Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99527 * 2 1 4 4 C 1.52999 * 109.49919 * 59.93888 * 3 2 1 5 5 C 1.53043 * 109.49896 * 299.83351 * 3 2 1 6 6 C 1.53041 * 109.53627 * 178.68544 * 5 3 2 7 7 C 1.52763 * 109.37888 * 61.24213 * 6 5 3 8 8 N 1.46919 * 109.01196 * 305.58789 * 7 6 5 9 9 C 1.34779 * 120.62680 * 233.58622 * 8 7 6 10 10 O 1.21284 * 119.99695 * 179.71712 * 9 8 7 11 11 C 1.50696 * 120.00395 * 359.72035 * 9 8 7 12 12 C 1.52997 * 109.47242 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 C 1.46923 * 118.74307 * 53.30809 * 8 7 6 24 24 H 1.08998 * 109.47145 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46900 * 300.00118 * 1 2 3 26 26 H 1.08998 * 109.46648 * 60.00119 * 1 2 3 27 27 H 1.08998 * 109.47048 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.46587 * 300.05489 * 4 3 2 29 29 H 1.08991 * 109.47458 * 60.06031 * 4 3 2 30 30 H 1.08994 * 109.46104 * 298.70967 * 5 3 2 31 31 H 1.08998 * 109.45807 * 58.68234 * 5 3 2 32 32 H 1.08999 * 109.49466 * 181.31302 * 6 5 3 33 33 H 1.08993 * 109.50028 * 301.41942 * 6 5 3 34 34 H 1.09005 * 109.50774 * 185.69861 * 7 6 5 35 35 H 1.09002 * 109.43163 * 65.42519 * 7 6 5 36 36 H 1.08996 * 109.47390 * 60.00019 * 11 9 8 37 37 H 1.09001 * 109.46948 * 299.99661 * 11 9 8 38 38 H 1.09001 * 109.47502 * 60.00161 * 12 11 9 39 39 H 1.09001 * 109.47289 * 299.99957 * 12 11 9 40 40 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 41 41 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 42 42 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 43 43 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 44 44 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.58256 * 66.43373 * 23 8 7 46 46 H 1.08993 * 109.59360 * 186.71481 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5579 2.0659 1.2482 5 6 1.5623 2.0641 -1.2515 6 6 2.1578 3.4738 -1.2360 7 6 3.6825 3.3801 -1.2467 8 7 4.1176 2.5287 -0.1313 9 6 5.0274 2.9737 0.7579 10 8 5.3746 2.2631 1.6774 11 6 5.6133 4.3542 0.6098 12 6 6.6126 4.6081 1.7401 13 6 7.2070 6.0100 1.5900 14 6 8.2068 6.2637 2.7199 15 6 8.7926 7.6442 2.5717 16 1 8.4825 8.2775 1.7537 17 6 9.7239 8.0993 3.4812 18 7 10.1011 7.3283 4.4776 19 14 10.4495 9.8108 3.2979 20 1 9.3615 10.8193 3.3634 21 1 11.4200 10.0570 4.3945 22 1 11.1442 9.9165 1.9896 23 6 3.5374 1.1852 0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 2.0010 3.0617 1.2475 28 1 0.4712 2.1512 1.2477 29 1 1.8796 1.5263 2.1389 30 1 1.9062 1.5343 -2.1397 31 1 0.4744 2.1298 -1.2663 32 1 1.8195 4.0212 -2.1157 33 1 1.8342 3.9956 -0.3354 34 1 4.1092 4.3768 -1.1338 35 1 4.0124 2.9440 -2.1896 36 1 4.8149 5.0947 0.6571 37 1 6.1238 4.4311 -0.3502 38 1 7.4111 3.8676 1.6924 39 1 6.1025 4.5311 2.7003 40 1 7.7171 6.0875 0.6298 41 1 6.4084 6.7502 1.6380 42 1 7.6972 6.1861 3.6803 43 1 9.0054 5.5234 2.6715 44 1 10.7565 7.6482 5.1171 45 1 3.8553 0.5664 -0.8391 46 1 3.8704 0.7330 0.9342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -126.117072 kcal Electronic energy + Delta-G solvation = -22834.981832 eV Core-core repulsion = 19529.960208 eV Total energy + Delta-G solvation = -3305.021624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65870 -39.92039 -37.48134 -36.62843 -34.64690 -33.70996 -32.47753 -31.32829 -28.80393 -27.72404 -27.44971 -26.02043 -23.91673 -23.65238 -21.79429 -20.83047 -19.45926 -18.45864 -18.32822 -17.37158 -17.09424 -16.77732 -16.50879 -16.37078 -16.14099 -15.57183 -15.10342 -14.95166 -14.52010 -14.42342 -14.24208 -13.83340 -13.66176 -13.52574 -13.30725 -13.24182 -12.91521 -12.77705 -12.68718 -12.42677 -12.34846 -12.17958 -12.13144 -11.88204 -11.71901 -11.50325 -11.36690 -11.31434 -11.13335 -10.75926 -10.53566 -10.49150 -9.68795 -8.17650 -6.29995 1.40973 1.45198 1.53013 1.57983 1.82259 2.42808 2.88766 3.14943 3.45862 3.70066 3.75090 3.84131 4.01917 4.04888 4.09748 4.14152 4.40980 4.43743 4.47035 4.53128 4.59781 4.63079 4.67652 4.69938 4.72445 4.79790 4.83934 4.86086 4.89128 4.94565 5.01392 5.10903 5.13396 5.18964 5.34095 5.37647 5.39783 5.48565 5.57669 5.79056 5.88983 6.22258 6.25982 6.34877 6.88557 7.15264 7.39593 8.94503 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040554 B = 0.002632 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.269471 B =10634.636716 C =10915.159896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.401 6.401 3 C 0.104 3.896 4 C -0.173 4.173 5 C -0.138 4.138 6 C -0.132 4.132 7 C 0.093 3.907 8 N -0.605 5.605 9 C 0.512 3.488 10 O -0.588 6.588 11 C -0.125 4.125 12 C -0.096 4.096 13 C -0.094 4.094 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.264 1.264 23 C 0.124 3.876 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.062 0.938 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.263 0.737 45 H 0.080 0.920 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.396 -9.806 -17.516 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.321 6.321 3 C 0.064 3.936 4 C -0.230 4.230 5 C -0.176 4.176 6 C -0.170 4.170 7 C -0.028 4.028 8 N -0.339 5.339 9 C 0.302 3.698 10 O -0.468 6.468 11 C -0.164 4.164 12 C -0.134 4.134 13 C -0.131 4.131 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.205 4.205 18 N -0.580 5.580 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.188 1.188 23 C 0.001 3.999 24 H 0.114 0.886 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.007 -10.358 -16.904 30.370 hybrid contribution 0.557 0.474 0.818 1.097 sum -22.450 -9.884 -16.086 29.334 Atomic orbital electron populations 1.22976 0.79622 1.03769 1.01120 1.87891 1.21549 1.27357 1.95255 1.21722 0.92574 0.83567 0.95735 1.22372 1.02384 1.00963 0.97276 1.22112 1.02085 0.96443 0.96966 1.21917 0.94147 0.96434 1.04461 1.22101 0.95863 0.96030 0.88772 1.48096 1.41341 1.15957 1.28485 1.21304 0.78438 0.89616 0.80448 1.90692 1.62003 1.59631 1.34453 1.21706 1.00294 0.92683 1.01710 1.21260 0.97581 0.96925 0.97681 1.21434 0.98002 0.94959 0.98733 1.19059 0.93734 0.95196 0.93908 1.21731 1.23472 1.01259 1.11447 0.91423 1.26119 0.97245 1.02308 0.94852 1.70133 1.33092 1.38972 1.15755 0.85425 0.78250 0.78939 0.77972 1.18822 1.21191 1.18848 1.21220 0.91400 0.84338 1.02988 0.88620 0.93481 0.92109 0.91413 0.90441 0.94087 0.90288 0.89775 0.87307 0.91298 0.87334 0.89296 0.86178 0.86166 0.94031 0.94054 0.91912 0.91893 0.99830 0.99848 0.92879 0.90156 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.21 113.37 1.16 1.41 16 2 O -0.40 -7.67 10.35 -148.98 -1.54 -9.21 16 3 C 0.10 1.81 0.88 -10.71 -0.01 1.80 16 4 C -0.17 -3.20 7.77 71.98 0.56 -2.64 16 5 C -0.14 -1.50 4.53 30.62 0.14 -1.36 16 6 C -0.13 -1.15 5.72 30.53 0.17 -0.98 16 7 C 0.09 1.08 6.31 86.22 0.54 1.62 16 8 N -0.60 -12.51 2.42 -819.74 -1.98 -14.49 16 9 C 0.51 14.60 7.70 87.66 0.67 15.28 16 10 O -0.59 -23.08 15.39 -3.04 -0.05 -23.13 16 11 C -0.12 -3.10 4.05 29.85 0.12 -2.98 16 12 C -0.10 -3.53 4.50 30.60 0.14 -3.39 16 13 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16 14 C 0.02 1.00 4.97 29.85 0.15 1.15 16 15 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 16 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 17 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 18 N -0.94 -59.57 13.29 21.45 0.28 -59.29 16 19 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.12 2.74 5.48 86.36 0.47 3.21 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.53 6.42 -2.39 -0.02 0.52 16 26 H 0.06 0.51 6.39 -2.39 -0.02 0.49 16 27 H 0.07 1.30 5.97 -2.39 -0.01 1.29 16 28 H 0.08 1.11 6.54 -2.39 -0.02 1.09 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.70 6.48 -2.39 -0.02 0.69 16 32 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.72 6.34 -2.39 -0.02 0.70 16 34 H 0.11 0.97 5.94 -2.38 -0.01 0.95 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.12 2.31 7.68 -2.39 -0.02 2.29 16 37 H 0.12 2.34 7.95 -2.39 -0.02 2.32 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 Total: -1.00 -77.63 354.55 4.65 -72.98 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.94 Total: 8.03 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.97 Total: -21.75 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.70 Total: -73.78 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.59 Total: -32.34 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -77.63 4.65 -72.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.133 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds