Wall clock time and date at job start Tue Mar 31 2020 05:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48511 * 109.47040 * 269.99238 * 3 2 1 5 5 H 1.48494 * 109.47494 * 29.99217 * 3 2 1 6 6 H 1.48502 * 109.46977 * 149.99945 * 3 2 1 7 7 C 1.37871 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00152 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00086 * 180.02562 * 7 2 1 10 10 C 1.53010 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46712 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 H 1.09004 * 109.48416 * 54.97651 * 18 17 16 20 20 C 1.53095 * 109.48320 * 174.99820 * 18 17 16 21 21 C 1.53180 * 109.16571 * 177.58721 * 20 18 17 22 22 C 1.53173 * 109.03715 * 303.02545 * 21 20 18 23 23 C 1.53086 * 109.16448 * 56.97797 * 22 21 20 24 24 O 1.42897 * 109.48251 * 294.94082 * 18 17 16 25 25 H 0.96999 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47650 * 60.00076 * 9 7 2 27 27 H 1.09000 * 109.46450 * 299.99219 * 9 7 2 28 28 H 1.08995 * 109.47108 * 59.99483 * 10 9 7 29 29 H 1.09001 * 109.46268 * 299.99107 * 10 9 7 30 30 H 1.09000 * 109.47849 * 59.99518 * 11 10 9 31 31 H 1.08998 * 109.47443 * 299.99385 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 35 35 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 36 36 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 37 37 H 1.09009 * 109.47378 * 299.99899 * 17 16 15 38 38 H 1.08993 * 109.47209 * 59.99808 * 17 16 15 39 39 H 1.08997 * 109.52533 * 297.50170 * 20 18 17 40 40 H 1.09006 * 109.51862 * 57.62295 * 20 18 17 41 41 H 1.09008 * 109.53692 * 62.88915 * 21 20 18 42 42 H 1.09002 * 109.54378 * 183.06434 * 21 20 18 43 43 H 1.09001 * 109.52312 * 176.88142 * 22 21 20 44 44 H 1.09000 * 109.52004 * 297.00476 * 22 21 20 45 45 H 1.08995 * 109.48318 * 62.37448 * 23 22 21 46 46 H 1.09001 * 109.48151 * 182.39500 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0616 -4.0790 0.0015 13 6 7.5686 -4.0789 0.0008 14 8 8.1750 -3.0286 -0.0005 15 7 8.2425 -5.2462 -0.0046 16 6 9.7074 -5.2461 -0.0113 17 6 10.2175 -6.6885 -0.0158 18 6 11.7474 -6.6885 -0.0222 19 1 12.1145 -6.1001 0.8187 20 6 12.2586 -8.1265 0.0991 21 6 13.7889 -8.1237 0.0313 22 6 14.2299 -7.4583 -1.2759 23 6 13.6427 -6.0461 -1.3441 24 8 12.2189 -6.1184 -1.2448 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8751 -0.6804 -0.8889 28 1 3.6585 -3.1502 -0.8892 29 1 3.6580 -3.1504 0.8909 30 1 5.9150 -2.1226 0.8909 31 1 5.9149 -2.1226 -0.8890 32 1 5.6982 -4.5931 -0.8884 33 1 5.6983 -4.5924 0.8916 34 1 7.7574 -6.0862 -0.0039 35 1 10.0667 -4.7306 -0.9020 36 1 10.0749 -4.7340 0.8780 37 1 9.8583 -7.2038 0.8751 38 1 9.8501 -7.2010 -0.9048 39 1 11.9368 -8.5484 1.0512 40 1 11.8580 -8.7257 -0.7187 41 1 14.1902 -7.5662 0.8777 42 1 14.1571 -9.1491 0.0624 43 1 15.3180 -7.4021 -1.3071 44 1 13.8710 -8.0443 -2.1220 45 1 14.0346 -5.4493 -0.5206 46 1 13.9181 -5.5832 -2.2917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:06 Heat of formation + Delta-G solvation = -129.070577 kcal Electronic energy + Delta-G solvation = -21473.603868 eV Core-core repulsion = 18168.454171 eV Total energy + Delta-G solvation = -3305.149697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.05230 -39.49480 -35.77707 -34.88970 -34.09564 -33.01869 -32.49951 -30.35066 -29.15448 -26.22280 -25.13269 -23.88292 -22.13331 -21.75094 -20.73160 -20.09449 -19.97565 -16.99347 -16.86494 -16.56382 -16.53465 -15.82271 -15.76889 -15.08649 -14.96085 -14.67580 -14.17037 -14.11591 -13.66908 -13.64588 -13.16770 -12.70412 -12.61418 -12.38296 -12.21792 -11.99039 -11.77806 -11.70743 -11.62683 -11.44742 -11.21287 -11.06513 -10.75904 -10.69147 -10.49182 -9.93197 -9.86562 -9.76200 -9.60689 -9.36397 -9.12499 -9.08312 -8.46383 -5.97704 -3.94978 2.75618 3.11017 3.33374 3.37971 3.44753 3.51306 4.17813 4.28163 4.34481 4.42418 4.52979 4.64760 4.72022 4.79918 4.87105 4.98179 5.00292 5.15639 5.23070 5.26705 5.30098 5.34854 5.37800 5.38935 5.43655 5.51122 5.59262 5.67581 5.79390 5.80394 5.88739 6.08548 6.20948 6.34453 6.47350 6.73477 6.80925 6.87581 7.03616 7.42288 7.46306 7.55113 7.88025 8.29372 8.61476 9.07347 9.65830 11.15781 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.050908 B = 0.002004 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.881702 B =13965.422223 C =14337.166354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.740 5.740 16 C 0.121 3.879 17 C -0.123 4.123 18 C 0.093 3.907 19 H 0.061 0.939 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.376 6.376 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.399 0.601 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.427 -20.282 0.092 35.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.414 6.414 15 N -0.393 5.393 16 C -0.003 4.003 17 C -0.161 4.161 18 C 0.035 3.965 19 H 0.079 0.921 20 C -0.188 4.188 21 C -0.161 4.161 22 C -0.195 4.195 23 C -0.016 4.016 24 O -0.295 6.295 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 29.596 -19.318 -0.049 35.343 hybrid contribution 0.389 0.275 0.183 0.510 sum 29.985 -19.044 0.134 35.522 Atomic orbital electron populations 1.69923 1.06294 1.26789 1.51571 1.25043 0.94740 0.99225 0.94639 0.86772 0.80434 0.83539 0.78542 1.20316 1.21478 1.18895 1.21193 0.89699 0.94376 1.50411 0.91111 1.19584 0.96874 0.92560 0.96328 1.21479 0.91766 0.99876 1.00910 1.21480 0.97129 0.92939 1.02886 1.21773 0.90287 1.01673 1.04142 1.21072 0.90866 0.83183 0.75045 1.90701 1.70679 1.31364 1.48623 1.46099 1.07061 1.09001 1.77115 1.21256 0.79975 0.96296 1.02764 1.21822 0.93612 0.97103 1.03574 1.22010 0.93713 0.93253 0.87508 0.92069 1.22208 0.96172 0.97378 1.03032 1.21589 0.95564 1.01255 0.97687 1.22200 1.01091 0.97610 0.98620 1.22566 0.81092 0.95706 1.02270 1.87973 1.20996 1.82278 1.38266 0.92851 0.96610 0.97040 0.92868 0.92855 0.91836 0.91809 0.89013 0.89045 0.76715 0.90770 0.91902 0.89834 0.90241 0.90744 0.90856 0.91786 0.91394 0.90908 0.91004 0.93157 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.52 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.20 16 11 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 13 C 0.51 7.16 7.83 -10.98 -0.09 7.07 16 14 O -0.54 -9.93 15.98 5.55 0.09 -9.85 16 15 N -0.74 -7.44 5.56 -60.30 -0.33 -7.77 16 16 C 0.12 1.17 5.57 -4.04 -0.02 1.15 16 17 C -0.12 -0.80 5.04 -26.73 -0.13 -0.94 16 18 C 0.09 0.63 2.64 -26.68 -0.07 0.56 16 19 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 20 C -0.15 -0.79 5.42 -26.59 -0.14 -0.93 16 21 C -0.12 -0.59 6.03 -26.55 -0.16 -0.75 16 22 C -0.16 -0.80 6.14 -26.60 -0.16 -0.96 16 23 C 0.06 0.39 6.84 37.20 0.25 0.64 16 24 O -0.38 -3.30 9.94 -35.23 -0.35 -3.65 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.40 2.73 8.47 -40.82 -0.35 2.39 16 35 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -35.23 367.53 -9.15 -44.38 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -8.71 Total: -4.15 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.49 Total: -14.61 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.44 Total: -35.65 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.26 Total: -13.50 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.23 -9.15 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.690 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds