Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99987 * 2 1 4 4 C 1.53000 * 109.52365 * 300.08377 * 3 2 1 5 5 C 1.53035 * 109.49894 * 60.16344 * 3 2 1 6 6 C 1.53038 * 109.54175 * 181.31648 * 5 3 2 7 7 C 1.53195 * 109.31078 * 298.63655 * 6 5 3 8 8 N 1.47207 * 108.85456 * 54.64814 * 7 6 5 9 9 C 1.34773 * 120.81153 * 126.34215 * 8 7 6 10 10 O 1.21283 * 119.99890 * 180.13610 * 9 8 7 11 11 C 1.50700 * 120.00452 * 0.14103 * 9 8 7 12 12 C 1.52997 * 109.47382 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46922 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46922 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47382 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00486 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99692 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47108 * 59.99363 * 19 17 15 21 21 H 1.48495 * 109.47034 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46707 * 299.99424 * 19 17 15 23 23 C 1.46926 * 118.55531 * 306.47735 * 8 7 6 24 24 H 1.08998 * 109.47642 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46995 * 299.99928 * 1 2 3 26 26 H 1.09000 * 109.47510 * 60.00012 * 1 2 3 27 27 H 1.09006 * 109.47174 * 299.92065 * 4 3 2 28 28 H 1.08995 * 109.47348 * 59.91947 * 4 3 2 29 29 H 1.08997 * 109.47087 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46332 * 301.34113 * 5 3 2 31 31 H 1.09004 * 109.45942 * 61.29018 * 5 3 2 32 32 H 1.09002 * 109.49557 * 58.58503 * 6 5 3 33 33 H 1.08996 * 109.50003 * 178.68400 * 6 5 3 34 34 H 1.08996 * 109.58670 * 174.42176 * 7 6 5 35 35 H 1.09002 * 109.58549 * 294.69988 * 7 6 5 36 36 H 1.08998 * 109.46962 * 300.00024 * 11 9 8 37 37 H 1.09003 * 109.46750 * 59.99342 * 11 9 8 38 38 H 1.08998 * 109.47350 * 300.00103 * 12 11 9 39 39 H 1.09004 * 109.46747 * 60.00319 * 12 11 9 40 40 H 1.08998 * 109.47498 * 300.00388 * 13 12 11 41 41 H 1.08996 * 109.47166 * 60.00703 * 13 12 11 42 42 H 1.09001 * 109.47635 * 300.00034 * 14 13 12 43 43 H 1.09003 * 109.47457 * 60.00467 * 14 13 12 44 44 H 0.96996 * 119.99840 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.58861 * 293.68122 * 23 8 7 46 46 H 1.08996 * 109.58519 * 173.40013 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5578 2.0666 -1.2478 5 6 1.5623 2.0641 1.2514 6 6 2.1578 3.4738 1.2360 7 6 3.6867 3.3781 1.2499 8 7 4.1203 2.5276 0.1294 9 6 5.0301 2.9700 -0.7611 10 8 5.3750 2.2578 -1.6803 11 6 5.6190 4.3494 -0.6148 12 6 6.6177 4.6003 -1.7464 13 6 7.2150 6.0011 -1.5981 14 6 8.2132 6.2523 -2.7300 15 6 8.8021 7.6317 -2.5837 16 1 8.4947 8.2661 -1.7654 17 6 9.7324 8.0845 -3.4950 18 7 10.1063 7.3123 -4.4917 19 14 10.4617 9.7947 -3.3140 20 1 11.1590 9.8997 -2.0072 21 1 11.4307 10.0384 -4.4126 22 1 9.3755 10.8053 -3.3782 23 6 3.5374 1.1852 0.0000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8795 1.5274 -2.1389 28 1 0.4712 2.1519 -1.2473 29 1 2.0013 3.0623 -1.2467 30 1 0.4743 2.1296 1.2664 31 1 1.9061 1.5342 2.1397 32 1 1.8341 3.9956 0.3354 33 1 1.8195 4.0212 2.1157 34 1 4.1161 4.3737 1.1393 35 1 4.0168 2.9404 2.1921 36 1 4.8220 5.0915 -0.6619 37 1 6.1305 4.4262 0.3446 38 1 7.4146 3.8582 -1.6989 39 1 6.1063 4.5235 -2.7060 40 1 6.4178 6.7430 -1.6459 41 1 7.7262 6.0784 -0.6386 42 1 9.0105 5.5105 -2.6827 43 1 7.7017 6.1752 -3.6895 44 1 10.7611 7.6306 -5.1326 45 1 3.8552 0.5663 0.8391 46 1 3.8682 0.7317 -0.9344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -105.006500 kcal Electronic energy + Delta-G solvation = -22830.097971 eV Core-core repulsion = 19525.991770 eV Total energy + Delta-G solvation = -3304.106201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78265 -38.99037 -36.63151 -34.91425 -32.98208 -32.58792 -31.64135 -29.72519 -27.95775 -26.95388 -26.18631 -24.75298 -23.05227 -22.21558 -20.12223 -19.85700 -18.67393 -17.46387 -16.53762 -16.27304 -16.08919 -15.75244 -15.61993 -15.33225 -14.46165 -14.41428 -14.30090 -14.20384 -13.46613 -13.30270 -13.09024 -12.65199 -12.57493 -12.32106 -12.08127 -12.03688 -11.73058 -11.66410 -11.54803 -11.28619 -11.17214 -10.95885 -10.81593 -10.52392 -10.51183 -10.37833 -9.85271 -9.76447 -9.59342 -9.20794 -8.97596 -8.80621 -8.28820 -5.93632 -3.96243 2.61543 2.74004 3.36125 3.40534 3.42659 3.55297 4.19143 4.38817 4.46822 4.49743 4.63375 4.64210 4.74157 4.93294 4.98588 5.06876 5.13047 5.24985 5.28497 5.33219 5.35905 5.40876 5.41583 5.45210 5.47174 5.56338 5.59751 5.73085 5.76340 5.87976 6.01218 6.15044 6.24270 6.33968 6.56545 6.85618 6.86339 7.03126 7.20853 7.29643 7.75489 7.91982 8.07839 8.20914 8.49406 9.11309 9.67206 11.17695 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040515 B = 0.002631 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.939513 B =10638.227918 C =10919.032583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.102 3.898 4 C -0.176 4.176 5 C -0.144 4.144 6 C -0.136 4.136 7 C 0.104 3.896 8 N -0.616 5.616 9 C 0.517 3.483 10 O -0.531 6.531 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.053 0.947 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.127 3.873 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.073 0.927 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.644 -11.701 14.463 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.296 6.296 3 C 0.062 3.938 4 C -0.233 4.233 5 C -0.182 4.182 6 C -0.174 4.174 7 C -0.019 4.019 8 N -0.352 5.352 9 C 0.306 3.694 10 O -0.406 6.406 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.003 3.997 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.208 -12.259 13.790 28.111 hybrid contribution 0.050 1.168 0.159 1.180 sum -21.159 -11.091 13.949 27.663 Atomic orbital electron populations 1.22784 0.81261 1.02678 1.00236 1.87921 1.19707 1.26905 1.95055 1.21771 0.94110 0.83356 0.94599 1.22401 1.01273 1.01644 0.97984 1.22137 1.01125 0.96405 0.98483 1.21979 0.95317 0.96747 1.03352 1.21845 0.94632 0.95911 0.89513 1.48155 1.42771 1.15867 1.28439 1.21118 0.78075 0.89563 0.80632 1.90707 1.59888 1.58050 1.31960 1.21824 1.00545 0.92565 1.02720 1.21470 0.97205 0.99054 0.96456 1.21643 0.99051 0.93222 1.00807 1.19091 0.93383 0.96392 0.92852 1.21246 1.23275 1.00432 1.10942 0.92826 1.25044 0.96762 0.97389 0.95388 1.69964 1.32411 1.36491 1.14605 0.86670 0.78951 0.84842 0.77582 1.20291 1.21329 1.20298 1.21222 0.89628 0.84341 1.04459 0.89636 0.93814 0.93674 0.91551 0.92280 0.90941 0.91247 0.90858 0.90760 0.90162 0.88840 0.91068 0.89181 0.89099 0.91751 0.91817 0.93524 0.93481 0.96585 0.96602 0.92988 0.90922 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.21 101.05 1.03 1.21 16 2 O -0.38 -3.75 10.35 -35.23 -0.36 -4.11 16 3 C 0.10 0.94 0.88 -90.50 -0.08 0.86 16 4 C -0.18 -1.66 7.76 37.16 0.29 -1.37 16 5 C -0.14 -1.00 4.53 -26.69 -0.12 -1.12 16 6 C -0.14 -0.85 5.74 -26.61 -0.15 -1.01 16 7 C 0.10 0.78 6.35 -3.56 -0.02 0.75 16 8 N -0.62 -6.73 2.43 -172.54 -0.42 -7.14 16 9 C 0.52 7.40 7.70 -10.99 -0.08 7.31 16 10 O -0.53 -9.84 15.39 5.55 0.09 -9.75 16 11 C -0.14 -1.83 4.05 -27.88 -0.11 -1.94 16 12 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.13 1.39 5.47 -3.71 -0.02 1.37 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.24 6.39 -51.93 -0.33 -0.09 16 26 H 0.04 0.29 6.42 -51.93 -0.33 -0.04 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 29 H 0.07 0.72 5.97 -51.93 -0.31 0.41 16 30 H 0.07 0.42 6.48 -51.93 -0.34 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.52 6.33 -51.93 -0.33 0.19 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.63 5.97 -51.93 -0.31 0.32 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 37 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.33 7.00 -51.93 -0.36 0.97 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -33.82 354.65 -7.80 -41.62 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -8.08 Total: -4.19 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.08 Total: -11.78 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.32 Total: -34.08 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.28 Total: -13.86 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.82 -7.80 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.387 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds