Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00053 * 2 1 4 4 H 1.48494 * 109.47510 * 239.99899 * 3 2 1 5 5 H 1.48506 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47275 * 119.99379 * 3 2 1 7 7 C 1.37878 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.53121 * 109.52043 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.27991 * 182.37562 * 10 9 7 12 12 N 1.46857 * 109.52204 * 59.18001 * 11 10 9 13 13 C 1.46894 * 111.00070 * 174.16135 * 12 11 10 14 14 C 1.52995 * 109.47049 * 176.24730 * 13 12 11 15 15 O 1.42900 * 109.47345 * 62.32105 * 14 13 12 16 16 C 1.42900 * 114.00255 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47180 * 179.97438 * 16 15 14 18 18 H 1.09007 * 110.67637 * 56.50409 * 17 16 15 19 19 C 1.55225 * 110.64339 * 179.36345 * 17 16 15 20 20 C 1.54811 * 101.98314 * 155.43443 * 19 17 16 21 21 C 1.54090 * 104.30911 * 339.26385 * 20 19 17 22 22 O 1.43741 * 107.29330 * 357.90207 * 21 20 19 23 23 C 1.46846 * 111.19619 * 298.26238 * 12 11 10 24 24 C 1.53030 * 109.52746 * 61.73892 * 23 12 11 25 25 H 0.97002 * 120.00168 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.52639 * 300.12293 * 9 7 2 27 27 H 1.09003 * 109.50007 * 62.43723 * 10 9 7 28 28 H 1.08998 * 109.53953 * 302.34377 * 10 9 7 29 29 H 1.08999 * 109.46303 * 299.17035 * 11 10 9 30 30 H 1.08998 * 109.45624 * 179.18877 * 11 10 9 31 31 H 1.09000 * 109.47466 * 56.24569 * 13 12 11 32 32 H 1.09004 * 109.47290 * 296.24821 * 13 12 11 33 33 H 1.09002 * 109.47421 * 302.32035 * 14 13 12 34 34 H 1.08999 * 109.47226 * 182.31929 * 14 13 12 35 35 H 1.08999 * 109.47392 * 59.99602 * 16 15 14 36 36 H 1.09000 * 109.46762 * 299.99116 * 16 15 14 37 37 H 1.09003 * 110.88946 * 37.30735 * 19 17 16 38 38 H 1.08996 * 111.02399 * 273.62552 * 19 17 16 39 39 H 1.09003 * 110.48591 * 220.51554 * 20 19 17 40 40 H 1.09003 * 110.48878 * 98.01136 * 20 19 17 41 41 H 1.08998 * 109.88272 * 117.32792 * 21 20 19 42 42 H 1.09001 * 109.88099 * 238.47898 * 21 20 19 43 43 H 1.08996 * 109.45947 * 181.75743 * 23 12 11 44 44 H 1.09001 * 109.46443 * 301.72230 * 23 12 11 45 45 H 1.08999 * 109.50436 * 180.88086 * 24 23 12 46 46 H 1.09000 * 109.50163 * 60.75864 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4752 -4.9851 -0.0593 12 7 0.6533 -5.0195 -1.2759 13 6 0.0069 -6.3287 -1.4377 14 6 -0.9116 -6.2962 -2.6608 15 8 -0.1338 -6.0513 -3.8343 16 6 -0.9000 -6.0009 -5.0395 17 6 0.0304 -5.7343 -6.2246 18 1 0.8134 -6.4908 -6.2770 19 6 -0.7731 -5.6899 -7.5519 20 6 0.1387 -4.8195 -8.4506 21 6 1.0256 -4.0450 -7.4568 22 8 0.6053 -4.4131 -6.1324 23 6 -0.3404 -3.9384 -1.2761 24 6 0.3752 -2.5859 -1.2525 25 1 -0.4850 0.8400 -0.0004 26 1 0.6220 -2.5567 0.8889 27 1 2.8428 -3.6320 0.9114 28 1 2.8996 -3.5844 -0.8673 29 1 0.8315 -5.0705 0.8162 30 1 2.1805 -5.8160 -0.0740 31 1 -0.5804 -6.5564 -0.5482 32 1 0.7691 -7.0956 -1.5759 33 1 -1.6484 -5.5019 -2.5410 34 1 -1.4225 -7.2542 -2.7571 35 1 -1.6362 -5.2003 -4.9687 36 1 -1.4109 -6.9526 -5.1852 37 1 -1.7423 -5.2135 -7.4038 38 1 -0.8923 -6.6892 -7.9705 39 1 -0.4592 -4.1297 -9.0463 40 1 0.7501 -5.4490 -9.0972 41 1 2.0709 -4.3170 -7.6029 42 1 0.8959 -2.9725 -7.6020 43 1 -0.9538 -4.0091 -2.1743 44 1 -0.9755 -4.0286 -0.3948 45 1 -0.3627 -1.7839 -1.2368 46 1 0.9999 -2.4892 -2.1405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543808694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = -95.510987 kcal Electronic energy + Delta-G solvation = -23339.293019 eV Core-core repulsion = 20035.598574 eV Total energy + Delta-G solvation = -3303.694444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.51517 -38.48595 -37.05558 -33.92751 -32.24236 -31.71076 -30.55782 -29.65583 -28.30479 -25.54674 -24.99940 -22.75004 -21.82271 -21.75537 -21.28845 -20.40470 -18.45218 -17.05293 -16.36418 -16.30277 -15.97176 -15.84925 -15.20254 -14.60020 -14.37341 -14.04726 -13.78818 -13.66819 -13.27077 -12.87061 -12.52667 -12.44448 -12.09397 -12.01185 -11.86780 -11.68074 -11.40575 -11.12884 -11.06291 -10.88080 -10.83827 -10.71320 -10.61980 -10.29673 -10.06749 -9.83058 -9.61059 -9.40887 -9.25271 -8.81838 -8.55245 -8.17433 -7.52150 -5.86409 -3.91040 3.40340 3.43978 3.47583 3.65812 3.84043 4.39185 4.53301 4.56428 4.67813 4.76874 5.02300 5.06656 5.17286 5.31849 5.39026 5.41082 5.43179 5.43940 5.50701 5.51204 5.64376 5.74137 5.78043 5.84886 5.91918 5.94147 6.03654 6.07672 6.26808 6.34494 6.46554 6.76969 6.79422 6.94018 7.00331 7.22566 7.33685 7.40348 7.61094 7.77910 7.87328 7.98508 8.20524 8.29894 8.61211 9.12261 9.72457 11.19823 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.004409 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.371655 B = 6348.764785 C = 7671.289767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.524 5.524 13 C 0.057 3.943 14 C 0.062 3.938 15 O -0.357 6.357 16 C 0.067 3.933 17 C 0.081 3.919 18 H 0.075 0.925 19 C -0.149 4.149 20 C -0.155 4.155 21 C 0.043 3.957 22 O -0.354 6.354 23 C 0.056 3.944 24 C -0.101 4.101 25 H 0.258 0.742 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.089 0.911 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -14.461 -13.332 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.249 5.249 13 C -0.071 4.071 14 C -0.015 4.015 15 O -0.276 6.276 16 C -0.010 4.010 17 C 0.023 3.977 18 H 0.093 0.907 19 C -0.186 4.186 20 C -0.193 4.193 21 C -0.034 4.034 22 O -0.272 6.272 23 C -0.071 4.071 24 C -0.140 4.140 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.108 0.892 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.596 -14.098 -13.528 19.867 hybrid contribution -0.437 0.608 0.414 0.855 sum -4.032 -13.490 -13.115 19.242 Atomic orbital electron populations 1.69879 1.05851 1.26230 1.51296 1.24957 0.94817 0.98904 0.95309 0.86708 0.79625 0.83409 0.78526 1.20315 1.21440 1.20438 1.21194 0.92835 0.90758 1.49870 0.92858 1.18678 0.92709 0.91685 0.93954 1.21663 0.98724 0.93790 1.00171 1.22109 0.95803 0.99286 0.89480 1.61971 1.23534 1.01471 1.37911 1.22076 0.96962 0.93735 0.94373 1.22638 0.94149 0.98776 0.85889 1.88104 1.33039 1.93033 1.13383 1.22452 0.93669 0.99755 0.85146 1.23135 0.94697 0.86906 0.92988 0.90712 1.23155 0.99652 1.00822 0.95012 1.22930 0.98485 0.99193 0.98667 1.23157 0.97661 1.00078 0.82537 1.89111 1.79996 1.31465 1.26653 1.22320 0.93259 0.93321 0.98171 1.21613 1.00103 0.92872 0.99372 0.93181 0.96350 0.93380 0.92416 0.96115 0.92580 0.94337 0.90670 0.92806 0.93818 0.92716 0.92623 0.90269 0.90105 0.90474 0.90760 0.92432 0.89796 0.92344 0.96568 0.89249 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 11.37 55.43 0.63 -25.69 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.61 8.57 -34.44 -0.29 -14.90 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.05 1.27 2.16 -91.65 -0.20 1.07 16 10 C -0.11 -2.38 5.32 -26.65 -0.14 -2.52 16 11 C 0.06 1.19 5.46 -3.83 -0.02 1.16 16 12 N -0.52 -10.27 4.67 -234.68 -1.10 -11.37 16 13 C 0.06 0.89 5.52 -3.83 -0.02 0.87 16 14 C 0.06 0.89 5.56 37.16 0.21 1.09 16 15 O -0.36 -5.78 10.24 -36.17 -0.37 -6.15 16 16 C 0.07 0.84 5.69 37.16 0.21 1.05 16 17 C 0.08 0.98 3.63 -25.55 -0.09 0.89 16 18 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 19 C -0.15 -1.29 6.61 -24.60 -0.16 -1.46 16 20 C -0.15 -1.30 7.00 -25.21 -0.18 -1.48 16 21 C 0.04 0.49 7.70 37.73 0.29 0.78 16 22 O -0.35 -5.58 11.22 -36.17 -0.41 -5.98 16 23 C 0.06 1.20 5.04 -3.84 -0.02 1.18 16 24 C -0.10 -2.58 5.12 -26.65 -0.14 -2.71 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.79 6.05 -51.93 -0.31 0.48 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.18 5.79 -51.93 -0.30 0.88 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 2.49 6.17 -51.93 -0.32 2.17 16 46 H 0.04 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -32.10 355.71 -10.06 -42.16 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.50 Total: -2.02 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.65 Total: -13.33 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.47 Total: -37.06 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.78 Total: -12.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.10 -10.06 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.351 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds