Wall clock time and date at job start Tue Mar 31 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47004 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99538 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99725 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47192 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 H 1.08995 * 109.48011 * 305.00088 * 18 17 16 20 20 C 1.53092 * 109.48299 * 184.97538 * 18 17 16 21 21 C 1.53172 * 109.16276 * 182.41815 * 20 18 17 22 22 C 1.53175 * 109.04566 * 56.96905 * 21 20 18 23 23 C 1.53098 * 109.15988 * 303.02134 * 22 21 20 24 24 O 1.42902 * 109.47796 * 65.02314 * 18 17 16 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 1.09003 * 109.46690 * 300.00171 * 12 11 10 33 33 H 1.08993 * 109.47209 * 60.00145 * 12 11 10 34 34 H 0.97001 * 120.00485 * 359.97438 * 15 13 12 35 35 H 1.08995 * 109.47322 * 299.99529 * 16 15 13 36 36 H 1.09001 * 109.47048 * 59.99797 * 16 15 13 37 37 H 1.09009 * 109.46941 * 300.00209 * 17 16 15 38 38 H 1.09001 * 109.47054 * 60.00089 * 17 16 15 39 39 H 1.09000 * 109.52202 * 302.31532 * 20 18 17 40 40 H 1.09007 * 109.52107 * 62.49897 * 20 18 17 41 41 H 1.09002 * 109.53664 * 297.09535 * 21 20 18 42 42 H 1.09004 * 109.61291 * 176.88295 * 21 20 18 43 43 H 1.09006 * 109.51942 * 183.12052 * 22 21 20 44 44 H 1.08996 * 109.57862 * 62.95830 * 22 21 20 45 45 H 1.08999 * 109.48071 * 297.62865 * 23 22 21 46 46 H 1.09001 * 109.47697 * 177.59558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4748 -6.1499 0.0324 13 6 1.7213 -7.4549 0.0391 14 8 0.5085 -7.4551 0.0391 15 7 2.3953 -8.6221 0.0461 16 6 1.6629 -9.8909 0.0532 17 6 2.6571 -11.0537 0.0597 18 6 1.8922 -12.3788 0.0664 19 1 1.1998 -12.3944 0.9080 20 6 2.8821 -13.5391 0.1981 21 6 2.1146 -14.8635 0.1433 22 6 1.3167 -14.9252 -1.1628 23 6 0.3872 -13.7113 -1.2416 24 8 1.1617 -12.5135 -1.1543 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.1015 -6.0971 -0.8579 33 1 3.1014 -6.0871 0.9220 34 1 3.3653 -8.6221 0.0465 35 1 1.0359 -9.9435 0.9432 36 1 1.0365 -9.9538 -0.8367 37 1 3.2838 -11.0009 -0.8307 38 1 3.2838 -10.9910 0.9494 39 1 3.6000 -13.5002 -0.6212 40 1 3.4090 -13.4623 1.1493 41 1 1.4319 -14.9245 0.9909 42 1 2.8176 -15.6957 0.1808 43 1 0.7241 -15.8398 -1.1847 44 1 2.0021 -14.9148 -2.0103 45 1 -0.3249 -13.7446 -0.4171 46 1 -0.1520 -13.7273 -2.1888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:09 Heat of formation + Delta-G solvation = -136.427470 kcal Electronic energy + Delta-G solvation = -21450.286086 eV Core-core repulsion = 18144.817370 eV Total energy + Delta-G solvation = -3305.468716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04577 -39.48625 -35.77233 -34.94122 -34.09051 -33.04130 -32.71017 -30.01757 -28.88502 -25.83693 -24.88683 -23.82484 -22.31700 -21.82579 -20.75515 -20.33076 -20.01670 -16.98685 -16.84776 -16.65321 -16.47193 -15.80683 -15.75667 -15.08101 -14.94942 -14.65917 -14.13474 -13.73353 -13.63879 -13.61050 -13.16670 -12.87028 -12.63245 -12.32796 -12.29443 -12.14681 -11.76063 -11.62928 -11.44079 -11.21734 -11.06298 -10.90167 -10.75226 -10.61290 -10.53456 -10.06725 -9.89848 -9.81066 -9.70099 -9.46493 -9.11752 -8.42786 -8.24018 -6.27407 -3.95820 2.76550 3.11498 3.33980 3.48050 3.50723 3.69489 4.18182 4.28752 4.34916 4.42897 4.61434 4.65341 4.72717 4.80465 4.87688 4.98874 5.00911 5.16269 5.23522 5.27253 5.31344 5.35903 5.39287 5.44032 5.49932 5.51487 5.59744 5.68168 5.79973 5.80843 5.89441 6.09327 6.25117 6.35351 6.49065 6.76519 6.81554 6.93513 7.08963 7.46892 7.54114 7.67077 8.29939 8.32566 8.55776 8.97933 9.76912 11.13310 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.063227 B = 0.001893 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.741314 B =14790.883326 C =15058.685627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 1.070 2.930 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.006 3.994 10 C -0.103 4.103 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.740 5.740 16 C 0.121 3.879 17 C -0.123 4.123 18 C 0.093 3.907 19 H 0.061 0.939 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.376 6.376 25 H 0.269 0.731 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.776 -33.009 0.298 33.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.192 4.192 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.031 4.031 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.393 5.393 16 C -0.003 4.003 17 C -0.161 4.161 18 C 0.035 3.965 19 H 0.079 0.921 20 C -0.188 4.188 21 C -0.161 4.161 22 C -0.195 4.195 23 C -0.017 4.017 24 O -0.295 6.295 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.232 0.768 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.684 -31.219 0.153 31.927 hybrid contribution 0.743 -2.102 0.209 2.239 sum 7.427 -33.322 0.362 34.141 Atomic orbital electron populations 1.70766 1.06879 1.30661 1.46783 1.25865 0.96617 1.02740 0.93967 0.83544 0.74853 0.75408 0.76399 1.20810 1.21526 1.21518 1.22089 0.94212 0.92208 1.55505 0.93429 1.19232 0.94732 0.93115 0.96028 1.21518 0.98791 0.93499 1.00287 1.21461 0.97109 0.92808 1.02869 1.21771 1.00010 0.92050 1.03990 1.21060 0.88439 0.85596 0.75088 1.90706 1.14286 1.87711 1.48513 1.46100 1.10188 1.05845 1.77172 1.21261 0.94516 0.81734 1.02797 1.21822 0.98202 0.92512 1.03563 1.22007 0.92915 0.93998 0.87564 0.92059 1.22206 0.98736 0.94824 1.03009 1.21587 0.99279 0.97526 0.97699 1.22204 0.99685 0.99017 0.98614 1.22573 0.92692 0.84075 1.02311 1.87976 1.62780 1.40567 1.38187 0.92044 0.97497 0.97478 0.93301 0.93322 0.91886 0.91853 0.89127 0.89149 0.76757 0.91877 0.90762 0.90259 0.89844 0.90866 0.90742 0.91780 0.91399 0.90900 0.91011 0.93145 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.21 13.65 55.43 0.76 -28.46 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 3 Si 1.07 26.06 29.90 -169.99 -5.08 20.97 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.60 -17.89 9.11 -34.44 -0.31 -18.21 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.16 4.28 -27.88 -0.12 0.04 16 10 C -0.10 -2.21 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 12 C -0.14 -1.91 5.70 -27.88 -0.16 -2.07 16 13 C 0.51 7.48 7.83 -10.99 -0.09 7.39 16 14 O -0.54 -10.30 15.98 5.55 0.09 -10.21 16 15 N -0.74 -7.77 5.56 -60.29 -0.33 -8.11 16 16 C 0.12 1.22 5.57 -4.04 -0.02 1.19 16 17 C -0.12 -0.83 5.04 -26.73 -0.13 -0.97 16 18 C 0.09 0.66 2.64 -26.68 -0.07 0.59 16 19 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 20 C -0.15 -0.81 5.42 -26.59 -0.14 -0.96 16 21 C -0.12 -0.61 6.03 -26.55 -0.16 -0.77 16 22 C -0.16 -0.83 6.14 -26.59 -0.16 -0.99 16 23 C 0.06 0.40 6.84 37.21 0.25 0.65 16 24 O -0.38 -3.39 9.94 -35.23 -0.35 -3.74 16 25 H 0.27 8.62 7.22 -40.82 -0.29 8.33 16 26 H 0.01 0.19 8.01 -51.92 -0.42 -0.22 16 27 H 0.01 0.20 8.00 -51.93 -0.42 -0.22 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.40 2.88 8.47 -40.82 -0.35 2.54 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.91 7.82 -51.93 -0.41 0.51 16 37 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -35.82 369.82 -9.51 -45.33 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -8.69 Total: -3.11 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -1.47 Total: -18.25 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.42 Total: -36.57 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.26 Total: -13.95 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.82 -9.51 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.094 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds