Wall clock time and date at job start Tue Mar 31 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48510 * 109.46804 * 270.00403 * 3 2 1 5 5 H 1.48500 * 109.47048 * 30.00049 * 3 2 1 6 6 H 1.48493 * 109.47416 * 150.00269 * 3 2 1 7 7 C 1.37884 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99916 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99636 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47155 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47065 * 64.99323 * 12 11 10 14 14 C 1.47846 * 110.99928 * 66.94165 * 13 12 11 15 15 C 1.54910 * 104.79752 * 146.35907 * 14 13 12 16 16 C 1.55142 * 101.65305 * 322.93201 * 15 14 13 17 17 C 1.47442 * 110.99917 * 187.78197 * 13 12 11 18 18 H 1.08997 * 109.88978 * 117.17302 * 17 13 12 19 19 C 1.53002 * 109.89026 * 356.14967 * 17 13 12 20 20 H 1.09008 * 109.57263 * 42.12728 * 19 17 13 21 21 C 1.53181 * 109.52422 * 162.27933 * 19 17 13 22 22 C 1.53174 * 109.03416 * 176.88797 * 21 19 17 23 23 C 1.53089 * 109.16756 * 303.02042 * 22 21 19 24 24 O 1.42905 * 109.41296 * 57.60770 * 23 22 21 25 25 C 1.42901 * 114.10077 * 298.84615 * 24 23 22 26 26 H 0.96991 * 120.00499 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46921 * 60.00124 * 9 7 2 28 28 H 1.09000 * 109.47316 * 299.99962 * 9 7 2 29 29 H 1.09000 * 109.47387 * 59.99897 * 11 10 9 30 30 H 1.09007 * 109.47116 * 299.99600 * 11 10 9 31 31 H 1.09003 * 109.46478 * 304.99821 * 12 11 10 32 32 H 1.08996 * 109.47576 * 184.99977 * 12 11 10 33 33 H 1.08997 * 110.37495 * 265.19425 * 14 13 12 34 34 H 1.09005 * 110.37154 * 27.53550 * 14 13 12 35 35 H 1.09001 * 110.98420 * 81.02101 * 15 14 13 36 36 H 1.08995 * 110.99034 * 204.83997 * 15 14 13 37 37 H 1.08998 * 110.70650 * 277.26880 * 16 15 14 38 38 H 1.08997 * 110.70544 * 154.03368 * 16 15 14 39 39 H 1.08996 * 109.53965 * 57.02622 * 21 19 17 40 40 H 1.08997 * 109.61852 * 296.79811 * 21 19 17 41 41 H 1.09003 * 109.52425 * 183.11808 * 22 21 19 42 42 H 1.08995 * 109.52364 * 62.93183 * 22 21 19 43 43 H 1.09000 * 109.48478 * 297.63234 * 23 22 21 44 44 H 1.08996 * 109.48618 * 177.59408 * 23 22 21 45 45 H 1.09001 * 109.48089 * 181.13517 * 25 24 23 46 46 H 1.09000 * 109.47888 * 301.16991 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0024 12 6 2.6482 -5.9562 -0.0030 13 7 3.4084 -5.8884 1.2521 14 6 2.5626 -6.2650 2.4048 15 6 3.5266 -6.9752 3.3876 16 6 4.4528 -7.7497 2.4134 17 6 4.5755 -6.7885 1.2123 18 1 5.4945 -6.2078 1.2913 19 6 4.5741 -7.5851 -0.0940 20 1 4.3039 -6.9290 -0.9215 21 6 5.9687 -8.1696 -0.3386 22 6 5.9352 -9.0281 -1.6067 23 6 4.8689 -10.1154 -1.4496 24 8 3.6023 -9.5051 -1.1938 25 6 3.5604 -8.7280 0.0048 26 1 -0.4850 0.8399 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8897 29 1 0.9447 -4.9818 -0.8922 30 1 0.9455 -4.9831 0.8878 31 1 3.3216 -5.7951 -0.8449 32 1 2.1822 -6.9374 -0.0931 33 1 2.1351 -5.3759 2.8683 34 1 1.7726 -6.9465 2.0892 35 1 4.0933 -6.2497 3.9713 36 1 2.9848 -7.6606 4.0392 37 1 3.9924 -8.6897 2.1092 38 1 5.4281 -7.9260 2.8670 39 1 6.2598 -8.7863 0.5116 40 1 6.6877 -7.3602 -0.4652 41 1 6.9095 -9.4928 -1.7580 42 1 5.6925 -8.4013 -2.4647 43 1 5.1335 -10.7663 -0.6163 44 1 4.8110 -10.7029 -2.3658 45 1 2.5598 -8.3161 0.1361 46 1 3.8079 -9.3608 0.8571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569719648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:37 Heat of formation + Delta-G solvation = -76.292549 kcal Electronic energy + Delta-G solvation = -23648.663325 eV Core-core repulsion = 20345.802254 eV Total energy + Delta-G solvation = -3302.861070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77887 -38.35543 -36.44949 -33.98043 -32.96440 -32.25844 -31.78246 -28.32745 -27.58410 -26.51095 -25.37821 -23.71350 -22.65866 -22.18167 -21.36043 -20.21754 -18.93012 -16.76624 -16.36528 -16.23887 -16.08624 -15.58001 -15.41429 -15.07519 -14.56188 -14.45499 -14.25791 -14.09867 -13.61979 -13.02512 -12.90019 -12.60295 -12.54367 -12.28099 -12.05622 -11.57060 -11.50937 -11.41498 -11.20031 -11.06842 -10.89592 -10.76172 -10.75736 -10.68128 -10.52560 -10.37171 -10.05892 -9.88069 -9.52777 -9.00943 -8.71808 -8.05853 -7.94581 -6.03887 -4.04519 3.34968 3.39562 3.45826 3.65180 4.04303 4.40119 4.43468 4.51550 4.61567 4.67814 4.69968 4.81202 4.89957 4.94085 4.98207 5.17197 5.23205 5.32533 5.34618 5.39643 5.46120 5.48468 5.59369 5.65779 5.72238 5.74386 5.75545 5.81148 5.89070 5.90095 6.04779 6.06511 6.13648 6.18069 6.23408 6.29039 6.42166 6.98028 7.18860 7.23389 7.32124 7.52347 7.88234 8.25185 8.71099 9.10778 9.60098 11.07900 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.003592 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.123601 B = 7792.212250 C = 8109.700607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.066 3.934 12 C 0.042 3.958 13 N -0.506 5.506 14 C 0.041 3.959 15 C -0.128 4.128 16 C -0.153 4.153 17 C 0.081 3.919 18 H 0.088 0.912 19 C -0.151 4.151 20 H 0.101 0.899 21 C -0.113 4.113 22 C -0.156 4.156 23 C 0.060 3.940 24 O -0.382 6.382 25 C 0.050 3.950 26 H 0.263 0.737 27 H 0.001 0.999 28 H 0.002 0.998 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -21.943 2.153 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.012 4.012 12 C -0.085 4.085 13 N -0.230 5.230 14 C -0.086 4.086 15 C -0.166 4.166 16 C -0.191 4.191 17 C -0.027 4.027 18 H 0.106 0.894 19 C -0.170 4.170 20 H 0.119 0.881 21 C -0.151 4.151 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.300 6.300 25 C -0.025 4.025 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.722 -21.275 2.085 23.484 hybrid contribution -0.013 0.154 0.048 0.161 sum 9.709 -21.121 2.132 23.344 Atomic orbital electron populations 1.69963 1.06099 1.27005 1.50984 1.24947 0.94948 0.99377 0.95320 0.86354 0.79711 0.82365 0.78167 1.20535 1.21164 1.19615 1.21073 0.94081 0.89383 1.50200 0.91546 1.20165 0.88872 0.83973 0.95034 1.87947 1.34601 1.12337 1.95005 1.22264 0.93922 0.86321 0.98684 1.22756 0.96166 0.96425 0.93121 1.63661 1.07125 1.49561 1.02626 1.23110 0.94885 0.99164 0.91478 1.22684 0.97558 0.98991 0.97412 1.23195 1.00574 0.99040 0.96282 1.22455 0.96165 0.91577 0.92514 0.89425 1.22573 0.96119 0.98038 1.00289 0.88147 1.21588 0.96686 0.99484 0.97368 1.22195 0.99479 0.98597 0.99155 1.22565 0.83959 0.94242 1.00941 1.87957 1.32082 1.66736 1.43259 1.23350 1.00205 0.92076 0.86906 0.92777 0.98090 0.97982 0.94460 0.94812 0.89525 0.93178 0.89799 0.94084 0.90589 0.91160 0.90415 0.91071 0.91966 0.91090 0.91008 0.90876 0.93509 0.89103 0.88275 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.46 9.43 -34.44 -0.32 -15.79 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.52 5.69 36.00 0.20 5.72 16 10 O -0.38 -9.55 10.27 -35.23 -0.36 -9.91 16 11 C 0.07 1.29 6.05 37.16 0.22 1.51 16 12 C 0.04 0.66 3.93 -3.82 -0.02 0.65 16 13 N -0.51 -7.66 5.13 -223.34 -1.15 -8.80 16 14 C 0.04 0.55 5.61 -2.30 -0.01 0.54 16 15 C -0.13 -1.36 7.08 -24.59 -0.17 -1.54 16 16 C -0.15 -1.48 5.97 -24.91 -0.15 -1.63 16 17 C 0.08 0.97 3.22 -66.72 -0.21 0.76 16 18 H 0.09 1.12 8.02 -51.93 -0.42 0.71 16 19 C -0.15 -1.64 1.68 -90.48 -0.15 -1.79 16 20 H 0.10 1.29 5.26 -51.92 -0.27 1.01 16 21 C -0.11 -1.02 5.19 -26.55 -0.14 -1.16 16 22 C -0.16 -1.30 6.14 -26.59 -0.16 -1.46 16 23 C 0.06 0.52 6.84 37.20 0.25 0.77 16 24 O -0.38 -4.42 10.77 -35.23 -0.38 -4.80 16 25 C 0.05 0.53 5.12 37.20 0.19 0.72 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.64 7.24 -51.92 -0.38 0.26 16 31 H 0.09 1.39 5.95 -51.93 -0.31 1.09 16 32 H 0.05 0.67 4.48 -51.93 -0.23 0.44 16 33 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 34 H 0.04 0.51 7.66 -51.93 -0.40 0.11 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.69 4.65 -51.93 -0.24 0.45 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.51 7.93 -51.93 -0.41 0.09 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.10 1.12 5.21 -51.93 -0.27 0.84 16 46 H 0.06 0.55 5.52 -51.93 -0.29 0.26 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -32.66 343.43 -9.39 -42.05 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.83 Total: -3.05 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.57 Total: -11.17 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.41 Total: -35.64 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.74 Total: -14.71 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.66 -9.39 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569719648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.242 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds