Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99865 * 2 1 4 4 H 1.09000 * 109.47259 * 329.14633 * 3 2 1 5 5 C 1.52999 * 109.46828 * 209.14417 * 3 2 1 6 6 C 1.53009 * 109.47153 * 63.14574 * 5 3 2 7 7 C 1.52994 * 109.46853 * 65.88118 * 6 5 3 8 8 C 1.53004 * 109.47200 * 185.87710 * 6 5 3 9 9 C 1.50692 * 109.47296 * 89.14903 * 3 2 1 10 10 O 1.21286 * 120.00063 * 4.99426 * 9 3 2 11 11 N 1.34775 * 120.00407 * 185.00001 * 9 3 2 12 12 C 1.46924 * 120.62855 * 359.71490 * 11 9 3 13 13 C 1.53625 * 108.54438 * 126.36887 * 12 11 9 14 14 C 1.53039 * 109.23799 * 54.85706 * 13 12 11 15 15 C 1.50703 * 109.44830 * 178.49852 * 14 13 12 16 16 H 1.07998 * 120.00180 * 120.06043 * 15 14 13 17 17 C 1.37884 * 119.99663 * 300.06148 * 15 14 13 18 18 N 1.31505 * 120.00141 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47025 * 90.00115 * 19 17 15 21 21 H 1.48499 * 109.47092 * 210.00116 * 19 17 15 22 22 H 1.48501 * 109.47232 * 330.00090 * 19 17 15 23 23 C 1.53035 * 109.54023 * 298.50924 * 14 13 12 24 24 C 1.46930 * 120.63086 * 179.97438 * 11 9 3 25 25 H 1.09000 * 109.46776 * 295.60629 * 1 2 3 26 26 H 1.09000 * 109.47088 * 55.60859 * 1 2 3 27 27 H 1.08999 * 109.46838 * 175.61062 * 1 2 3 28 28 H 1.09001 * 109.47470 * 303.14668 * 5 3 2 29 29 H 1.09000 * 109.47038 * 183.14002 * 5 3 2 30 30 H 1.08994 * 109.46831 * 305.87732 * 6 5 3 31 31 H 1.09008 * 109.47064 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47098 * 299.99882 * 7 6 5 33 33 H 1.08994 * 109.47717 * 60.00156 * 7 6 5 34 34 H 1.08995 * 109.47259 * 300.00555 * 8 6 5 35 35 H 1.09010 * 109.46746 * 60.00115 * 8 6 5 36 36 H 1.08997 * 109.46850 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.58699 * 246.20342 * 12 11 9 38 38 H 1.08997 * 109.58848 * 6.62859 * 12 11 9 39 39 H 1.08998 * 109.63685 * 294.86968 * 13 12 11 40 40 H 1.08997 * 109.43562 * 174.72535 * 13 12 11 41 41 H 1.09006 * 109.46049 * 58.53496 * 14 13 12 42 42 H 0.97008 * 120.00034 * 179.97438 * 18 17 15 43 43 H 1.08992 * 109.50136 * 301.41445 * 23 14 13 44 44 H 1.08999 * 109.49951 * 181.31921 * 23 14 13 45 45 H 1.08994 * 109.58745 * 353.36669 * 24 11 9 46 46 H 1.08998 * 109.58387 * 113.65717 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3521 1.9962 -0.5270 5 6 3.3686 1.2589 -0.7025 6 6 3.1723 0.8598 -2.1665 7 6 2.3985 1.9601 -2.8956 8 6 4.5374 0.6705 -2.8311 9 6 2.1953 1.7730 1.4206 10 8 1.9473 1.0248 2.3424 11 7 2.6362 3.0225 1.6668 12 6 2.9466 3.9383 0.5607 13 6 2.1636 5.2430 0.7722 14 6 2.4829 5.8034 2.1601 15 6 1.7456 7.1027 2.3584 16 1 1.0361 7.2032 3.1664 17 6 1.9770 8.1632 1.5081 18 7 2.8412 8.0410 0.5245 19 14 1.0626 9.7736 1.7535 20 1 1.8431 10.6527 2.6609 21 1 0.8865 10.4476 0.4420 22 1 -0.2685 9.5008 2.3525 23 6 2.0452 4.8005 3.2300 24 6 2.8210 3.4928 3.0465 25 1 -0.3633 0.4442 0.9268 26 1 -0.3633 0.5805 -0.8480 27 1 -0.3633 -1.0247 -0.0787 28 1 4.0080 0.5269 -0.2091 29 1 3.8368 2.2420 -0.6536 30 1 2.6112 -0.0733 -2.2166 31 1 2.2582 1.6756 -3.9385 32 1 1.4259 2.0950 -2.4222 33 1 2.9595 2.8932 -2.8455 34 1 5.0985 1.6036 -2.7809 35 1 5.0887 -0.1134 -2.3116 36 1 4.3974 0.3858 -3.8739 37 1 4.0161 4.1485 0.5495 38 1 2.6518 3.4828 -0.3846 39 1 1.0944 5.0448 0.6970 40 1 2.4541 5.9677 0.0117 41 1 3.5556 5.9782 2.2432 42 1 3.0037 8.7871 -0.0739 43 1 0.9772 4.6065 3.1317 44 1 2.2514 5.2103 4.2188 45 1 2.4432 2.7433 3.7418 46 1 3.8807 3.6650 3.2350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569575128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = -103.143440 kcal Electronic energy + Delta-G solvation = -24127.845986 eV Core-core repulsion = 20823.820574 eV Total energy + Delta-G solvation = -3304.025412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21645 -37.89898 -36.66809 -35.82131 -33.54742 -31.67199 -30.34171 -29.60579 -27.25095 -26.44226 -26.20757 -24.43238 -22.70331 -22.25656 -20.02115 -19.92842 -18.47299 -17.31835 -16.55369 -16.21381 -15.88505 -15.18005 -14.67082 -14.55237 -14.37413 -14.22418 -13.89889 -13.32581 -13.19803 -12.87541 -12.79451 -12.53920 -12.39631 -12.30315 -12.08682 -11.73456 -11.58552 -11.36886 -11.30261 -10.98941 -10.92595 -10.67676 -10.57502 -10.54824 -10.40173 -10.36979 -10.11014 -9.67330 -9.20763 -9.07634 -8.83331 -8.41700 -8.02185 -6.07207 -4.13191 2.91947 3.25415 3.31216 3.32716 3.36179 3.86596 4.37604 4.59813 4.80530 4.86077 4.97802 5.07376 5.22067 5.25364 5.39532 5.48047 5.53685 5.57058 5.63203 5.67473 5.72147 5.76694 5.82787 5.88979 5.90802 5.97011 6.02570 6.10002 6.13147 6.22338 6.26091 6.38603 6.41855 6.61933 6.84700 6.97610 7.05675 7.12464 7.24117 7.62107 7.87229 7.89512 7.99384 8.36079 8.55144 8.90149 9.52116 10.98297 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.004797 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.145140 B = 5835.087134 C = 6556.549875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.075 3.925 4 H 0.087 0.913 5 C -0.116 4.116 6 C -0.093 4.093 7 C -0.154 4.154 8 C -0.146 4.146 9 C 0.487 3.513 10 O -0.546 6.546 11 N -0.597 5.597 12 C 0.096 3.904 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.105 0.895 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 -12.068 -6.834 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.014 3.986 4 H 0.105 0.895 5 C -0.153 4.153 6 C -0.112 4.112 7 C -0.211 4.211 8 C -0.204 4.204 9 C 0.274 3.726 10 O -0.424 6.424 11 N -0.332 5.332 12 C -0.026 4.026 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.470 -12.531 -6.499 14.124 hybrid contribution -0.730 1.304 0.116 1.499 sum -0.260 -11.227 -6.383 12.917 Atomic orbital electron populations 1.22828 0.80995 1.02640 1.00220 1.87927 1.19755 1.25385 1.94458 1.22098 0.97352 0.86347 0.92784 0.89514 1.21922 0.94347 1.03775 0.95275 1.21064 0.96956 0.99608 0.93543 1.21953 1.00204 0.98851 1.00077 1.21828 0.96553 1.01805 1.00185 1.21281 0.77591 0.81757 0.91979 1.90640 1.51440 1.54272 1.46061 1.48284 1.64350 1.12166 1.08354 1.22333 1.00477 0.92006 0.87786 1.22111 0.97269 0.93396 1.03448 1.18634 0.96869 0.92022 0.89472 1.21207 1.23841 0.96542 1.13441 0.92714 1.24948 0.95148 0.98594 0.95199 1.69826 1.34559 1.31534 1.17165 0.86624 0.80272 0.83828 0.77462 1.20687 1.21238 1.19992 1.21995 0.99035 0.94200 1.00860 1.21688 0.99998 0.97245 0.82187 0.93669 0.94093 0.89547 0.90639 0.89034 0.90395 0.92614 0.92817 0.92073 0.92492 0.92736 0.92729 0.91686 0.91073 0.94292 0.87690 0.95407 0.92960 0.93045 0.92122 0.90442 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.86 101.05 1.10 1.46 16 2 O -0.36 -5.37 9.25 -55.09 -0.51 -5.88 16 3 C 0.08 1.10 1.54 -27.89 -0.04 1.06 16 4 H 0.09 1.18 5.35 -51.93 -0.28 0.90 16 5 C -0.12 -1.44 3.95 -26.73 -0.11 -1.55 16 6 C -0.09 -0.98 2.86 -90.62 -0.26 -1.24 16 7 C -0.15 -1.54 8.97 37.15 0.33 -1.20 16 8 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 9 C 0.49 8.80 7.06 -10.99 -0.08 8.72 16 10 O -0.55 -11.60 15.92 -14.31 -0.23 -11.83 16 11 N -0.60 -10.72 2.97 -172.53 -0.51 -11.23 16 12 C 0.10 1.65 4.95 -3.49 -0.02 1.63 16 13 C -0.12 -2.64 5.17 -26.39 -0.14 -2.77 16 14 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 15 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -23.90 11.31 55.43 0.63 -23.27 16 19 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.12 -2.50 5.30 -26.63 -0.14 -2.64 16 24 C 0.11 2.05 6.43 -3.73 -0.02 2.02 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.43 7.98 -51.93 -0.41 0.01 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.13 5.40 -51.93 -0.28 0.84 16 30 H 0.08 0.86 7.61 -51.93 -0.40 0.46 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.05 0.55 6.53 -51.93 -0.34 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.04 4.70 -51.93 -0.24 0.80 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.11 2.48 6.03 -51.93 -0.31 2.17 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -29.27 353.14 -8.02 -37.29 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.09 Total: 0.82 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 0.39 Total: -6.75 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.11 Total: -34.50 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.74 Total: -17.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.27 -8.02 -37.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569575128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.851 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds