Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47296 * 2 1 4 4 C 1.53000 * 109.46598 * 240.00368 * 2 1 3 5 5 C 1.50706 * 109.47182 * 60.00392 * 4 2 1 6 6 H 1.07999 * 119.99769 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99988 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00113 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00025 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46976 * 90.00502 * 9 7 5 11 11 H 1.48498 * 109.47031 * 210.00330 * 9 7 5 12 12 H 1.48499 * 109.47264 * 330.00704 * 9 7 5 13 13 C 1.53002 * 109.47139 * 120.00585 * 2 1 3 14 14 N 1.46494 * 109.47098 * 299.99763 * 13 2 1 15 15 C 1.34773 * 119.99816 * 180.02562 * 14 13 2 16 16 O 1.21282 * 120.00521 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99968 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46896 * 85.00072 * 17 15 14 19 19 O 1.42902 * 109.47245 * 325.00514 * 17 15 14 20 20 C 1.52994 * 109.47459 * 204.99728 * 17 15 14 21 21 C 1.53782 * 113.61734 * 180.02562 * 20 17 15 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 17 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 1.09008 * 109.46977 * 299.99830 * 1 2 3 25 25 H 1.09002 * 109.47714 * 59.98879 * 1 2 3 26 26 H 1.08999 * 109.47665 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47110 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47738 * 300.01015 * 3 2 1 29 29 H 1.09010 * 109.46842 * 60.00696 * 3 2 1 30 30 H 1.09003 * 109.46868 * 179.97438 * 4 2 1 31 31 H 1.08995 * 109.47411 * 300.00070 * 4 2 1 32 32 H 0.96998 * 120.00331 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46580 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.46960 * 59.99969 * 13 2 1 35 35 H 0.97006 * 120.00410 * 359.97438 * 14 13 2 36 36 H 1.08994 * 109.47196 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.47251 * 300.00245 * 18 17 15 38 38 H 1.09006 * 109.47175 * 60.00179 * 18 17 15 39 39 H 0.96695 * 113.99336 * 299.99482 * 19 17 15 40 40 H 1.08997 * 112.90864 * 311.25928 * 20 17 15 41 41 H 1.09001 * 113.61250 * 105.47049 * 21 20 17 42 42 H 1.08997 * 113.61225 * 334.56890 * 21 20 17 43 43 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 44 44 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 45 45 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 46 46 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0106 -2.4798 6 1 0.9164 0.8673 -2.3805 7 6 1.8701 -0.4819 -3.7320 8 7 1.4313 0.1379 -4.8058 9 14 2.9439 -2.0008 -3.9036 10 1 2.0852 -3.2116 -3.9486 11 1 3.7354 -1.9085 -5.1567 12 1 3.8646 -2.0899 -2.7419 13 6 2.0400 -0.7214 1.2492 14 7 1.5517 -0.0309 2.4454 15 6 1.8778 -0.4912 3.6694 16 8 2.5750 -1.4773 3.7806 17 6 1.3760 0.2195 4.9000 18 6 -0.0265 -0.2859 5.2444 19 8 1.3278 1.6259 4.6515 20 6 2.3204 -0.0596 6.0709 21 6 1.8951 0.6231 7.3816 22 6 3.3851 0.9212 7.6179 23 6 3.5634 0.8486 6.0922 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9564 -0.8898 29 1 1.6768 1.9562 0.8901 30 1 3.1299 -0.7208 -1.2496 31 1 1.6765 -1.7488 -1.2494 32 1 1.6656 -0.1934 -5.6869 33 1 3.1300 -0.7217 1.2489 34 1 1.6766 -1.7491 1.2491 35 1 0.9944 0.7581 2.3565 36 1 -0.3897 0.2284 6.1341 37 1 -0.6994 -0.0871 4.4102 38 1 0.0102 -1.3587 5.4339 39 1 2.1839 2.0150 4.4265 40 1 2.5525 -1.1184 6.1857 41 1 1.4658 -0.0628 8.1118 42 1 1.2895 1.5169 7.2318 43 1 3.5719 1.9117 8.0327 44 1 3.9083 0.1312 8.1568 45 1 3.4147 1.8041 5.5893 46 1 4.4790 0.3443 5.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489884672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -88.320852 kcal Electronic energy + Delta-G solvation = -23564.335557 eV Core-core repulsion = 20260.952901 eV Total energy + Delta-G solvation = -3303.382657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81756 -38.78760 -37.14535 -36.17603 -33.55893 -32.09179 -31.58189 -27.86899 -26.68370 -26.56524 -26.18975 -25.53129 -23.40617 -22.03255 -20.24913 -19.47776 -18.71037 -17.71532 -17.00594 -16.67727 -15.81048 -15.46227 -15.37574 -14.47110 -14.25864 -13.93024 -13.70694 -13.45677 -13.30959 -12.78924 -12.74362 -12.65164 -12.50774 -12.30768 -12.26335 -12.14167 -11.85311 -11.54374 -11.25885 -11.13180 -11.01271 -10.81222 -10.63103 -10.58168 -10.50460 -10.29752 -9.98438 -9.79488 -9.69733 -9.25446 -8.99873 -8.83054 -8.54512 -6.05144 -4.02498 2.62031 3.23417 3.30578 3.38658 3.42505 3.88988 4.23745 4.33285 4.44670 4.46461 4.57363 4.82196 4.93281 5.10729 5.27361 5.36489 5.38435 5.47798 5.50407 5.50936 5.54201 5.61443 5.63190 5.66336 5.73407 5.88950 5.97707 6.09697 6.10876 6.15532 6.25416 6.30541 6.46870 6.58642 6.67784 6.88688 7.00417 7.04126 7.16804 7.18750 7.35144 7.66883 7.78641 8.30174 8.52064 8.98957 9.57517 11.07604 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033568 B = 0.003527 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.939602 B = 7936.603317 C = 8134.611027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.123 3.877 14 N -0.711 5.711 15 C 0.484 3.516 16 O -0.542 6.542 17 C 0.128 3.872 18 C -0.134 4.134 19 O -0.548 6.548 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.139 4.139 23 C -0.142 4.142 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.379 0.621 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 2.553 23.260 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.000 4.000 14 N -0.363 5.363 15 C 0.268 3.732 16 O -0.419 6.419 17 C 0.084 3.916 18 C -0.192 4.192 19 O -0.356 6.356 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.176 4.176 23 C -0.179 4.179 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.241 0.759 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.026 1.752 23.247 23.313 hybrid contribution 0.951 -0.471 -0.580 1.209 sum 0.977 1.281 22.667 22.724 Atomic orbital electron populations 1.21779 0.94768 1.01226 1.00865 1.20686 0.95860 0.95923 0.93843 1.21771 1.00343 0.95588 1.00895 1.19591 0.96245 0.95477 0.92646 1.21081 1.31834 1.13358 0.88609 0.90373 1.24998 0.95699 0.96741 0.95983 1.69901 1.45923 1.40582 0.97885 0.86860 0.81332 0.83939 0.77638 1.20374 1.21486 1.19033 1.21666 0.98830 0.96086 0.83372 1.46202 1.52609 1.31953 1.05574 1.21327 0.80790 0.85491 0.85575 1.90688 1.37785 1.26558 1.86887 1.21306 0.97580 0.81181 0.91521 1.21693 0.92867 1.01497 1.03106 1.86568 1.36748 1.20341 1.91918 1.23116 0.95518 1.01366 0.94214 1.22921 0.96650 1.00925 0.96244 1.22740 0.96878 1.01855 0.96135 1.22982 0.98286 0.99649 0.97018 0.94922 0.90848 0.93454 0.93477 0.90846 0.94880 0.96410 0.96851 0.92786 0.91884 0.91873 0.75852 0.90600 0.91303 0.90557 0.77139 0.87369 0.91489 0.89305 0.91394 0.90235 0.90102 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.06 -1.14 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.93 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.12 2.06 4.56 -4.04 -0.02 2.05 16 14 N -0.71 -9.92 4.87 -60.30 -0.29 -10.21 16 15 C 0.48 6.79 6.68 -10.98 -0.07 6.71 16 16 O -0.54 -9.50 15.95 5.56 0.09 -9.41 16 17 C 0.13 1.36 0.90 -91.77 -0.08 1.28 16 18 C -0.13 -1.28 8.63 37.16 0.32 -0.96 16 19 O -0.55 -5.29 11.56 -35.23 -0.41 -5.70 16 20 C -0.12 -1.20 2.74 -89.71 -0.25 -1.45 16 21 C -0.13 -1.02 6.58 -25.92 -0.17 -1.19 16 22 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 23 C -0.14 -1.25 7.41 -25.82 -0.19 -1.45 16 24 H 0.03 0.47 6.86 -51.92 -0.36 0.12 16 25 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 29 H 0.03 0.47 6.86 -51.92 -0.36 0.11 16 30 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.40 5.10 5.60 -40.82 -0.23 4.87 16 36 H 0.08 0.62 7.45 -51.93 -0.39 0.23 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.38 2.96 6.81 45.56 0.31 3.27 16 40 H 0.11 1.22 7.62 -51.93 -0.40 0.83 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.71 7.77 -51.93 -0.40 0.30 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.62 5.91 -51.93 -0.31 0.31 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -30.73 352.10 -7.11 -37.83 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.28 Total: 5.41 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.62 Total: -13.63 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.48 Total: -36.64 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.32 Total: -15.10 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.73 -7.11 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489884672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.488 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds