Wall clock time and date at job start Tue Mar 31 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47023 * 269.99951 * 3 2 1 5 5 H 1.48496 * 109.46872 * 30.00319 * 3 2 1 6 6 H 1.48502 * 109.47003 * 149.99777 * 3 2 1 7 7 C 1.37877 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00316 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99711 * 359.72485 * 7 2 1 10 10 O 1.42903 * 109.47252 * 180.27077 * 9 7 2 11 11 C 1.42899 * 114.00460 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47229 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.46946 * 65.00497 * 12 11 10 14 14 C 1.47843 * 111.00052 * 286.90818 * 13 12 11 15 15 C 1.54905 * 104.79983 * 213.63965 * 14 13 12 16 16 C 1.55144 * 101.65265 * 37.06449 * 15 14 13 17 17 C 1.47444 * 110.99990 * 166.06677 * 13 12 11 18 18 H 1.08998 * 109.88575 * 242.82449 * 17 13 12 19 19 C 1.52995 * 109.88731 * 3.84769 * 17 13 12 20 20 H 1.09001 * 109.52635 * 315.32610 * 19 17 13 21 21 C 1.53183 * 109.52248 * 75.45403 * 19 17 13 22 22 C 1.53176 * 109.03268 * 176.88457 * 21 19 17 23 23 C 1.53084 * 109.16552 * 303.01592 * 22 21 19 24 24 O 1.42911 * 109.41503 * 57.61426 * 23 22 21 25 25 C 1.42903 * 114.09312 * 298.84041 * 24 23 22 26 26 H 0.97007 * 120.00019 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47354 * 300.27224 * 9 7 2 28 28 H 1.09004 * 109.47294 * 60.27662 * 9 7 2 29 29 H 1.08999 * 109.47243 * 300.00918 * 11 10 9 30 30 H 1.09006 * 109.46703 * 60.00654 * 11 10 9 31 31 H 1.08994 * 109.46798 * 185.00274 * 12 11 10 32 32 H 1.08998 * 109.46962 * 304.99948 * 12 11 10 33 33 H 1.09005 * 110.37299 * 332.46739 * 14 13 12 34 34 H 1.09005 * 110.37999 * 94.80652 * 14 13 12 35 35 H 1.09003 * 110.99054 * 278.97706 * 15 14 13 36 36 H 1.08997 * 111.02594 * 155.17366 * 15 14 13 37 37 H 1.08993 * 110.70740 * 205.96723 * 16 15 14 38 38 H 1.09002 * 110.69982 * 82.73311 * 16 15 14 39 39 H 1.08996 * 109.54211 * 296.75021 * 21 19 17 40 40 H 1.08996 * 109.54207 * 57.01941 * 21 19 17 41 41 H 1.08998 * 109.52351 * 62.93119 * 22 21 19 42 42 H 1.09004 * 109.51769 * 183.05292 * 22 21 19 43 43 H 1.09003 * 109.48205 * 177.59193 * 23 22 21 44 44 H 1.09001 * 109.48710 * 297.61909 * 23 22 21 45 45 H 1.09000 * 109.48226 * 301.17452 * 25 24 23 46 46 H 1.08996 * 109.47515 * 181.13960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0074 10 8 2.1796 -3.5853 0.0130 11 6 1.5651 -4.8754 0.0203 12 6 2.6481 -5.9562 0.0265 13 7 3.4080 -5.8806 1.2813 14 6 4.2996 -4.7013 1.2906 15 6 5.5458 -5.1538 2.0919 16 6 5.6918 -6.6299 1.6370 17 6 4.2278 -7.0905 1.4762 18 1 3.9022 -7.6187 2.3724 19 6 4.1013 -8.0068 0.2575 20 1 3.0545 -8.0775 -0.0380 21 6 4.9228 -7.4335 -0.9014 22 6 4.8516 -8.3980 -2.0892 23 6 5.3520 -9.7760 -1.6484 24 8 4.5651 -10.2375 -0.5483 25 6 4.6307 -9.3999 0.6077 26 1 -0.4850 0.8401 0.0004 27 1 0.6244 -2.5522 0.8977 28 1 0.6243 -2.5615 -0.8823 29 1 0.9452 -4.9775 0.9110 30 1 0.9446 -4.9873 -0.8689 31 1 2.1820 -6.9379 -0.0575 32 1 3.3216 -5.8004 -0.8162 33 1 4.5807 -4.4301 0.2730 34 1 3.8133 -3.8617 1.7874 35 1 5.3637 -5.0920 3.1648 36 1 6.4232 -4.5705 1.8126 37 1 6.1999 -7.2197 2.3999 38 1 6.2213 -6.6894 0.6861 39 1 4.5157 -6.4653 -1.1929 40 1 5.9604 -7.3153 -0.5893 41 1 3.8202 -8.4776 -2.4326 42 1 5.4775 -8.0244 -2.8997 43 1 5.2635 -10.4774 -2.4781 44 1 6.3960 -9.7033 -1.3436 45 1 5.6652 -9.3223 0.9422 46 1 4.0225 -9.8304 1.4033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569719652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:43 Heat of formation + Delta-G solvation = -77.006504 kcal Electronic energy + Delta-G solvation = -23845.487594 eV Core-core repulsion = 20542.595564 eV Total energy + Delta-G solvation = -3302.892030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71067 -38.36703 -36.49832 -33.74184 -32.97079 -32.14425 -31.90694 -28.24514 -27.47208 -26.59789 -25.39987 -23.46426 -22.50629 -21.93206 -21.76982 -20.10498 -18.86624 -16.63293 -16.41315 -16.20554 -15.95918 -15.64391 -15.50707 -14.93737 -14.53941 -14.40002 -14.37230 -13.85674 -13.57426 -13.25744 -12.95573 -12.53559 -12.38887 -12.32268 -11.76296 -11.59828 -11.38339 -11.16845 -11.11741 -10.95492 -10.84949 -10.82256 -10.71353 -10.64820 -10.42069 -10.32166 -10.02777 -9.87434 -9.61839 -9.06339 -8.77554 -8.11917 -7.90773 -6.09191 -4.10728 3.30247 3.35425 3.40296 3.66624 4.15936 4.35842 4.47809 4.51811 4.64886 4.76451 4.85146 4.92314 4.93839 5.06172 5.09797 5.21603 5.23424 5.27322 5.45687 5.46656 5.49624 5.58476 5.62092 5.66478 5.72748 5.84039 5.88267 5.91957 6.02867 6.08983 6.13484 6.15515 6.20731 6.33310 6.40035 6.51075 6.71296 6.98202 7.16205 7.34185 7.39321 7.48353 7.80703 8.18541 8.62726 9.03054 9.54114 11.02371 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.003673 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.282141 B = 7622.261240 C = 7924.273520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.392 6.392 11 C 0.064 3.936 12 C 0.039 3.961 13 N -0.516 5.516 14 C 0.059 3.941 15 C -0.134 4.134 16 C -0.151 4.151 17 C 0.078 3.922 18 H 0.083 0.917 19 C -0.147 4.147 20 H 0.096 0.904 21 C -0.139 4.139 22 C -0.156 4.156 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.069 3.931 26 H 0.263 0.737 27 H 0.004 0.996 28 H 0.001 0.999 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -18.646 -0.054 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.312 6.312 11 C -0.014 4.014 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.068 4.068 15 C -0.172 4.172 16 C -0.189 4.189 17 C -0.030 4.030 18 H 0.100 0.900 19 C -0.166 4.166 20 H 0.114 0.886 21 C -0.175 4.175 22 C -0.193 4.193 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.008 4.008 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.926 -18.607 0.343 21.581 hybrid contribution 0.664 1.115 -0.693 1.471 sum 11.589 -17.492 -0.351 20.986 Atomic orbital electron populations 1.69965 1.06102 1.27070 1.50636 1.24942 0.94939 0.99370 0.95245 0.86371 0.79691 0.82463 0.78163 1.20549 1.21103 1.19653 1.21039 0.93909 0.89422 1.50646 0.91700 1.20148 0.88807 0.83674 0.95203 1.87847 1.35274 1.12943 1.95153 1.22299 0.94474 0.85524 0.99068 1.22829 0.96587 0.98102 0.91330 1.63723 1.24633 1.01518 1.34104 1.23020 0.90809 0.93435 0.99533 1.22763 0.98557 0.95144 1.00709 1.23168 0.96716 0.97077 1.01893 1.22393 0.92342 0.91502 0.96775 0.89951 1.22555 1.02007 0.95694 0.96388 0.88584 1.22284 1.00854 0.99794 0.94578 1.22188 1.02697 0.95904 0.98557 1.22562 0.94018 0.95543 0.89459 1.87926 1.69852 1.49307 1.23174 1.22596 1.00412 0.89981 0.87798 0.92705 0.97783 0.98069 0.93848 0.94556 0.89752 0.92856 0.93136 0.88931 0.91124 0.91264 0.91504 0.90294 0.89786 0.90913 0.91025 0.90951 0.89160 0.93455 0.93282 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -14.99 9.43 -34.44 -0.32 -15.31 16 8 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 9 C 0.20 5.39 5.69 36.00 0.20 5.59 16 10 O -0.39 -9.25 8.00 -35.23 -0.28 -9.53 16 11 C 0.06 1.22 6.26 37.16 0.23 1.45 16 12 C 0.04 0.59 4.14 -3.82 -0.02 0.57 16 13 N -0.52 -7.72 5.13 -223.36 -1.15 -8.87 16 14 C 0.06 0.95 5.15 -2.30 -0.01 0.94 16 15 C -0.13 -1.68 7.08 -24.59 -0.17 -1.85 16 16 C -0.15 -1.60 5.86 -24.91 -0.15 -1.74 16 17 C 0.08 0.91 3.19 -66.73 -0.21 0.70 16 18 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 19 C -0.15 -1.54 1.68 -90.48 -0.15 -1.69 16 20 H 0.10 1.11 5.28 -51.93 -0.27 0.83 16 21 C -0.14 -1.42 4.45 -26.55 -0.12 -1.54 16 22 C -0.16 -1.42 6.14 -26.60 -0.16 -1.59 16 23 C 0.06 0.54 6.84 37.20 0.25 0.79 16 24 O -0.38 -4.20 10.77 -35.23 -0.38 -4.58 16 25 C 0.07 0.66 6.02 37.21 0.22 0.89 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.11 5.51 -51.93 -0.29 0.83 16 32 H 0.05 0.81 4.51 -51.93 -0.23 0.58 16 33 H 0.05 0.88 7.39 -51.93 -0.38 0.49 16 34 H 0.09 1.79 7.59 -51.93 -0.39 1.40 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.81 4.74 -51.93 -0.25 0.56 16 39 H 0.08 1.02 4.92 -51.93 -0.26 0.76 16 40 H 0.07 0.71 5.48 -51.93 -0.28 0.43 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.43 7.83 -51.93 -0.41 0.02 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -30.90 340.56 -9.26 -40.16 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.80 Total: -1.56 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.50 Total: -11.26 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.41 Total: -35.19 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.66 Total: -14.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.90 -9.26 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569719652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.846 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds