Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.54579 * 2 1 4 4 N 1.46498 * 109.47059 * 59.99574 * 3 2 1 5 5 C 1.34777 * 119.99828 * 179.72339 * 4 3 2 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 3 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 3 8 8 C 1.52990 * 109.47398 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47353 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47600 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47646 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99463 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00445 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00395 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47009 * 59.99434 * 15 13 11 17 17 H 1.48498 * 109.47590 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46858 * 299.99875 * 15 13 11 19 19 C 1.53185 * 109.54312 * 120.17599 * 2 1 3 20 20 C 1.53112 * 109.15468 * 63.06035 * 19 2 1 21 21 O 1.42905 * 109.48487 * 57.48035 * 20 19 2 22 22 C 1.42908 * 114.09418 * 298.88485 * 21 20 19 23 23 C 1.53090 * 109.41702 * 61.16135 * 22 21 20 24 24 H 1.09004 * 109.46928 * 59.99870 * 1 2 3 25 25 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47190 * 300.00261 * 1 2 3 27 27 H 1.09004 * 109.47066 * 299.99842 * 3 2 1 28 28 H 1.08994 * 109.46974 * 179.97438 * 3 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 30 30 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 31 31 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 32 32 H 1.08998 * 109.47508 * 300.00200 * 8 7 5 33 33 H 1.09011 * 109.47182 * 60.00188 * 8 7 5 34 34 H 1.08999 * 109.47616 * 300.00389 * 9 8 7 35 35 H 1.09003 * 109.47280 * 60.00024 * 9 8 7 36 36 H 1.08998 * 109.47382 * 300.00476 * 10 9 8 37 37 H 1.09005 * 109.46800 * 60.00677 * 10 9 8 38 38 H 0.96996 * 120.00393 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.52527 * 182.87923 * 19 2 1 40 40 H 1.08998 * 109.52248 * 303.07321 * 19 2 1 41 41 H 1.08997 * 109.40702 * 297.49352 * 20 19 2 42 42 H 1.09000 * 109.48547 * 177.50642 * 20 19 2 43 43 H 1.08998 * 109.47994 * 301.17671 * 22 21 20 44 44 H 1.09007 * 109.48526 * 181.14850 * 22 21 20 45 45 H 1.08996 * 109.52064 * 182.48508 * 23 22 21 46 46 H 1.08996 * 109.57358 * 62.32447 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 7 1.5543 2.1330 1.1961 5 6 1.8862 3.4213 1.4122 6 8 2.5842 4.0099 0.6138 7 6 1.3899 4.1307 2.6457 8 6 1.9058 5.5709 2.6482 9 6 1.4014 6.2913 3.9002 10 6 1.9168 7.7318 3.9024 11 6 1.4205 8.4411 5.1359 12 1 0.7992 7.9169 5.8470 13 6 1.7586 9.7595 5.3562 14 7 2.5148 10.3979 4.4901 15 14 1.1440 10.6385 6.8856 16 1 1.6406 9.9338 8.0947 17 1 1.6431 12.0371 6.8870 18 1 -0.3410 10.6434 6.8905 19 6 2.0424 -0.7256 1.2480 20 6 1.5930 -2.1885 1.1986 21 8 2.0771 -2.7957 -0.0010 22 6 1.5913 -2.1878 -1.1997 23 6 2.0424 -0.7257 -1.2479 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6792 1.9561 -0.8900 28 1 3.1318 1.4404 0.0005 29 1 0.9963 1.6623 1.8348 30 1 0.2999 4.1355 2.6483 31 1 1.7529 3.6127 3.5335 32 1 2.9958 5.5665 2.6454 33 1 1.5423 6.0887 1.7604 34 1 0.3114 6.2957 3.9026 35 1 1.7645 5.7738 4.7882 36 1 3.0067 7.7278 3.8998 37 1 1.5532 8.2491 3.0144 38 1 2.7530 11.3253 4.6452 39 1 3.1311 -0.6811 1.2740 40 1 1.6359 -0.2482 2.1396 41 1 0.5040 -2.2335 1.2151 42 1 1.9920 -2.7208 2.0621 43 1 0.5023 -2.2330 -1.2146 44 1 1.9890 -2.7197 -2.0641 45 1 1.6360 -0.2484 -2.1395 46 1 3.1311 -0.6802 -1.2744 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = -124.182241 kcal Electronic energy + Delta-G solvation = -22148.481704 eV Core-core repulsion = 18843.543981 eV Total energy + Delta-G solvation = -3304.937723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69227 -39.37898 -36.53007 -34.86215 -33.53481 -32.58127 -31.59791 -29.88250 -28.36399 -27.41053 -25.42741 -24.13498 -23.22721 -22.02073 -20.28156 -19.95434 -19.10743 -17.22543 -16.52056 -16.31080 -16.10456 -15.93401 -15.78124 -15.36056 -15.02537 -14.47935 -14.38817 -14.13220 -13.80788 -13.45000 -12.93351 -12.70275 -12.58371 -12.45289 -12.04996 -11.86736 -11.75619 -11.66924 -11.59056 -11.48718 -10.95783 -10.93269 -10.67710 -10.52743 -10.50967 -10.39217 -9.89889 -9.77021 -9.59548 -9.20432 -9.15074 -8.97445 -8.29019 -5.93801 -3.96445 2.75194 3.12024 3.36011 3.40350 3.42581 3.45569 4.11672 4.13525 4.24471 4.49846 4.54785 4.70727 4.73821 4.81900 4.89225 5.10159 5.11500 5.15194 5.26089 5.30485 5.32597 5.38386 5.41255 5.41990 5.47237 5.52426 5.58847 5.64265 5.74678 5.88317 5.92388 6.15603 6.31085 6.33827 6.56651 6.75665 6.85816 7.03890 7.21633 7.43717 7.75262 7.91740 8.07615 8.28471 8.49270 9.11069 9.67003 11.17490 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047970 B = 0.002206 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.563535 B =12688.643253 C =12966.340584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C 0.131 3.869 4 N -0.737 5.737 5 C 0.511 3.489 6 O -0.536 6.536 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.146 4.146 20 C 0.059 3.941 21 O -0.383 6.383 22 C 0.060 3.940 23 C -0.144 4.144 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.397 0.603 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 -28.288 -10.045 30.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 C 0.007 3.993 4 N -0.391 5.391 5 C 0.298 3.702 6 O -0.411 6.411 7 C -0.179 4.179 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.184 4.184 20 C -0.017 4.017 21 O -0.301 6.301 22 C -0.016 4.016 23 C -0.182 4.182 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.864 -27.826 -10.671 30.051 hybrid contribution -0.753 0.620 1.128 1.491 sum -4.617 -27.206 -9.543 29.198 Atomic orbital electron populations 1.22009 0.93863 1.02087 1.02653 1.20841 0.96283 0.94400 0.95976 1.21313 0.99176 0.90347 0.88441 1.46134 1.54727 1.12750 1.25530 1.21102 0.79800 0.81118 0.88173 1.90709 1.37304 1.65842 1.47272 1.21791 1.02350 0.98587 0.95142 1.21445 1.01187 0.91407 1.00080 1.21647 0.99473 0.98878 0.94775 1.19094 0.96449 0.89299 0.96892 1.21246 1.31351 0.96367 1.06928 0.92822 1.25045 0.95303 0.97674 0.96586 1.69964 1.36878 1.10963 1.35668 0.86665 0.79111 0.78654 0.83589 1.20289 1.21327 1.20300 1.22272 1.02386 0.96096 0.97667 1.22623 0.98450 0.92912 0.87759 1.87950 1.71829 1.56587 1.13781 1.22602 0.98454 0.92752 0.87827 1.22187 1.02319 0.96160 0.97527 0.91954 0.92087 0.92176 0.91459 0.91516 0.76746 0.89234 0.89218 0.91820 0.91832 0.93510 0.93500 0.96596 0.96600 0.92992 0.90578 0.90662 0.92893 0.88819 0.92878 0.88804 0.90376 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 7.76 37.16 0.29 -0.53 16 2 C -0.07 -0.47 0.53 -154.32 -0.08 -0.56 16 3 C 0.13 1.19 4.57 -4.04 -0.02 1.17 16 4 N -0.74 -7.14 4.99 -60.30 -0.30 -7.44 16 5 C 0.51 7.08 7.83 -10.98 -0.09 6.99 16 6 O -0.54 -9.86 15.98 5.55 0.09 -9.77 16 7 C -0.14 -1.84 5.70 -27.89 -0.16 -2.00 16 8 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 9 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.15 -0.91 4.70 -26.58 -0.13 -1.03 16 20 C 0.06 0.36 6.57 37.22 0.24 0.61 16 21 O -0.38 -3.09 10.77 -35.23 -0.38 -3.47 16 22 C 0.06 0.36 6.57 37.20 0.24 0.60 16 23 C -0.14 -0.86 4.92 -26.59 -0.13 -1.00 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.30 5.02 -51.93 -0.26 0.04 16 26 H 0.06 0.32 6.87 -51.93 -0.36 -0.04 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.40 2.78 6.21 -40.82 -0.25 2.52 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.40 6.98 -51.93 -0.36 0.04 16 41 H 0.05 0.27 6.61 -51.93 -0.34 -0.07 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.27 6.60 -51.93 -0.34 -0.07 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -34.36 358.75 -8.32 -42.68 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -8.22 Total: -3.76 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.63 Total: -13.68 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.44 Total: -34.41 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.29 Total: -13.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.36 -8.32 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.501 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds