Wall clock time and date at job start Tue Mar 31 2020 06:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20822 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99763 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47103 * 300.00083 * 5 3 2 7 7 C 1.52997 * 109.47238 * 60.00276 * 5 3 2 8 8 C 1.53002 * 109.46925 * 180.02562 * 5 3 2 9 9 C 1.52996 * 109.47340 * 180.02562 * 8 5 3 10 10 N 1.46896 * 109.47489 * 180.02562 * 9 8 5 11 11 C 1.46850 * 110.99581 * 294.20504 * 10 9 8 12 12 C 1.53037 * 109.52222 * 174.16030 * 11 10 9 13 13 C 1.53110 * 109.27886 * 59.18039 * 12 11 10 14 14 C 1.50704 * 109.57526 * 182.40863 * 13 12 11 15 15 H 1.08005 * 119.99821 * 119.71300 * 14 13 12 16 16 C 1.37871 * 120.00208 * 299.71690 * 14 13 12 17 17 N 1.31520 * 120.00316 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99813 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47087 * 90.00259 * 18 16 14 20 20 H 1.48503 * 109.46882 * 210.00283 * 18 16 14 21 21 H 1.48499 * 109.47209 * 330.00323 * 18 16 14 22 22 C 1.53115 * 109.16207 * 302.34262 * 13 12 11 23 23 C 1.46841 * 111.00243 * 169.99684 * 10 9 8 24 24 H 1.09003 * 109.46718 * 60.00123 * 1 2 3 25 25 H 1.08996 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47123 * 300.00357 * 1 2 3 27 27 H 1.08992 * 109.47280 * 59.99899 * 6 5 3 28 28 H 1.09002 * 109.46777 * 180.02562 * 6 5 3 29 29 H 1.09000 * 109.47140 * 300.00046 * 6 5 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 7 5 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 7 5 3 32 32 H 1.09001 * 109.46832 * 299.99686 * 7 5 3 33 33 H 1.09004 * 109.46930 * 299.99901 * 8 5 3 34 34 H 1.09004 * 109.47059 * 59.99503 * 8 5 3 35 35 H 1.09004 * 109.46785 * 299.99692 * 9 8 5 36 36 H 1.09000 * 109.47196 * 59.99588 * 9 8 5 37 37 H 1.08993 * 109.46279 * 294.17691 * 11 10 9 38 38 H 1.09007 * 109.46147 * 54.14687 * 11 10 9 39 39 H 1.09009 * 109.50293 * 299.23577 * 12 11 10 40 40 H 1.09001 * 109.50613 * 179.12577 * 12 11 10 41 41 H 1.08999 * 109.52467 * 62.25095 * 13 12 11 42 42 H 0.96997 * 119.99554 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.50726 * 297.71425 * 22 13 12 44 44 H 1.09002 * 109.50975 * 177.59679 * 22 13 12 45 45 H 1.09001 * 109.46094 * 305.85116 * 23 10 9 46 46 H 1.09000 * 109.46173 * 65.83637 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1139 0.5809 1.2483 7 6 4.1129 0.5815 -1.2502 8 6 4.0003 2.7420 0.0002 9 6 5.5281 2.8220 -0.0011 10 7 5.9447 4.2307 0.0003 11 6 5.5538 4.8962 -1.2490 12 6 5.8718 6.3901 -1.1538 13 6 7.3713 6.5728 -0.9039 14 6 7.6826 8.0394 -0.7502 15 1 8.1155 8.4060 0.1689 16 6 7.4146 8.9129 -1.7826 17 7 7.6867 10.1927 -1.6486 18 14 6.6664 8.2786 -3.3724 19 1 5.1853 8.3280 -3.2767 20 1 7.1179 9.1265 -4.5048 21 1 7.1012 6.8769 -3.5994 22 6 7.7616 5.8300 0.3768 23 6 7.3888 4.3522 0.2373 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.8048 -0.4643 1.2482 28 1 5.2024 0.6383 1.2480 29 1 3.7245 1.0748 2.1385 30 1 3.7228 1.0758 -2.1399 31 1 5.2014 0.6388 -1.2508 32 1 3.8038 -0.4638 -1.2503 33 1 3.6102 3.2366 -0.8894 34 1 3.6108 3.2355 0.8906 35 1 5.9186 2.3272 0.8883 36 1 5.9171 2.3285 -0.8917 37 1 6.1059 4.4596 -2.0812 38 1 4.4845 4.7622 -1.4127 39 1 5.3093 6.8302 -0.3303 40 1 5.5959 6.8811 -2.0870 41 1 7.9329 6.1676 -1.7456 42 1 7.4985 10.8071 -2.3752 43 1 7.2289 6.2612 1.2244 44 1 8.8359 5.9207 0.5372 45 1 7.6523 3.8231 1.1532 46 1 7.9323 3.9184 -0.6020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526985511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:53 Heat of formation + Delta-G solvation = -96.146223 kcal Electronic energy + Delta-G solvation = -23398.476539 eV Core-core repulsion = 20094.754549 eV Total energy + Delta-G solvation = -3303.721990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97582 -38.78475 -37.17248 -36.26024 -33.83958 -31.68944 -30.25166 -28.90965 -27.85989 -27.69594 -25.87119 -24.29144 -22.59641 -22.23855 -20.95544 -19.22452 -18.79984 -17.48418 -17.00846 -16.64647 -16.61283 -15.58588 -15.10510 -14.60983 -14.31005 -14.18041 -13.77862 -13.72291 -13.44361 -13.05668 -12.98375 -12.87823 -12.68227 -12.37427 -12.22003 -12.15757 -11.76771 -11.62510 -11.43290 -11.31432 -11.05750 -10.96343 -10.83071 -10.63434 -10.49449 -10.40749 -10.02056 -9.84432 -9.55412 -9.02088 -8.87286 -8.46802 -7.90136 -6.01838 -3.99843 2.00982 2.43872 3.31066 3.40273 3.42582 4.11978 4.35636 4.45751 4.53202 4.56590 4.81020 4.88787 4.93345 5.08654 5.20831 5.25217 5.29761 5.37326 5.46288 5.50213 5.51038 5.56284 5.68841 5.75478 5.79302 5.83765 5.89575 5.95103 6.10023 6.14912 6.16447 6.20582 6.31175 6.42515 6.50266 6.79120 6.88908 6.99102 7.27607 7.47282 7.53572 7.57496 7.69709 7.84600 8.59377 9.02999 9.61506 11.11789 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026839 B = 0.003684 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.025407 B = 7597.583772 C = 8135.410057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.500 6.500 5 C -0.050 4.050 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.099 4.099 9 C 0.054 3.946 10 N -0.533 5.533 11 C 0.053 3.947 12 C -0.116 4.116 13 C 0.013 3.987 14 C -0.509 4.509 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.887 3.113 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.268 1.268 22 C -0.096 4.096 23 C 0.058 3.942 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.829 -24.196 2.978 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.386 6.386 5 C -0.052 4.052 6 C -0.200 4.200 7 C -0.202 4.202 8 C -0.137 4.137 9 C -0.074 4.074 10 N -0.258 5.258 11 C -0.075 4.075 12 C -0.154 4.154 13 C -0.006 4.006 14 C -0.547 4.547 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.193 1.193 22 C -0.134 4.134 23 C -0.070 4.070 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.299 -23.477 3.277 25.845 hybrid contribution -0.405 -0.481 -1.651 1.767 sum -10.704 -23.958 1.626 26.291 Atomic orbital electron populations 1.23260 0.76599 1.03547 1.02604 1.86499 1.23173 1.33649 1.84173 1.23842 0.91917 0.81223 0.71989 1.90691 1.67041 1.36342 1.44567 1.20552 0.86436 0.99112 0.99109 1.21926 1.02264 1.00500 0.95316 1.21944 1.02315 1.00579 0.95335 1.21552 0.95914 0.91641 1.04591 1.22186 0.94456 0.90092 1.00617 1.61877 1.15915 1.12185 1.35836 1.22248 0.99340 0.96792 0.89091 1.22011 1.00587 0.91978 1.00824 1.19180 0.91150 0.96595 0.93657 1.21073 1.41255 0.89976 1.02358 0.90879 1.25028 0.95246 0.94721 0.98332 1.69907 1.48811 1.02596 1.32945 0.86852 0.79321 0.78718 0.83355 1.20549 1.22637 1.19274 1.21495 0.99856 0.91876 1.00186 1.22173 0.86521 0.99169 0.99088 0.91954 0.88173 0.91909 0.91415 0.90469 0.91847 0.92075 0.90476 0.91332 0.90812 0.89993 0.90687 0.94895 0.95805 0.91698 0.91249 0.93504 0.96137 0.92782 0.91786 0.92415 0.91878 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.57 10.37 -39.26 -0.41 -3.98 16 3 C 0.47 5.53 6.55 36.01 0.24 5.76 16 4 O -0.50 -7.52 15.73 -18.75 -0.29 -7.81 16 5 C -0.05 -0.51 0.74 -155.66 -0.11 -0.62 16 6 C -0.14 -1.15 8.05 37.16 0.30 -0.85 16 7 C -0.14 -1.23 8.05 37.16 0.30 -0.93 16 8 C -0.10 -1.23 3.49 -26.73 -0.09 -1.32 16 9 C 0.05 0.68 4.25 -3.83 -0.02 0.67 16 10 N -0.53 -8.75 4.66 -234.67 -1.09 -9.84 16 11 C 0.05 0.96 5.29 -3.83 -0.02 0.94 16 12 C -0.12 -2.58 4.84 -26.66 -0.13 -2.71 16 13 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 14 C -0.51 -14.48 9.15 -34.44 -0.31 -14.79 16 15 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 16 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 17 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 18 Si 0.89 22.44 24.37 -169.99 -4.14 18.30 16 19 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 22 C -0.10 -1.93 5.32 -26.65 -0.14 -2.07 16 23 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 24 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.07 0.48 8.11 -51.93 -0.42 0.05 16 28 H 0.08 0.55 6.43 -51.93 -0.33 0.22 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 32 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.07 1.03 6.39 -51.93 -0.33 0.70 16 34 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.07 0.82 6.27 -51.93 -0.33 0.49 16 36 H 0.03 0.39 6.41 -51.93 -0.33 0.06 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.11 6.21 -51.93 -0.32 0.79 16 39 H 0.07 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.05 1.10 3.39 -51.93 -0.18 0.92 16 41 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -32.53 347.32 -7.17 -39.70 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.03 Total: -2.57 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 0.79 Total: -11.64 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.32 Total: -37.23 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.70 Total: -11.79 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.53 -7.17 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526985511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.449 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds