Wall clock time and date at job start Tue Mar 31 2020 05:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53011 * 109.46931 * 2 1 4 4 C 1.52998 * 109.47545 * 240.00242 * 2 1 3 5 5 C 1.50699 * 109.47114 * 59.99619 * 4 2 1 6 6 H 1.08001 * 120.00060 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00101 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00177 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99933 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47395 * 89.99861 * 9 7 5 11 11 H 1.48505 * 109.47347 * 209.99911 * 9 7 5 12 12 H 1.48497 * 109.47198 * 329.99775 * 9 7 5 13 13 C 1.53001 * 109.47216 * 119.99896 * 2 1 3 14 14 N 1.46500 * 109.47115 * 300.00141 * 13 2 1 15 15 C 1.34771 * 120.00116 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99750 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00418 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46986 * 275.00230 * 17 15 14 19 19 O 1.42905 * 109.46961 * 35.00026 * 17 15 14 20 20 C 1.52997 * 109.47234 * 155.00205 * 17 15 14 21 21 C 1.53784 * 113.61270 * 277.49719 * 20 17 15 22 22 C 1.53779 * 87.08045 * 220.02125 * 21 20 17 23 23 C 1.53779 * 87.08402 * 25.43458 * 22 21 20 24 24 H 1.09000 * 109.47068 * 300.00058 * 1 2 3 25 25 H 1.09000 * 109.47037 * 60.00088 * 1 2 3 26 26 H 1.08997 * 109.46523 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46906 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46728 * 300.00091 * 3 2 1 29 29 H 1.09000 * 109.46836 * 59.99801 * 3 2 1 30 30 H 1.08994 * 109.47470 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.46759 * 300.00120 * 4 2 1 32 32 H 0.97000 * 120.00244 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46803 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47031 * 60.00280 * 13 2 1 35 35 H 0.96998 * 120.00062 * 0.02562 * 14 13 2 36 36 H 1.09004 * 109.47525 * 299.99545 * 18 17 15 37 37 H 1.09004 * 109.47333 * 59.99876 * 18 17 15 38 38 H 1.09000 * 109.47214 * 179.97438 * 18 17 15 39 39 H 0.96701 * 113.99828 * 60.00033 * 19 17 15 40 40 H 1.08994 * 112.91116 * 48.75089 * 20 17 15 41 41 H 1.09002 * 113.61478 * 334.57090 * 21 20 17 42 42 H 1.09004 * 113.61162 * 105.47268 * 21 20 17 43 43 H 1.09006 * 113.61307 * 270.88660 * 22 21 20 44 44 H 1.09007 * 113.61642 * 139.98417 * 22 21 20 45 45 H 1.08997 * 113.61646 * 220.02209 * 23 22 21 46 46 H 1.08998 * 113.69354 * 89.12517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7319 8 7 1.4317 0.1376 -4.8057 9 14 2.9434 -2.0016 -3.9033 10 1 2.0840 -3.2119 -3.9487 11 1 3.7354 -1.9096 -5.1562 12 1 3.8638 -2.0913 -2.7414 13 6 2.0401 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5742 -1.4774 3.7807 17 6 1.3741 0.2187 4.9000 18 6 2.3179 1.3726 5.2444 19 8 0.0641 0.7328 4.6514 20 6 1.3223 -0.7647 6.0709 21 6 0.0524 -1.6317 6.0915 22 6 0.0424 -1.4420 7.6175 23 6 0.8196 -0.1362 7.3814 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1301 -0.7208 -1.2494 31 1 1.6768 -1.7488 -1.2492 32 1 1.6654 -0.1942 -5.6868 33 1 3.1301 -0.7208 1.2494 34 1 1.6768 -1.7488 1.2492 35 1 0.9937 0.7578 2.3564 36 1 3.3171 0.9805 5.4341 37 1 2.3548 2.0732 4.4102 38 1 1.9540 1.8864 6.1341 39 1 -0.5882 0.0553 4.4264 40 1 2.2432 -1.3363 6.1859 41 1 -0.7985 -1.1719 5.5887 42 1 0.2224 -2.6626 5.7807 43 1 0.6135 -2.1989 8.1553 44 1 -0.9540 -1.2882 8.0319 45 1 1.6090 0.0402 8.1119 46 1 0.1797 0.7333 7.2313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489884670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:12 Heat of formation + Delta-G solvation = -88.167782 kcal Electronic energy + Delta-G solvation = -23565.278251 eV Core-core repulsion = 20261.902232 eV Total energy + Delta-G solvation = -3303.376019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82442 -38.79338 -37.14566 -36.17754 -33.55899 -32.09230 -31.58250 -27.86962 -26.68537 -26.56512 -26.19365 -25.52611 -23.40714 -22.03295 -20.24935 -19.47850 -18.71071 -17.71704 -17.00706 -16.67769 -15.81032 -15.46301 -15.37587 -14.47705 -14.24635 -13.94167 -13.70614 -13.45336 -13.30908 -12.78993 -12.74356 -12.65136 -12.51044 -12.32062 -12.23533 -12.15450 -11.85444 -11.54537 -11.25799 -11.13395 -11.01212 -10.81284 -10.63046 -10.57958 -10.50429 -10.29922 -9.98397 -9.79423 -9.69826 -9.25459 -8.99887 -8.83084 -8.54539 -6.05168 -4.02496 2.62013 3.23400 3.30508 3.38650 3.42585 3.88928 4.23864 4.33553 4.44686 4.46376 4.57199 4.82187 4.93276 5.10764 5.27354 5.36496 5.38396 5.47737 5.50390 5.50927 5.54207 5.61414 5.63195 5.66345 5.73429 5.88949 5.97813 6.09705 6.10859 6.15515 6.25392 6.30602 6.46835 6.58639 6.67764 6.88696 7.00399 7.04069 7.16727 7.18734 7.35192 7.66885 7.78657 8.30174 8.52060 8.98963 9.57506 11.07583 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.003527 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.882835 B = 7935.954022 C = 8134.024629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.124 3.876 14 N -0.711 5.711 15 C 0.484 3.516 16 O -0.542 6.542 17 C 0.128 3.872 18 C -0.134 4.134 19 O -0.548 6.548 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.130 4.130 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.379 0.621 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 0.746 23.259 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.001 3.999 14 N -0.363 5.363 15 C 0.268 3.732 16 O -0.419 6.419 17 C 0.084 3.916 18 C -0.192 4.192 19 O -0.356 6.356 20 C -0.142 4.142 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.167 4.167 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.241 0.759 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.613 0.597 23.245 23.309 hybrid contribution 0.088 -1.081 -0.581 1.230 sum -1.525 -0.484 22.665 22.721 Atomic orbital electron populations 1.21778 0.94768 1.01178 1.00900 1.20690 0.95859 0.95926 0.93842 1.21776 1.00394 0.95582 1.00863 1.19588 0.96259 0.95458 0.92645 1.21080 1.31850 1.13350 0.88609 0.90373 1.24997 0.95697 0.96746 0.95983 1.69900 1.45926 1.40576 0.97885 0.86860 0.81330 0.83932 0.77650 1.20377 1.21486 1.19025 1.21669 0.98895 0.96015 0.83372 1.46202 1.52615 1.31947 1.05576 1.21327 0.81410 0.84874 0.85574 1.90689 1.38235 1.26109 1.86889 1.21305 0.84226 0.94536 0.91522 1.21692 0.97866 0.96501 1.03105 1.86569 1.18730 1.38366 1.91914 1.23087 0.99992 0.96917 0.94225 1.22955 0.97474 1.00485 0.97028 1.22741 1.00688 0.98042 0.96131 1.22923 0.99896 0.97683 0.96244 0.94879 0.90846 0.93482 0.93451 0.90839 0.94924 0.96402 0.96863 0.92785 0.91864 0.91888 0.75857 0.90556 0.91304 0.90601 0.77136 0.87359 0.90094 0.91085 0.90221 0.91380 0.91504 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.06 -1.14 0.54 -154.50 -0.08 -1.23 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.94 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.12 2.06 4.56 -4.04 -0.02 2.05 16 14 N -0.71 -9.92 4.87 -60.30 -0.29 -10.21 16 15 C 0.48 6.79 6.68 -10.99 -0.07 6.71 16 16 O -0.54 -9.50 15.95 5.55 0.09 -9.41 16 17 C 0.13 1.36 0.90 -91.77 -0.08 1.28 16 18 C -0.13 -1.28 8.63 37.16 0.32 -0.96 16 19 O -0.55 -5.29 11.56 -35.23 -0.41 -5.70 16 20 C -0.12 -1.20 2.74 -89.80 -0.25 -1.45 16 21 C -0.14 -1.25 7.40 -25.92 -0.19 -1.45 16 22 C -0.14 -1.05 8.08 -25.92 -0.21 -1.25 16 23 C -0.13 -1.02 6.58 -25.92 -0.17 -1.19 16 24 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 25 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 29 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 5.10 5.60 -40.82 -0.23 4.87 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.62 7.45 -51.93 -0.39 0.23 16 39 H 0.38 2.96 6.81 45.56 0.31 3.27 16 40 H 0.11 1.22 7.62 -51.93 -0.40 0.83 16 41 H 0.08 0.62 5.90 -51.93 -0.31 0.32 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.71 7.77 -51.93 -0.40 0.30 16 LS Contribution 352.07 15.07 5.31 5.31 Total: -1.00 -30.72 352.07 -7.11 -37.83 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.28 Total: 5.41 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.62 Total: -13.63 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.48 Total: -36.64 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.32 Total: -15.10 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.72 -7.11 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489884670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.336 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds