 * 19 17 15 39 39 H 1.08997 * 109.46932 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.47549 * 59.99780 * 20 19 17 41 41 H 1.09006 * 109.46634 * 300.00182 * 21 20 19 42 42 H 1.08997 * 109.46829 * 180.02562 * 21 20 19 43 43 H 1.09009 * 109.46785 * 179.97438 * 22 21 20 44 44 H 1.08997 * 109.47329 * 60.00303 * 22 21 20 45 45 H 1.08997 * 109.47549 * 300.00564 * 23 22 21 46 46 H 1.08997 * 109.46932 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 2.6280 -1.5505 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 0.4216 1.5643 -4.8530 11 1 2.4026 0.8660 -6.0654 12 1 0.4237 -0.5355 -6.0656 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5756 -1.4764 3.7809 17 6 1.3749 0.2194 4.9000 18 8 1.3260 1.6258 4.6516 19 6 -0.0273 -0.2869 5.2440 20 6 -0.5378 0.4345 6.4929 21 6 0.4065 0.1565 7.6643 22 6 1.8086 0.6628 7.3202 23 6 2.3192 -0.0587 6.0714 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1299 -0.7210 -1.2494 31 1 1.6766 -1.7489 -1.2492 32 1 2.8623 -1.8819 -4.7336 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9938 0.7579 2.3564 36 1 0.7449 1.8760 3.9203 37 1 -0.7000 -0.0885 4.4097 38 1 0.0100 -1.3597 5.4334 39 1 -1.5366 0.0735 6.7382 40 1 -0.5752 1.5072 6.3032 41 1 0.4438 -0.9163 7.8540 42 1 0.0425 0.6700 8.5541 43 1 2.4813 0.4651 8.1550 44 1 1.7712 1.7354 7.1305 45 1 2.3566 -1.1313 6.2611 46 1 3.3183 0.3017 5.8265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489856534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -126.159719 kcal Electronic energy + Delta-G solvation = -23546.175281 eV Core-core repulsion = 20241.151808 eV Total energy + Delta-G solvation = -3305.023473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66960 -38.34098 -37.00560 -35.52915 -33.55235 -32.08584 -31.04387 -30.24370 -27.19282 -26.56454 -26.40417 -23.81751 -22.98896 -22.51147 -20.43564 -19.90126 -18.82564 -17.50118 -16.45623 -16.33250 -16.01466 -15.05370 -14.88716 -14.69349 -14.48024 -14.18728 -13.73509 -13.64957 -13.15110 -13.14412 -12.79510 -12.57606 -12.45970 -12.29040 -12.10030 -12.04838 -11.57392 -11.20281 -11.15164 -11.06057 -10.89874 -10.84505 -10.73143 -10.68749 -10.45702 -10.28974 -10.23271 -9.92680 -9.51676 -9.12992 -8.93623 -8.81607 -8.38952 -6.02682 -4.04180 2.63009 3.22356 3.28220 3.36555 3.38714 3.99806 4.36838 4.42639 4.43926 4.55021 4.91223 4.96278 5.01182 5.17833 5.27107 5.32886 5.34757 5.45021 5.54793 5.57285 5.67895 5.69332 5.81029 5.86066 5.94003 5.98598 6.03550 6.10396 6.16515 6.23148 6.25735 6.33725 6.48629 6.58221 6.69113 7.00915 7.03163 7.07686 7.18819 7.60533 7.65616 7.72564 7.95818 8.28218 8.37747 9.00817 9.59244 11.08808 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040092 B = 0.003305 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.234732 B = 8470.322896 C = 8682.567639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.716 5.716 15 C 0.486 3.514 16 O -0.537 6.537 17 C 0.124 3.876 18 O -0.543 6.543 19 C -0.141 4.141 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.091 4.091 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.373 0.627 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 5.718 20.284 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.369 5.369 15 C 0.271 3.729 16 O -0.414 6.414 17 C 0.080 3.920 18 O -0.349 6.349 19 C -0.180 4.180 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.129 4.129 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.221 0.779 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.199 4.898 20.716 21.913 hybrid contribution -0.917 0.666 -1.657 2.008 sum -6.115 5.565 19.059 20.775 Atomic orbital electron populations 1.21760 0.95279 1.01151 1.00187 1.20914 0.95440 0.95924 0.95048 1.21759 1.00639 0.95787 1.00228 1.19092 0.96390 0.95207 0.89472 1.21214 1.31158 1.12089 0.90490 0.92186 1.25019 0.95296 0.95078 0.99122 1.69973 1.36926 1.23078 1.23373 0.86590 0.78620 0.79671 0.83427 1.19786 1.21110 1.21129 1.21664 0.99048 0.95988 0.82860 1.46203 1.52881 1.31692 1.06088 1.21341 0.80890 0.85298 0.85378 1.90700 1.37509 1.26480 1.86749 1.21478 0.96413 0.81020 0.93065 1.86638 1.70349 1.21397 1.56476 1.22166 0.94709 1.01752 0.99334 1.21439 0.98452 1.01083 0.94028 1.21564 0.95358 1.01171 0.97767 1.21483 0.96122 1.00999 0.96712 1.21345 0.97836 1.01689 0.92037 0.95426 0.91318 0.93350 0.93317 0.91368 0.95272 0.96328 0.96356 0.93064 0.91728 0.91749 0.77045 0.77875 0.91137 0.90247 0.91762 0.91080 0.92024 0.91922 0.91830 0.90977 0.89613 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.13 2.22 4.56 -4.04 -0.02 2.20 16 14 N -0.72 -10.04 4.87 -60.29 -0.29 -10.33 16 15 C 0.49 7.18 6.73 -10.98 -0.07 7.10 16 16 O -0.54 -10.04 16.10 5.56 0.09 -9.95 16 17 C 0.12 1.39 0.92 -91.77 -0.08 1.31 16 18 O -0.54 -5.52 11.52 -35.23 -0.41 -5.92 16 19 C -0.14 -1.32 4.90 -26.73 -0.13 -1.45 16 20 C -0.11 -0.88 5.78 -26.73 -0.15 -1.04 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -1.03 5.78 -26.73 -0.15 -1.18 16 23 C -0.09 -1.02 4.48 -26.73 -0.12 -1.14 16 24 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 25 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.47 4.66 -40.82 -0.19 4.28 16 36 H 0.37 2.68 7.58 45.56 0.35 3.02 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 45 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -31.02 351.74 -7.83 -38.85 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.38 Total: 3.50 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.85 Total: -11.92 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.44 Total: -35.87 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.32 Total: -15.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.02 -7.83 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489856534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.311 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds