Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99527 * 2 1 4 4 C 1.52999 * 109.49919 * 59.93888 * 3 2 1 5 5 C 1.53043 * 109.49896 * 299.83351 * 3 2 1 6 6 C 1.53041 * 109.53627 * 178.68544 * 5 3 2 7 7 C 1.52763 * 109.37888 * 61.24213 * 6 5 3 8 8 N 1.46919 * 109.01196 * 305.58789 * 7 6 5 9 9 C 1.34779 * 120.62680 * 233.58622 * 8 7 6 10 10 O 1.21284 * 119.99695 * 179.71712 * 9 8 7 11 11 C 1.50696 * 120.00395 * 359.72035 * 9 8 7 12 12 C 1.52997 * 109.47242 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 C 1.46923 * 118.74307 * 53.30809 * 8 7 6 24 24 H 1.08998 * 109.47145 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46900 * 300.00118 * 1 2 3 26 26 H 1.08998 * 109.46648 * 60.00119 * 1 2 3 27 27 H 1.08998 * 109.47048 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.46587 * 300.05489 * 4 3 2 29 29 H 1.08991 * 109.47458 * 60.06031 * 4 3 2 30 30 H 1.08994 * 109.46104 * 298.70967 * 5 3 2 31 31 H 1.08998 * 109.45807 * 58.68234 * 5 3 2 32 32 H 1.08999 * 109.49466 * 181.31302 * 6 5 3 33 33 H 1.08993 * 109.50028 * 301.41942 * 6 5 3 34 34 H 1.09005 * 109.50774 * 185.69861 * 7 6 5 35 35 H 1.09002 * 109.43163 * 65.42519 * 7 6 5 36 36 H 1.08996 * 109.47390 * 60.00019 * 11 9 8 37 37 H 1.09001 * 109.46948 * 299.99661 * 11 9 8 38 38 H 1.09001 * 109.47502 * 60.00161 * 12 11 9 39 39 H 1.09001 * 109.47289 * 299.99957 * 12 11 9 40 40 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 41 41 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 42 42 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 43 43 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 44 44 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.58256 * 66.43373 * 23 8 7 46 46 H 1.08993 * 109.59360 * 186.71481 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5579 2.0659 1.2482 5 6 1.5623 2.0641 -1.2515 6 6 2.1578 3.4738 -1.2360 7 6 3.6825 3.3801 -1.2467 8 7 4.1176 2.5287 -0.1313 9 6 5.0274 2.9737 0.7579 10 8 5.3746 2.2631 1.6774 11 6 5.6133 4.3542 0.6098 12 6 6.6126 4.6081 1.7401 13 6 7.2070 6.0100 1.5900 14 6 8.2068 6.2637 2.7199 15 6 8.7926 7.6442 2.5717 16 1 8.4825 8.2775 1.7537 17 6 9.7239 8.0993 3.4812 18 7 10.1011 7.3283 4.4776 19 14 10.4495 9.8108 3.2979 20 1 9.3615 10.8193 3.3634 21 1 11.4200 10.0570 4.3945 22 1 11.1442 9.9165 1.9896 23 6 3.5374 1.1852 0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 2.0010 3.0617 1.2475 28 1 0.4712 2.1512 1.2477 29 1 1.8796 1.5263 2.1389 30 1 1.9062 1.5343 -2.1397 31 1 0.4744 2.1298 -1.2663 32 1 1.8195 4.0212 -2.1157 33 1 1.8342 3.9956 -0.3354 34 1 4.1092 4.3768 -1.1338 35 1 4.0124 2.9440 -2.1896 36 1 4.8149 5.0947 0.6571 37 1 6.1238 4.4311 -0.3502 38 1 7.4111 3.8676 1.6924 39 1 6.1025 4.5311 2.7003 40 1 7.7171 6.0875 0.6298 41 1 6.4084 6.7502 1.6380 42 1 7.6972 6.1861 3.6803 43 1 9.0054 5.5234 2.6715 44 1 10.7565 7.6482 5.1171 45 1 3.8553 0.5664 -0.8391 46 1 3.8704 0.7330 0.9342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -104.932950 kcal Electronic energy + Delta-G solvation = -22834.063219 eV Core-core repulsion = 19529.960208 eV Total energy + Delta-G solvation = -3304.103011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80319 -38.99187 -36.65186 -34.91543 -32.98724 -32.59015 -31.65999 -29.72647 -27.96013 -26.96071 -26.18644 -24.75429 -23.04934 -22.21848 -20.12429 -19.85828 -18.67267 -17.46740 -16.54270 -16.27690 -16.09031 -15.75532 -15.62198 -15.33687 -14.46214 -14.41429 -14.29983 -14.21021 -13.47168 -13.30767 -13.09591 -12.65266 -12.57483 -12.32224 -12.08149 -12.03833 -11.73147 -11.66657 -11.54885 -11.28355 -11.16873 -10.95883 -10.81681 -10.52403 -10.51207 -10.37812 -9.85375 -9.76474 -9.59359 -9.20820 -8.97640 -8.80528 -8.28801 -5.93659 -3.96250 2.61515 2.74244 3.36101 3.40527 3.42652 3.55399 4.19208 4.38870 4.46570 4.49733 4.63651 4.64564 4.74025 4.93259 4.98639 5.07328 5.13076 5.24947 5.28412 5.33198 5.35832 5.41045 5.41553 5.45131 5.47142 5.56403 5.59692 5.73156 5.76221 5.87970 6.01177 6.15012 6.24774 6.34032 6.56529 6.85581 6.86209 7.03104 7.20827 7.29589 7.75480 7.91959 8.07815 8.20809 8.49401 9.11306 9.67163 11.17654 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040554 B = 0.002632 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.269471 B =10634.636716 C =10915.159896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.102 3.898 4 C -0.176 4.176 5 C -0.144 4.144 6 C -0.136 4.136 7 C 0.104 3.896 8 N -0.616 5.616 9 C 0.516 3.484 10 O -0.531 6.531 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.127 3.873 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.073 0.927 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.633 -11.746 -14.413 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.296 6.296 3 C 0.062 3.938 4 C -0.233 4.233 5 C -0.181 4.181 6 C -0.174 4.174 7 C -0.019 4.019 8 N -0.352 5.352 9 C 0.306 3.694 10 O -0.406 6.406 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.004 3.996 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.196 -12.304 -13.742 28.098 hybrid contribution 0.045 1.170 -0.161 1.182 sum -21.150 -11.134 -13.902 27.651 Atomic orbital electron populations 1.22785 0.81260 1.02678 1.00237 1.87924 1.19709 1.26904 1.95058 1.21778 0.94107 0.83363 0.94601 1.22400 1.01277 1.01643 0.97979 1.22135 1.01130 0.96396 0.98475 1.21911 0.95396 0.96768 1.03367 1.21716 0.94671 0.95910 0.89632 1.48089 1.42766 1.15757 1.28573 1.21128 0.78089 0.89568 0.80640 1.90706 1.59809 1.58180 1.31902 1.21824 1.00566 0.92541 1.02727 1.21471 0.97206 0.99042 0.96468 1.21644 0.99058 0.93209 1.00811 1.19091 0.93371 0.96384 0.92869 1.21246 1.23249 1.00381 1.11022 0.92824 1.25048 0.96757 0.97398 0.95385 1.69966 1.32325 1.36496 1.14682 0.86670 0.78936 0.84848 0.77588 1.20299 1.21329 1.20290 1.21229 0.89640 0.84282 1.04463 0.89636 0.93664 0.93820 0.90948 0.92280 0.91543 0.90854 0.91242 0.90140 0.90786 0.88806 0.91130 0.89176 0.89089 0.91751 0.91817 0.93483 0.93522 0.96605 0.96585 0.92988 0.90917 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.21 101.05 1.03 1.21 16 2 O -0.38 -3.75 10.35 -35.23 -0.36 -4.11 16 3 C 0.10 0.94 0.88 -90.50 -0.08 0.86 16 4 C -0.18 -1.66 7.77 37.16 0.29 -1.37 16 5 C -0.14 -1.00 4.53 -26.69 -0.12 -1.12 16 6 C -0.14 -0.86 5.72 -26.83 -0.15 -1.01 16 7 C 0.10 0.78 6.31 -3.94 -0.02 0.75 16 8 N -0.62 -6.72 2.42 -173.03 -0.42 -7.14 16 9 C 0.52 7.39 7.70 -10.99 -0.08 7.30 16 10 O -0.53 -9.83 15.39 5.55 0.09 -9.74 16 11 C -0.14 -1.83 4.05 -27.89 -0.11 -1.94 16 12 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 C 0.13 1.39 5.48 -3.71 -0.02 1.37 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.29 6.42 -51.93 -0.33 -0.04 16 26 H 0.04 0.24 6.39 -51.93 -0.33 -0.09 16 27 H 0.07 0.72 5.97 -51.93 -0.31 0.41 16 28 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 6.48 -51.93 -0.34 0.09 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 34 H 0.09 0.63 5.94 -51.93 -0.31 0.32 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 37 H 0.09 1.05 7.95 -51.93 -0.41 0.64 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.34 7.00 -51.93 -0.36 0.97 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -33.81 354.55 -7.80 -41.61 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -8.07 Total: -4.18 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.08 Total: -11.79 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.32 Total: -34.07 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.28 Total: -13.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.81 -7.80 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.323 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds