Wall clock time and date at job start Tue Mar 31 2020 05:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47091 * 89.99931 * 3 2 1 5 5 H 1.48504 * 109.47083 * 209.99807 * 3 2 1 6 6 H 1.48498 * 109.46868 * 329.99850 * 3 2 1 7 7 C 1.37881 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00201 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.42895 * 113.99951 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47018 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47005 * 64.99779 * 12 11 10 14 14 C 1.47447 * 111.00281 * 69.87775 * 13 12 11 15 15 C 1.54320 * 107.23627 * 123.25328 * 14 13 12 16 16 C 1.55140 * 103.01877 * 22.28756 * 15 14 13 17 17 C 1.47852 * 110.99979 * 190.71427 * 13 12 11 18 18 H 1.08997 * 110.37260 * 332.47181 * 17 13 12 19 19 C 1.52998 * 110.37125 * 94.80531 * 17 13 12 20 20 H 1.09007 * 109.52434 * 57.52393 * 19 17 13 21 21 C 1.53172 * 109.52545 * 297.40165 * 19 17 13 22 22 C 1.53179 * 109.03682 * 183.11520 * 21 19 17 23 23 C 1.53096 * 109.16593 * 56.97474 * 22 21 19 24 24 O 1.42900 * 109.41297 * 302.39526 * 23 22 21 25 25 C 1.42905 * 114.15662 * 61.12618 * 24 23 22 26 26 H 0.97007 * 119.99727 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46824 * 299.99893 * 9 7 2 28 28 H 1.09001 * 109.46817 * 59.99795 * 9 7 2 29 29 H 1.09002 * 109.46800 * 299.99470 * 11 10 9 30 30 H 1.08998 * 109.47709 * 59.99852 * 11 10 9 31 31 H 1.09002 * 109.47324 * 184.99883 * 12 11 10 32 32 H 1.08998 * 109.46861 * 304.99735 * 12 11 10 33 33 H 1.09005 * 109.88718 * 242.66320 * 14 13 12 34 34 H 1.09002 * 109.88322 * 3.84601 * 14 13 12 35 35 H 1.08999 * 110.70143 * 140.66663 * 15 14 13 36 36 H 1.08997 * 110.70604 * 263.90113 * 15 14 13 37 37 H 1.08997 * 110.99442 * 82.43615 * 16 15 14 38 38 H 1.08999 * 110.99169 * 206.21773 * 16 15 14 39 39 H 1.09000 * 109.54226 * 302.97295 * 21 19 17 40 40 H 1.08991 * 109.54907 * 63.24432 * 21 19 17 41 41 H 1.09001 * 109.52412 * 176.88249 * 22 21 19 42 42 H 1.08997 * 109.52304 * 297.00816 * 22 21 19 43 43 H 1.08997 * 109.47382 * 62.37523 * 23 22 21 44 44 H 1.08997 * 109.47814 * 182.39755 * 23 22 21 45 45 H 1.08997 * 109.53863 * 178.93074 * 25 24 23 46 46 H 1.08991 * 109.42908 * 58.88476 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6478 -5.9562 0.0006 13 7 3.4070 -5.8879 1.2564 14 6 2.5832 -6.3299 2.3966 15 6 3.3342 -7.4919 3.0801 16 6 4.8034 -7.2684 2.6348 17 6 4.6155 -6.7372 1.1918 18 1 4.4611 -7.5649 0.4997 19 6 5.8283 -5.9062 0.7679 20 1 5.9675 -5.0818 1.4674 21 6 5.6003 -5.3494 -0.6406 22 6 6.8516 -4.5853 -1.0844 23 6 8.0617 -5.5208 -1.0182 24 8 8.1983 -6.0273 0.3111 25 6 7.0782 -6.7903 0.7641 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 0.9445 -4.9827 0.8898 30 1 0.9450 -4.9822 -0.8902 31 1 2.1819 -6.9375 -0.0893 32 1 3.3219 -5.7956 -0.8407 33 1 2.4526 -5.5078 3.1004 34 1 1.6121 -6.6743 2.0410 35 1 3.2455 -7.4232 4.1643 36 1 2.9649 -8.4529 2.7223 37 1 5.2934 -6.5252 3.2638 38 1 5.3590 -8.2061 2.6369 39 1 5.4109 -6.1711 -1.3313 40 1 4.7448 -4.6742 -0.6318 41 1 6.7194 -4.2326 -2.1073 42 1 7.0119 -3.7336 -0.4233 43 1 7.9179 -6.3504 -1.7103 44 1 8.9618 -4.9706 -1.2921 45 1 7.2692 -7.1539 1.7738 46 1 6.9223 -7.6372 0.0960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569719654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:46 Heat of formation + Delta-G solvation = -103.133612 kcal Electronic energy + Delta-G solvation = -23701.945301 eV Core-core repulsion = 20397.920315 eV Total energy + Delta-G solvation = -3304.024986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.03898 -38.42716 -36.47578 -33.74151 -33.02394 -32.27104 -31.54579 -28.23656 -27.62266 -26.49311 -24.99672 -23.50133 -22.41095 -22.14359 -20.56759 -20.00726 -19.80487 -16.74680 -16.35852 -16.26732 -15.76336 -15.56427 -15.17395 -14.65792 -14.40324 -14.23646 -14.14154 -13.79125 -13.48850 -13.09982 -12.94967 -12.58944 -12.41273 -12.32388 -11.71053 -11.63131 -11.53945 -11.18316 -11.11583 -10.98266 -10.91721 -10.74196 -10.71827 -10.64848 -10.48479 -10.19757 -10.12190 -9.92064 -9.31072 -9.02869 -8.74162 -8.08296 -8.03209 -6.05796 -4.06404 3.33770 3.38543 3.44113 3.81919 4.03331 4.39461 4.55983 4.60307 4.86631 4.94013 4.97568 4.99469 5.06813 5.14246 5.24673 5.30871 5.32114 5.38471 5.44814 5.51653 5.52637 5.63051 5.66462 5.73120 5.76092 5.82759 5.89332 5.97991 5.98858 6.05062 6.11340 6.18197 6.26341 6.27161 6.34909 6.51960 6.61523 7.14845 7.16641 7.24888 7.32685 7.49974 7.86138 8.22879 8.68211 9.08526 9.58301 11.05942 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.004774 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.834411 B = 5864.210722 C = 7158.611295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.378 6.378 11 C 0.069 3.931 12 C 0.049 3.951 13 N -0.506 5.506 14 C 0.043 3.957 15 C -0.142 4.142 16 C -0.126 4.126 17 C 0.080 3.920 18 H 0.049 0.951 19 C -0.103 4.103 20 H 0.088 0.912 21 C -0.121 4.121 22 C -0.155 4.155 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.067 3.933 26 H 0.263 0.737 27 H 0.002 0.998 28 H 0.001 0.999 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 -17.470 1.469 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.212 1.212 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.298 6.298 11 C -0.010 4.010 12 C -0.079 4.079 13 N -0.230 5.230 14 C -0.085 4.085 15 C -0.180 4.180 16 C -0.164 4.164 17 C -0.028 4.028 18 H 0.067 0.933 19 C -0.122 4.122 20 H 0.107 0.893 21 C -0.159 4.159 22 C -0.193 4.193 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.010 4.010 26 H 0.072 0.928 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.905 -16.753 1.631 20.056 hybrid contribution -0.695 0.011 -0.344 0.776 sum 10.209 -16.743 1.287 19.652 Atomic orbital electron populations 1.69970 1.06099 1.26992 1.50976 1.24938 0.94935 0.99357 0.95314 0.86369 0.79684 0.82416 0.78221 1.20500 1.19639 1.21175 1.21055 0.94044 0.89338 1.50209 0.91560 1.20154 0.88857 0.83944 0.94995 1.87926 1.34570 1.12262 1.94999 1.22225 0.93790 0.86326 0.98630 1.22488 0.96437 0.95923 0.93029 1.63361 1.05320 1.51518 1.02794 1.22851 0.95445 0.96563 0.93616 1.22790 0.95670 0.98544 1.01022 1.22773 0.96646 1.00891 0.96071 1.22477 0.91177 0.93133 0.96036 0.93255 1.21697 0.93095 0.98858 0.98554 0.89328 1.21767 0.99099 1.00081 0.94912 1.22176 0.95304 0.99405 1.02410 1.22594 0.98813 0.96371 0.83824 1.87903 1.40350 1.70901 1.31145 1.22614 0.86080 0.92696 0.99630 0.92784 0.98017 0.98149 0.94763 0.94581 0.94584 0.89592 0.90260 0.92919 0.90866 0.91905 0.90291 0.91182 0.93063 0.88499 0.91010 0.90758 0.93672 0.89269 0.89141 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.43 5.69 36.01 0.20 5.64 16 10 O -0.38 -9.18 10.27 -35.23 -0.36 -9.54 16 11 C 0.07 1.29 6.05 37.16 0.22 1.51 16 12 C 0.05 0.74 4.40 -3.82 -0.02 0.72 16 13 N -0.51 -7.49 4.53 -223.37 -1.01 -8.50 16 14 C 0.04 0.57 6.13 -2.83 -0.02 0.55 16 15 C -0.14 -1.44 6.94 -24.91 -0.17 -1.62 16 16 C -0.13 -1.28 5.49 -24.59 -0.13 -1.41 16 17 C 0.08 0.96 2.10 -66.18 -0.14 0.82 16 18 H 0.05 0.56 7.81 -51.93 -0.41 0.16 16 19 C -0.10 -1.30 2.13 -90.48 -0.19 -1.49 16 20 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 21 C -0.12 -1.63 3.91 -26.55 -0.10 -1.74 16 22 C -0.16 -1.95 6.14 -26.59 -0.16 -2.12 16 23 C 0.06 0.67 6.85 37.21 0.25 0.93 16 24 O -0.38 -4.93 10.76 -35.23 -0.38 -5.31 16 25 C 0.07 0.74 5.89 37.21 0.22 0.96 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.47 7.96 -51.93 -0.41 0.05 16 32 H 0.09 1.30 5.29 -51.93 -0.27 1.03 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.68 6.94 -51.93 -0.36 0.31 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 40 H 0.10 1.63 6.38 -51.93 -0.33 1.30 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.88 7.38 -51.93 -0.38 0.49 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -31.85 353.05 -9.58 -41.43 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.40 Total: -2.78 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.46 Total: -11.22 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.28 Total: -35.09 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.74 Total: -14.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.85 -9.58 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569719654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.704 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds