Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99359 * 2 1 4 4 H 1.48508 * 109.46616 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47090 * 299.99841 * 3 2 1 6 6 H 1.48501 * 109.47377 * 60.00425 * 3 2 1 7 7 C 1.37874 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99628 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00215 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47368 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47350 * 64.99775 * 12 11 10 14 14 C 1.47848 * 111.00023 * 57.36656 * 13 12 11 15 15 C 1.54908 * 104.79711 * 146.36169 * 14 13 12 16 16 C 1.55137 * 101.65207 * 322.93411 * 15 14 13 17 17 C 1.47445 * 111.00339 * 178.20674 * 13 12 11 18 18 H 1.09004 * 109.88704 * 117.17606 * 17 13 12 19 19 C 1.53002 * 109.88483 * 356.15498 * 17 13 12 20 20 H 1.08993 * 109.52076 * 321.37469 * 19 17 13 21 21 C 1.53183 * 109.56959 * 201.21944 * 19 17 13 22 22 C 1.53184 * 109.03400 * 183.08149 * 21 19 17 23 23 C 1.53091 * 109.16354 * 56.98098 * 22 21 19 24 24 O 1.42900 * 109.41373 * 302.39260 * 23 22 21 25 25 C 1.42900 * 114.10059 * 61.15700 * 24 23 22 26 26 H 0.97000 * 120.00416 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47469 * 60.00398 * 9 7 2 28 28 H 1.09004 * 109.47481 * 299.99864 * 9 7 2 29 29 H 1.08999 * 109.46974 * 60.00309 * 11 10 9 30 30 H 1.08997 * 109.47124 * 299.99820 * 11 10 9 31 31 H 1.09010 * 109.46845 * 305.00135 * 12 11 10 32 32 H 1.09001 * 109.47403 * 185.00054 * 12 11 10 33 33 H 1.08996 * 110.37338 * 265.19702 * 14 13 12 34 34 H 1.09002 * 110.36802 * 27.42308 * 14 13 12 35 35 H 1.08999 * 110.98906 * 81.02544 * 15 14 13 36 36 H 1.08998 * 110.99188 * 204.84106 * 15 14 13 37 37 H 1.09000 * 110.70517 * 277.26576 * 16 15 14 38 38 H 1.09005 * 110.70228 * 154.03645 * 16 15 14 39 39 H 1.08995 * 109.54723 * 302.94691 * 21 19 17 40 40 H 1.09003 * 109.54138 * 63.21583 * 21 19 17 41 41 H 1.09001 * 109.52075 * 297.07210 * 22 21 19 42 42 H 1.09004 * 109.57034 * 176.91844 * 22 21 19 43 43 H 1.08997 * 109.48056 * 182.40603 * 23 22 21 44 44 H 1.09001 * 109.48018 * 62.37314 * 23 22 21 45 45 H 1.09004 * 109.48484 * 178.85570 * 25 24 23 46 46 H 1.09006 * 109.48056 * 58.82746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5653 -4.8753 -0.0011 12 6 2.6483 -5.9561 -0.0004 13 7 3.4075 -5.8878 1.2553 14 6 2.5140 -6.0390 2.4235 15 6 3.3648 -6.7904 3.4777 16 6 4.1735 -7.7700 2.5871 17 6 4.4346 -6.9443 1.3100 18 1 5.4268 -6.4950 1.3525 19 6 4.3228 -7.8431 0.0770 20 1 3.2718 -7.9971 -0.1675 21 6 4.9846 -9.1942 0.3652 22 6 4.9341 -10.0554 -0.9007 23 6 5.6190 -9.3056 -2.0463 24 8 4.9745 -8.0452 -2.2414 25 6 5.0313 -7.1788 -1.1064 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 0.9456 -4.9821 -0.8914 30 1 0.9449 -4.9827 0.8886 31 1 3.3226 -5.7953 -0.8418 32 1 2.1825 -6.9374 -0.0904 33 1 2.2165 -5.0614 2.8027 34 1 1.6348 -6.6248 2.1554 35 1 4.0276 -6.1046 4.0053 36 1 2.7293 -7.3328 4.1777 37 1 3.5846 -8.6582 2.3581 38 1 5.1127 -8.0427 3.0686 39 1 6.0227 -9.0368 0.6579 40 1 4.4497 -9.6978 1.1704 41 1 3.8954 -10.2541 -1.1648 42 1 5.4512 -10.9982 -0.7217 43 1 5.5485 -9.8953 -2.9602 44 1 6.6679 -9.1429 -1.7985 45 1 4.5375 -6.2364 -1.3433 46 1 6.0726 -6.9883 -0.8463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569719651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = -82.583557 kcal Electronic energy + Delta-G solvation = -23605.023811 eV Core-core repulsion = 20301.889942 eV Total energy + Delta-G solvation = -3303.133869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58413 -38.41352 -36.47636 -33.96090 -33.02519 -32.42276 -31.60455 -28.25870 -27.59734 -26.46907 -25.36803 -23.56218 -22.54908 -22.13426 -21.08589 -20.47445 -19.07816 -16.74309 -16.48708 -16.16847 -15.97559 -15.72081 -15.37069 -14.92000 -14.46864 -14.33798 -14.24081 -14.10221 -13.36146 -13.26465 -13.00109 -12.67255 -12.44462 -12.30005 -11.88022 -11.53585 -11.46273 -11.39038 -11.32841 -11.06408 -10.96170 -10.79827 -10.72792 -10.55967 -10.53649 -10.41142 -10.03038 -9.85000 -9.53422 -9.00493 -8.73467 -8.07343 -7.96546 -6.04579 -4.05224 3.33671 3.39890 3.47224 3.75399 4.03805 4.40328 4.47591 4.51252 4.61383 4.70327 4.73173 4.82054 4.92163 5.04754 5.08541 5.21699 5.28205 5.32012 5.39684 5.43188 5.47566 5.53385 5.57424 5.61222 5.62276 5.72141 5.75170 5.77906 5.89692 5.98304 6.02844 6.04343 6.13617 6.16511 6.24338 6.35775 6.48645 7.08483 7.17543 7.21985 7.31594 7.50864 7.87848 8.24020 8.69190 9.10187 9.59559 11.07192 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.003747 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.210837 B = 7471.432785 C = 8142.817535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.063 3.937 12 C 0.040 3.960 13 N -0.506 5.506 14 C 0.042 3.958 15 C -0.130 4.130 16 C -0.136 4.136 17 C 0.078 3.922 18 H 0.085 0.915 19 C -0.148 4.148 20 H 0.091 0.909 21 C -0.116 4.116 22 C -0.156 4.156 23 C 0.058 3.942 24 O -0.381 6.381 25 C 0.056 3.944 26 H 0.262 0.738 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.114 0.886 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -21.869 2.488 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.015 4.015 12 C -0.087 4.087 13 N -0.229 5.229 14 C -0.085 4.085 15 C -0.168 4.168 16 C -0.175 4.175 17 C -0.030 4.030 18 H 0.103 0.897 19 C -0.167 4.167 20 H 0.109 0.891 21 C -0.154 4.154 22 C -0.194 4.194 23 C -0.019 4.019 24 O -0.299 6.299 25 C -0.020 4.020 26 H 0.072 0.928 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.131 0.869 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.339 -21.155 2.320 23.241 hybrid contribution -0.345 -0.045 0.256 0.432 sum 8.995 -21.200 2.576 23.173 Atomic orbital electron populations 1.69978 1.06102 1.26902 1.51069 1.24949 0.94949 0.99400 0.95315 0.86303 0.80108 0.82698 0.77524 1.19442 1.20925 1.20923 1.21111 0.94139 0.89334 1.50078 0.91445 1.20176 0.88874 0.83974 0.95054 1.87949 1.34607 1.12300 1.95012 1.22321 0.93983 0.86362 0.98827 1.22795 0.96507 0.95898 0.93526 1.63767 1.13183 1.44109 1.01880 1.23076 0.94352 1.00573 0.90519 1.22711 0.98745 0.97938 0.97447 1.22908 1.00528 0.98193 0.95847 1.22476 0.97768 0.89960 0.92800 0.89703 1.22460 1.02073 0.95734 0.96458 0.89104 1.21702 1.01082 0.95135 0.97443 1.22202 1.02082 0.98977 0.96120 1.22556 0.95417 0.85320 0.98567 1.87980 1.77960 1.26743 1.37250 1.23157 0.99911 0.93587 0.85361 0.92832 0.98032 0.98015 0.94378 0.94733 0.88760 0.93762 0.89648 0.94071 0.90601 0.91196 0.91309 0.91059 0.91784 0.91154 0.91205 0.91117 0.89216 0.93407 0.86886 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.46 5.69 36.01 0.20 5.67 16 10 O -0.38 -9.44 10.27 -35.23 -0.36 -9.80 16 11 C 0.06 1.22 5.90 37.16 0.22 1.44 16 12 C 0.04 0.62 4.03 -3.83 -0.02 0.60 16 13 N -0.51 -7.64 5.20 -223.35 -1.16 -8.80 16 14 C 0.04 0.59 5.29 -2.30 -0.01 0.58 16 15 C -0.13 -1.43 7.08 -24.59 -0.17 -1.60 16 16 C -0.14 -1.33 5.36 -24.92 -0.13 -1.47 16 17 C 0.08 0.92 3.19 -66.73 -0.21 0.71 16 18 H 0.09 1.04 7.96 -51.93 -0.41 0.63 16 19 C -0.15 -1.58 1.55 -90.48 -0.14 -1.72 16 20 H 0.09 1.07 5.33 -51.93 -0.28 0.79 16 21 C -0.12 -0.98 4.62 -26.54 -0.12 -1.11 16 22 C -0.16 -1.25 6.14 -26.59 -0.16 -1.42 16 23 C 0.06 0.53 6.84 37.20 0.25 0.79 16 24 O -0.38 -4.77 10.76 -35.23 -0.38 -5.14 16 25 C 0.06 0.67 5.73 37.20 0.21 0.88 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.65 6.74 -51.93 -0.35 0.30 16 31 H 0.09 1.50 4.46 -51.92 -0.23 1.27 16 32 H 0.04 0.60 6.00 -51.93 -0.31 0.29 16 33 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 34 H 0.04 0.55 7.52 -51.93 -0.39 0.15 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.62 6.37 -51.93 -0.33 0.29 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 6.20 -51.93 -0.32 0.23 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.11 1.55 5.04 -51.93 -0.26 1.29 16 46 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -32.32 344.22 -9.43 -41.75 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.93 Total: -2.92 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.50 Total: -10.81 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.43 Total: -35.54 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.74 Total: -14.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.32 -9.43 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569719651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.836 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds