Wall clock time and date at job start Tue Mar 31 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99809 * 2 1 4 4 H 1.08997 * 112.85064 * 338.30755 * 3 2 1 5 5 C 1.53778 * 113.61391 * 109.50505 * 3 2 1 6 6 C 1.53784 * 87.08072 * 89.11650 * 5 3 2 7 7 H 1.09004 * 113.61214 * 270.79467 * 6 5 3 8 8 N 1.46500 * 113.61385 * 139.98335 * 6 5 3 9 9 C 1.34777 * 120.00376 * 104.50270 * 8 6 5 10 10 O 1.21279 * 119.99633 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00115 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.53777 * 87.08250 * 25.43148 * 6 5 3 24 24 C 1.53005 * 113.61600 * 89.11611 * 23 6 5 25 25 C 1.52998 * 113.61820 * 220.01881 * 23 6 5 26 26 H 1.09008 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47274 * 299.99802 * 1 2 3 28 28 H 1.09006 * 109.47294 * 60.00412 * 1 2 3 29 29 H 1.08991 * 113.61794 * 334.56576 * 5 3 2 30 30 H 1.09004 * 113.68771 * 203.67346 * 5 3 2 31 31 H 0.97004 * 119.99396 * 284.50044 * 8 6 5 32 32 H 1.09002 * 109.47060 * 60.00000 * 11 9 8 33 33 H 1.09001 * 109.46927 * 300.00196 * 11 9 8 34 34 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 35 35 H 1.09001 * 109.46832 * 300.00193 * 12 11 9 36 36 H 1.09002 * 109.47103 * 59.99753 * 13 12 11 37 37 H 1.08998 * 109.46862 * 300.00565 * 13 12 11 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 40 40 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.46698 * 59.99514 * 24 23 6 42 42 H 1.09000 * 109.47090 * 179.97438 * 24 23 6 43 43 H 1.09000 * 109.47221 * 300.00226 * 24 23 6 44 44 H 1.09005 * 109.47174 * 59.99799 * 25 23 6 45 45 H 1.08991 * 109.47675 * 180.02562 * 25 23 6 46 46 H 1.08996 * 109.46924 * 300.00502 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0718 -0.3713 5 6 2.6905 1.6769 1.3282 6 6 3.9723 1.0482 0.7567 7 1 4.0661 -0.0177 0.9649 8 7 5.1881 1.7997 1.0779 9 6 6.0319 1.3437 2.0249 10 8 5.7847 0.3110 2.6108 11 6 7.2829 2.1165 2.3548 12 6 8.0579 1.3872 3.4540 13 6 9.3276 2.1720 3.7895 14 6 10.1023 1.4430 4.8891 15 6 11.3533 2.2158 5.2191 16 1 11.5736 3.1352 4.6970 17 6 12.2161 1.7496 6.1882 18 7 13.3076 2.4243 6.4765 19 14 11.8348 0.1597 7.0917 20 1 12.4365 -0.9829 6.3584 21 1 12.4015 0.2215 8.4629 22 1 10.3633 -0.0234 7.1719 23 6 3.4076 1.3576 -0.6398 24 6 3.7910 2.7435 -1.1626 25 6 3.6558 0.2461 -1.6614 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 2.2884 1.1429 2.1890 30 1 2.7680 2.7513 1.4950 31 1 5.3859 2.6255 0.6089 32 1 7.0129 3.1143 2.7010 33 1 7.9057 2.1972 1.4639 34 1 8.3279 0.3896 3.1075 35 1 7.4352 1.3062 4.3450 36 1 9.0573 3.1694 4.1362 37 1 9.9503 2.2535 2.8986 38 1 10.3726 0.4454 4.5428 39 1 9.4792 1.3620 5.7798 40 1 13.9148 2.0961 7.1580 41 1 4.8764 2.8203 -1.2262 42 1 3.3580 2.8912 -2.1520 43 1 3.4121 3.5062 -0.4822 44 1 3.1858 -0.6752 -1.3174 45 1 3.2305 0.5344 -2.6226 46 1 4.7285 0.0874 -1.7721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:29 Heat of formation + Delta-G solvation = -87.629048 kcal Electronic energy + Delta-G solvation = -22258.948595 eV Core-core repulsion = 18955.595937 eV Total energy + Delta-G solvation = -3303.352658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02693 -39.13237 -36.85114 -34.98206 -33.46426 -32.51266 -30.95081 -30.04103 -28.02465 -27.07642 -26.17136 -24.32063 -22.84290 -21.91755 -20.21911 -19.98712 -19.06897 -17.32425 -16.87497 -16.50583 -15.98594 -15.88337 -15.54200 -15.26636 -14.42292 -14.28284 -14.15966 -13.83830 -13.63712 -13.44585 -12.77475 -12.64181 -12.56664 -12.46756 -12.40666 -12.04478 -11.97933 -11.89757 -11.71602 -11.31638 -11.09083 -11.01618 -10.70004 -10.52817 -10.49920 -9.91726 -9.84565 -9.76268 -9.61243 -9.35842 -9.08863 -9.06837 -8.46896 -5.98220 -3.95457 2.71817 3.11720 3.21847 3.37617 3.44450 3.51002 4.00403 4.11725 4.47212 4.52547 4.56526 4.76501 4.77452 4.88839 4.94269 4.99675 5.19151 5.21243 5.22760 5.28102 5.28281 5.34180 5.37455 5.48974 5.52316 5.60654 5.68470 5.75949 5.87264 5.91819 6.07204 6.08360 6.20013 6.39040 6.47600 6.72483 6.80149 6.86704 7.02812 7.41563 7.46993 7.54362 7.87487 8.28953 8.60918 9.06839 9.65310 11.15274 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002494 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.545899 B =11224.057616 C =11611.910758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.073 3.927 4 H 0.078 0.922 5 C -0.173 4.173 6 C 0.140 3.860 7 H 0.117 0.883 8 N -0.729 5.729 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.140 4.140 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.518 4.518 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 C -0.091 4.091 24 C -0.134 4.134 25 C -0.134 4.134 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.011 0.989 39 H 0.015 0.985 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.195 0.365 -18.613 32.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.014 3.986 4 H 0.096 0.904 5 C -0.213 4.213 6 C 0.035 3.965 7 H 0.135 0.865 8 N -0.382 5.382 9 C 0.300 3.700 10 O -0.412 6.412 11 C -0.180 4.180 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.556 4.556 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.093 4.093 24 C -0.192 4.192 25 C -0.191 4.191 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.235 0.765 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.089 -0.566 -18.057 32.560 hybrid contribution -0.223 -0.122 0.329 0.416 sum -27.311 -0.688 -17.728 32.568 Atomic orbital electron populations 1.22817 0.80830 1.02925 0.99982 1.87883 1.19689 1.26167 1.94471 1.23010 0.93857 0.85318 0.96385 0.90424 1.23962 0.97295 1.01701 0.98295 1.22482 0.82703 0.97861 0.93485 0.86520 1.46152 1.23641 1.27568 1.40808 1.21109 0.84707 0.85674 0.78550 1.90698 1.75403 1.24353 1.50719 1.21784 0.93960 1.00302 1.01927 1.21475 0.96843 0.99256 0.96825 1.21473 0.94177 0.98654 0.99692 1.19581 0.95754 0.95911 0.94082 1.21188 1.04374 1.09528 1.20553 0.91123 1.25049 0.94836 0.97112 0.96690 1.69924 1.12319 1.39392 1.32935 0.86767 0.79289 0.84167 0.79041 1.20323 1.21483 1.18884 1.22495 0.94408 0.97090 0.95258 1.21610 1.02095 0.94034 1.01426 1.21611 1.01670 0.98266 0.97545 0.89457 0.93926 0.93991 0.90321 0.88978 0.76543 0.89072 0.89054 0.91811 0.91831 0.92880 0.92890 0.97051 0.96623 0.92850 0.91383 0.91578 0.91913 0.91093 0.92666 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.86 101.05 1.10 1.28 16 2 O -0.36 -3.22 9.17 -35.23 -0.32 -3.54 16 3 C 0.07 0.55 3.77 -25.92 -0.10 0.45 16 4 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 5 C -0.17 -1.50 7.36 -25.92 -0.19 -1.70 16 6 C 0.14 1.41 3.59 -67.12 -0.24 1.17 16 7 H 0.12 1.52 7.49 -51.93 -0.39 1.13 16 8 N -0.73 -7.33 5.26 -53.02 -0.28 -7.61 16 9 C 0.51 7.07 7.83 -10.98 -0.09 6.99 16 10 O -0.54 -9.76 15.62 5.56 0.09 -9.68 16 11 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 12 C -0.11 -1.83 4.50 -26.74 -0.12 -1.95 16 13 C -0.10 -2.05 5.15 -26.74 -0.14 -2.19 16 14 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 15 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 19 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 23 C -0.09 -0.68 1.35 -153.69 -0.21 -0.89 16 24 C -0.13 -0.71 8.08 37.16 0.30 -0.41 16 25 C -0.13 -1.05 9.04 37.16 0.34 -0.72 16 26 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 31 H 0.40 2.87 6.58 -40.82 -0.27 2.61 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 41 H 0.07 0.34 7.04 -51.93 -0.37 -0.03 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.29 7.34 -51.93 -0.38 -0.10 16 44 H 0.07 0.64 6.96 -51.93 -0.36 0.28 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -34.77 366.39 -7.35 -42.12 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.42 Total: -2.74 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.05 Total: -14.19 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.49 Total: -35.45 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.24 Total: -13.22 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.77 -7.35 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.508 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds