Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47233 * 2 1 4 4 C 1.52999 * 109.46925 * 120.00077 * 2 1 3 5 5 C 1.53000 * 109.47217 * 295.05490 * 4 2 1 6 6 O 1.42901 * 109.46939 * 175.05455 * 4 2 1 7 7 C 1.50697 * 109.47294 * 55.05319 * 4 2 1 8 8 O 1.21285 * 120.00575 * 234.78474 * 7 4 2 9 9 N 1.34786 * 120.00129 * 54.78788 * 7 4 2 10 10 C 1.46924 * 120.62364 * 4.52028 * 9 7 4 11 11 C 1.53623 * 108.54075 * 126.37366 * 10 9 7 12 12 C 1.53036 * 109.24366 * 54.85254 * 11 10 9 13 13 C 1.53001 * 109.45000 * 178.49799 * 12 11 10 14 14 C 1.50706 * 109.47117 * 295.06027 * 13 12 11 15 15 H 1.08002 * 119.99756 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99834 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99786 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00204 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47155 * 89.99803 * 18 16 14 20 20 H 1.48502 * 109.46900 * 209.99550 * 18 16 14 21 21 H 1.48500 * 109.47057 * 329.99420 * 18 16 14 22 22 C 1.53035 * 109.53830 * 298.51080 * 12 11 10 23 23 C 1.46921 * 120.63347 * 184.80314 * 9 7 4 24 24 H 1.08998 * 109.46978 * 64.99322 * 1 2 3 25 25 H 1.08995 * 109.47552 * 185.00211 * 1 2 3 26 26 H 1.09007 * 109.46758 * 304.99817 * 1 2 3 27 27 H 1.08997 * 109.46928 * 239.99352 * 2 1 3 28 28 H 1.09006 * 109.46695 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46884 * 299.99556 * 3 2 1 30 30 H 1.08998 * 109.47205 * 60.00012 * 3 2 1 31 31 H 1.09002 * 109.47087 * 60.00051 * 5 4 2 32 32 H 1.09001 * 109.47173 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46996 * 299.99823 * 5 4 2 34 34 H 0.96693 * 114.00114 * 304.97204 * 6 4 2 35 35 H 1.09001 * 109.58541 * 246.20215 * 10 9 7 36 36 H 1.09003 * 109.59412 * 6.62914 * 10 9 7 37 37 H 1.08999 * 109.63251 * 294.85801 * 11 10 9 38 38 H 1.09003 * 109.43229 * 174.72349 * 11 10 9 39 39 H 1.08999 * 109.45925 * 58.53068 * 12 11 10 40 40 H 1.09004 * 109.47103 * 55.06033 * 13 12 11 41 41 H 1.08998 * 109.47341 * 175.05948 * 13 12 11 42 42 H 0.96996 * 120.00307 * 180.02562 * 17 16 14 43 43 H 1.09008 * 109.49906 * 301.41372 * 22 12 11 44 44 H 1.08998 * 109.52615 * 181.33564 * 22 12 11 45 45 H 1.08997 * 109.58389 * 353.36789 * 23 9 7 46 46 H 1.08995 * 109.58769 * 113.65394 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6340 0.0682 2.4954 6 8 3.4642 -0.8227 1.1926 7 6 1.4401 -2.1023 1.3120 8 8 0.8349 -2.4563 2.3017 9 7 1.5762 -2.9443 0.2683 10 6 2.3892 -2.5676 -0.8961 11 6 3.4231 -3.6754 -1.1489 12 6 2.7001 -5.0163 -1.2947 13 6 3.7223 -6.1174 -1.5839 14 6 4.3690 -5.8639 -2.9214 15 1 4.0800 -5.0032 -3.5063 16 6 5.3301 -6.7300 -3.3976 17 7 5.8947 -6.5085 -4.5645 18 14 5.8303 -8.2183 -2.3855 19 1 4.9676 -9.3728 -2.7432 20 1 7.2490 -8.5544 -2.6674 21 1 5.6720 -7.9106 -0.9414 22 6 1.9554 -5.3400 0.0025 23 6 0.9094 -4.2534 0.2708 24 1 -0.3633 0.4344 -0.9313 25 1 -0.3634 -1.0237 0.0896 26 1 -0.3633 0.5895 0.8419 27 1 1.8933 -0.5139 -0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.5476 0.1455 2.5386 32 1 1.9977 -0.4455 3.3854 33 1 2.0679 1.0670 2.4500 34 1 3.7968 -1.2451 0.3889 35 1 1.7469 -2.4572 -1.7698 36 1 2.9014 -1.6267 -0.6953 37 1 4.1180 -3.7260 -0.3107 38 1 3.9723 -3.4567 -2.0647 39 1 1.9876 -4.9571 -2.1174 40 1 4.4855 -6.1182 -0.8056 41 1 3.2197 -7.0845 -1.6008 42 1 6.5707 -7.1180 -4.8998 43 1 2.6642 -5.3749 0.8299 44 1 1.4601 -6.3062 -0.0932 45 1 0.4450 -4.4251 1.2418 46 1 0.1472 -4.2768 -0.5081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569727508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -93.116874 kcal Electronic energy + Delta-G solvation = -24308.004735 eV Core-core repulsion = 21004.414108 eV Total energy + Delta-G solvation = -3303.590628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11757 -38.06063 -37.30346 -34.62531 -34.12750 -32.19684 -30.96086 -29.87610 -28.70575 -27.44439 -25.53627 -24.30176 -22.99675 -21.86002 -20.32427 -20.01496 -19.03541 -17.54701 -16.81637 -16.63195 -16.23470 -15.29165 -15.04485 -14.36576 -14.28516 -13.89307 -13.60286 -13.44378 -13.29447 -13.18977 -12.99070 -12.76737 -12.46867 -12.35834 -12.33112 -12.13037 -11.82301 -11.66415 -11.49111 -11.35050 -11.28009 -10.99863 -10.94848 -10.71840 -10.50930 -10.33391 -9.86381 -9.77218 -9.54342 -9.33036 -9.11593 -8.57707 -8.50291 -6.08862 -4.06622 2.50775 2.97976 3.27750 3.36092 3.39661 4.00518 4.19155 4.39456 4.41813 4.57724 4.78811 4.92609 5.10137 5.16979 5.23885 5.25465 5.33064 5.34982 5.41423 5.47557 5.52325 5.59167 5.63192 5.69248 5.71906 5.81849 5.82696 5.90564 5.92811 6.05534 6.16954 6.20589 6.21088 6.34999 6.52139 6.71742 6.78210 6.86564 7.19399 7.31385 7.37497 7.42950 7.75016 8.12379 8.48062 8.94895 9.54481 11.04236 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.004309 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.092068 B = 6496.863301 C = 6893.097437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.145 4.145 4 C 0.125 3.875 5 C -0.126 4.126 6 O -0.546 6.546 7 C 0.497 3.503 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.089 3.911 11 C -0.124 4.124 12 C -0.071 4.071 13 C -0.010 4.010 14 C -0.517 4.517 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.132 4.132 23 C 0.111 3.889 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.379 0.621 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.263 0.737 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 13.618 8.885 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.202 4.202 4 C 0.081 3.919 5 C -0.183 4.183 6 O -0.356 6.356 7 C 0.284 3.716 8 O -0.417 6.417 9 N -0.336 5.336 10 C -0.033 4.033 11 C -0.162 4.162 12 C -0.089 4.089 13 C -0.047 4.047 14 C -0.555 4.555 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.011 4.011 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.948 13.644 9.857 19.552 hybrid contribution 0.472 -1.308 -0.326 1.428 sum -9.476 12.336 9.532 18.244 Atomic orbital electron populations 1.21873 0.94052 1.02308 1.02386 1.22221 0.97488 0.98202 0.97829 1.21845 1.01794 0.94488 1.02043 1.21488 0.81449 0.91125 0.97821 1.21650 1.01809 0.99477 0.95399 1.86672 1.18688 1.83306 1.46928 1.21361 0.80395 0.87361 0.82435 1.90657 1.43006 1.76961 1.31102 1.48222 1.49512 1.17456 1.18405 1.22487 0.94027 0.98645 0.88125 1.22062 0.96720 0.94035 1.03348 1.20984 0.97494 0.95514 0.94940 1.19621 0.94060 0.93496 0.97510 1.21114 1.20881 1.11459 1.02052 0.90853 1.25013 0.95927 0.97723 0.94732 1.69904 1.27688 1.37931 1.18727 0.86823 0.77751 0.83548 0.81417 1.20377 1.21454 1.19072 1.22060 0.97946 0.97560 0.99481 1.21666 0.95009 0.81841 1.02598 0.91902 0.92491 0.92034 0.88883 0.91784 0.92338 0.92078 0.90554 0.91243 0.90977 0.76787 0.90719 0.90094 0.91962 0.88873 0.91694 0.96630 0.97008 0.92758 0.91992 0.91087 0.89604 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.61 37.16 0.32 -1.06 16 2 C -0.14 -1.32 2.03 -90.62 -0.18 -1.50 16 3 C -0.14 -1.18 8.60 37.16 0.32 -0.86 16 4 C 0.13 1.49 0.55 -91.77 -0.05 1.44 16 5 C -0.13 -1.42 7.41 37.16 0.28 -1.15 16 6 O -0.55 -6.82 12.50 -35.23 -0.44 -7.27 16 7 C 0.50 7.24 5.19 -10.98 -0.06 7.18 16 8 O -0.54 -9.50 15.40 5.55 0.09 -9.42 16 9 N -0.60 -8.20 2.96 -172.51 -0.51 -8.72 16 10 C 0.09 1.09 4.32 -3.49 -0.02 1.08 16 11 C -0.12 -1.94 5.20 -26.39 -0.14 -2.08 16 12 C -0.07 -1.25 2.10 -90.58 -0.19 -1.44 16 13 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 14 C -0.52 -13.75 8.94 -34.44 -0.31 -14.06 16 15 H 0.07 2.06 7.30 -52.49 -0.38 1.68 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 18 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.13 -2.05 5.36 -26.61 -0.14 -2.19 16 23 C 0.11 1.55 6.44 -3.71 -0.02 1.53 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.62 6.88 -51.93 -0.36 0.26 16 26 H 0.06 0.53 6.81 -51.93 -0.35 0.18 16 27 H 0.09 0.85 4.66 -51.93 -0.24 0.61 16 28 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 6.35 -51.93 -0.33 0.14 16 31 H 0.08 0.81 6.68 -51.93 -0.35 0.47 16 32 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 34 H 0.38 4.06 5.92 45.56 0.27 4.33 16 35 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.08 0.83 2.55 -51.93 -0.13 0.69 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.60 6.91 -51.93 -0.36 1.24 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 41 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -31.29 338.22 -7.12 -38.41 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.06 Total: 3.09 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.39 Total: -11.63 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.26 Total: -34.89 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.35 Total: -16.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.29 -7.12 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569727508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.707 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds