Wall clock time and date at job start Tue Mar 31 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00314 * 2 1 4 4 H 1.08997 * 112.84798 * 21.69757 * 3 2 1 5 5 C 1.53778 * 113.61863 * 250.49878 * 3 2 1 6 6 C 1.53784 * 87.08072 * 220.01867 * 5 3 2 7 7 H 1.09004 * 113.61214 * 270.79467 * 6 5 3 8 8 N 1.46500 * 113.61385 * 139.98335 * 6 5 3 9 9 C 1.34777 * 120.00376 * 104.50270 * 8 6 5 10 10 O 1.21279 * 119.99633 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00115 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.53777 * 87.08250 * 25.43148 * 6 5 3 24 24 C 1.53005 * 113.61600 * 89.11611 * 23 6 5 25 25 C 1.52996 * 113.61634 * 220.02216 * 23 6 5 26 26 H 1.09003 * 109.46949 * 59.99779 * 1 2 3 27 27 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46838 * 299.99871 * 1 2 3 29 29 H 1.09001 * 113.61747 * 105.46706 * 5 3 2 30 30 H 1.09004 * 113.68771 * 334.57563 * 5 3 2 31 31 H 0.97004 * 119.99396 * 284.50044 * 8 6 5 32 32 H 1.09002 * 109.47060 * 60.00000 * 11 9 8 33 33 H 1.09001 * 109.46927 * 300.00196 * 11 9 8 34 34 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 35 35 H 1.09001 * 109.46832 * 300.00193 * 12 11 9 36 36 H 1.09002 * 109.47103 * 59.99753 * 13 12 11 37 37 H 1.08998 * 109.46862 * 300.00565 * 13 12 11 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.46698 * 59.99514 * 24 23 6 42 42 H 1.09000 * 109.47090 * 179.97438 * 24 23 6 43 43 H 1.09000 * 109.47221 * 300.00226 * 24 23 6 44 44 H 1.08997 * 109.47841 * 59.99678 * 25 23 6 45 45 H 1.08996 * 109.47541 * 180.02562 * 25 23 6 46 46 H 1.09002 * 109.46809 * 299.99788 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3299 2.0717 0.3714 5 6 2.6906 1.6769 -1.3281 6 6 3.8010 2.3278 -0.4866 7 1 3.6120 3.3746 -0.2489 8 7 5.1482 2.0988 -1.0148 9 6 5.7981 3.0900 -1.6563 10 8 5.2678 4.1718 -1.7959 11 6 7.1841 2.8546 -2.1990 12 6 7.6906 4.1302 -2.8750 13 6 9.0975 3.8911 -3.4266 14 6 9.6038 5.1666 -4.1031 15 6 10.9898 4.9311 -4.6459 16 1 11.4621 3.9679 -4.5212 17 6 11.6544 5.9451 -5.3026 18 7 11.0790 7.1177 -5.4549 19 14 13.3721 5.6530 -5.9760 20 1 13.7911 4.2601 -5.6764 21 1 13.3698 5.8633 -7.4461 22 1 14.3207 6.6030 -5.3415 23 6 3.4078 1.3575 0.6397 24 6 4.1554 0.0235 0.5885 25 6 3.4217 1.9949 2.0305 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.1216 2.3889 -1.9260 30 1 3.0275 0.8147 -1.9038 31 1 5.5724 1.2336 -0.9027 32 1 7.1564 2.0437 -2.9269 33 1 7.8536 2.5864 -1.3818 34 1 7.7185 4.9408 -2.1468 35 1 7.0211 4.3988 -3.6922 36 1 9.0693 3.0806 -4.1549 37 1 9.7671 3.6222 -2.6097 38 1 9.6319 5.9773 -3.3752 39 1 8.9339 5.4349 -4.9201 40 1 11.5467 7.8312 -5.9166 41 1 5.2269 0.2041 0.6740 42 1 3.8268 -0.6090 1.4131 43 1 3.9453 -0.4746 -0.3580 44 1 2.7171 2.8261 2.0565 45 1 3.1345 1.2514 2.7739 46 1 4.4241 2.3614 2.2521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:26 Heat of formation + Delta-G solvation = -93.251093 kcal Electronic energy + Delta-G solvation = -22144.366913 eV Core-core repulsion = 18840.770465 eV Total energy + Delta-G solvation = -3303.596448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97071 -39.08399 -36.87666 -34.85152 -33.45438 -32.55573 -30.94162 -29.65943 -27.95273 -27.20221 -25.86065 -24.09617 -22.88728 -22.09646 -20.24421 -19.94337 -19.06376 -17.31680 -16.81212 -16.16106 -15.91000 -15.85359 -15.44972 -15.22949 -14.45421 -14.43964 -14.18290 -13.82123 -13.59285 -13.39864 -12.65084 -12.59576 -12.51120 -12.40285 -12.20063 -12.02438 -11.79358 -11.65627 -11.57949 -11.18463 -11.02273 -10.97276 -10.85552 -10.50527 -10.46200 -10.37996 -9.77614 -9.72633 -9.58274 -9.18814 -9.05720 -8.94259 -8.28758 -5.93346 -3.95627 2.74177 3.03478 3.34492 3.41570 3.45672 3.55629 3.96751 4.12358 4.40853 4.49485 4.50720 4.80766 4.82794 4.93195 4.99450 5.01843 5.21003 5.24329 5.29891 5.33343 5.36596 5.41072 5.42836 5.50296 5.60171 5.62353 5.65490 5.73650 5.90480 5.96234 6.03257 6.17697 6.33945 6.41389 6.58926 6.83546 6.87686 7.05726 7.23301 7.49067 7.76896 7.92916 8.08476 8.30943 8.50377 9.12379 9.67897 11.18022 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.045097 B = 0.002268 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.731359 B =12342.344924 C =12419.177724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.072 3.928 4 H 0.090 0.910 5 C -0.170 4.170 6 C 0.133 3.867 7 H 0.115 0.885 8 N -0.725 5.725 9 C 0.513 3.487 10 O -0.536 6.536 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.088 4.088 24 C -0.124 4.124 25 C -0.138 4.138 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.401 0.599 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 -16.258 14.849 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.013 3.987 4 H 0.108 0.892 5 C -0.209 4.209 6 C 0.027 3.973 7 H 0.133 0.867 8 N -0.378 5.378 9 C 0.301 3.699 10 O -0.412 6.412 11 C -0.180 4.180 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.147 4.147 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.089 4.089 24 C -0.181 4.181 25 C -0.196 4.196 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.237 0.763 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.111 -15.457 14.666 29.995 hybrid contribution 0.841 -0.258 -0.384 0.960 sum -20.270 -15.715 14.282 29.357 Atomic orbital electron populations 1.22789 0.81287 1.02702 0.99964 1.87929 1.19425 1.26977 1.94567 1.23661 0.93274 0.85347 0.96421 0.89246 1.23982 0.97931 1.01442 0.97528 1.22204 0.81948 0.99701 0.93427 0.86698 1.46047 1.16949 1.15884 1.58942 1.21142 0.88164 0.83705 0.76928 1.90694 1.68757 1.24847 1.56864 1.21804 0.92254 1.02245 1.01651 1.21443 0.97920 0.94697 1.00024 1.21648 0.93150 1.00929 0.99070 1.19105 0.95536 0.91730 0.95433 1.21327 1.00906 0.97875 1.35598 0.92701 1.25052 0.98005 0.95269 0.96352 1.69988 1.37643 1.02916 1.42927 0.86554 0.84705 0.78168 0.78660 1.19783 1.21073 1.21070 1.22537 0.94688 0.96533 0.95122 1.21405 0.98972 0.94602 1.03144 1.21766 1.02439 1.00350 0.94997 0.94006 0.89718 0.94077 0.90730 0.88779 0.76328 0.89158 0.89160 0.91827 0.91837 0.93493 0.93488 0.96588 0.96590 0.93124 0.92327 0.91638 0.91624 0.92372 0.92128 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.86 101.05 1.10 1.27 16 2 O -0.37 -3.12 9.80 -35.23 -0.35 -3.46 16 3 C 0.07 0.56 3.70 -25.92 -0.10 0.46 16 4 H 0.09 0.60 7.72 -51.93 -0.40 0.20 16 5 C -0.17 -1.53 7.36 -25.92 -0.19 -1.72 16 6 C 0.13 1.29 3.65 -67.12 -0.25 1.05 16 7 H 0.12 1.30 7.49 -51.93 -0.39 0.91 16 8 N -0.73 -7.50 5.26 -53.02 -0.28 -7.78 16 9 C 0.51 7.22 7.83 -10.98 -0.09 7.13 16 10 O -0.54 -9.80 15.62 5.56 0.09 -9.72 16 11 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 12 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 13 C -0.11 -2.31 5.15 -26.74 -0.14 -2.44 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 19 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.09 -0.68 1.35 -153.70 -0.21 -0.88 16 24 C -0.12 -0.88 7.46 37.16 0.28 -0.60 16 25 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.87 7.66 -51.93 -0.40 0.48 16 31 H 0.40 3.17 6.58 -40.82 -0.27 2.90 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.06 0.37 7.04 -51.93 -0.37 0.00 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.49 7.19 -51.93 -0.37 0.12 16 44 H 0.06 0.38 7.95 -51.93 -0.41 -0.03 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -34.02 370.85 -7.79 -41.82 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -8.49 Total: -2.56 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.08 Total: -13.94 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.46 Total: -34.78 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.26 Total: -13.18 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.02 -7.79 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.436 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds