Wall clock time and date at job start Tue Mar 31 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00566 * 2 1 4 4 H 1.48498 * 109.47204 * 239.99738 * 3 2 1 5 5 H 1.48499 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47547 * 119.99411 * 3 2 1 7 7 C 1.37883 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47146 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47222 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47433 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47759 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99888 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00671 * 179.97438 * 13 12 11 16 16 C 1.46492 * 120.00145 * 179.97438 * 15 13 12 17 17 C 1.53009 * 109.47212 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.46850 * 54.99935 * 17 16 15 19 19 C 1.52998 * 109.46634 * 295.00147 * 17 16 15 20 20 C 1.53009 * 109.46956 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46843 * 60.00175 * 20 19 17 22 22 C 1.53001 * 109.47050 * 300.00019 * 21 20 19 23 23 H 1.09008 * 109.47298 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.47171 * 299.99915 * 22 21 20 25 25 C 1.52997 * 109.47169 * 175.00320 * 17 16 15 26 26 H 0.97003 * 119.99437 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47298 * 59.99206 * 9 7 2 28 28 H 1.09009 * 109.46686 * 299.99106 * 9 7 2 29 29 H 1.08993 * 109.47550 * 59.99508 * 10 9 7 30 30 H 1.09009 * 109.46719 * 299.99234 * 10 9 7 31 31 H 1.09002 * 109.47376 * 59.99529 * 11 10 9 32 32 H 1.09004 * 109.47071 * 299.99573 * 11 10 9 33 33 H 1.09006 * 109.47435 * 59.99591 * 12 11 10 34 34 H 1.09004 * 109.46910 * 299.99998 * 12 11 10 35 35 H 0.97001 * 119.99709 * 0.02562 * 15 13 12 36 36 H 1.09002 * 109.47189 * 60.00269 * 16 15 13 37 37 H 1.09001 * 109.47669 * 299.99708 * 16 15 13 38 38 H 1.09006 * 109.47444 * 299.99295 * 19 17 16 39 39 H 1.08997 * 109.47366 * 60.00109 * 19 17 16 40 40 H 1.08997 * 109.47270 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.46854 * 299.99988 * 20 19 17 42 42 H 1.08999 * 109.46989 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.47549 * 60.00238 * 21 20 19 44 44 H 0.96700 * 114.00311 * 300.00378 * 24 22 21 45 45 H 1.08997 * 109.47549 * 60.00043 * 25 17 16 46 46 H 1.08997 * 109.46932 * 299.99698 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9871 0.0012 12 6 2.4740 -6.1501 0.0005 13 6 1.7206 -7.4552 0.0018 14 8 0.5077 -7.4551 0.0036 15 7 2.3943 -8.6224 0.0010 16 6 1.6617 -9.8910 0.0028 17 6 2.6559 -11.0541 0.0020 18 1 3.3412 -10.9468 0.8427 19 6 3.4487 -11.0463 -1.3065 20 6 4.4434 -12.2090 -1.3071 21 6 3.6831 -13.5305 -1.1793 22 6 2.8902 -13.5383 0.1292 23 1 2.3488 -14.4800 0.2205 24 8 3.7886 -13.3971 1.2315 25 6 1.8951 -12.3754 0.1295 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5570 -0.8895 28 1 0.6239 -2.5567 0.8905 29 1 2.8717 -3.6045 0.8904 30 1 2.8716 -3.6045 -0.8896 31 1 0.8529 -5.0451 -0.8885 32 1 0.8536 -5.0446 0.8915 33 1 3.1015 -6.0924 0.8900 34 1 3.1001 -6.0925 -0.8900 35 1 3.3643 -8.6225 -0.0001 36 1 1.0335 -9.9491 -0.8861 37 1 1.0367 -9.9485 0.8939 38 1 2.7634 -11.1537 -2.1473 39 1 3.9907 -10.1050 -1.3974 40 1 5.0079 -12.2038 -2.2394 41 1 5.1286 -12.1013 -0.4664 42 1 4.3916 -14.3588 -1.1792 43 1 2.9978 -13.6383 -2.0200 44 1 4.4487 -14.1011 1.2936 45 1 1.2098 -12.4827 -0.7112 46 1 1.3303 -12.3809 1.0617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588459407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:43 Heat of formation + Delta-G solvation = -140.332104 kcal Electronic energy + Delta-G solvation = -21805.025677 eV Core-core repulsion = 18499.387643 eV Total energy + Delta-G solvation = -3305.638034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10577 -39.21999 -36.28300 -34.86438 -34.25373 -32.59529 -31.67939 -30.27376 -29.57311 -26.54479 -25.03257 -23.02578 -22.37793 -21.50687 -20.43415 -19.97641 -19.85521 -17.30982 -16.81545 -16.27760 -15.98706 -15.97887 -15.64211 -15.06438 -14.76529 -14.43971 -14.33929 -13.78466 -13.56740 -13.11353 -12.84736 -12.71980 -12.59461 -12.42996 -12.07494 -11.92062 -11.62921 -11.55444 -11.45251 -11.19627 -10.93486 -10.88775 -10.53407 -10.49770 -10.47342 -10.35856 -10.13313 -9.72730 -9.56321 -9.17327 -9.07030 -8.94799 -8.26919 -5.91812 -3.94234 2.81717 3.21315 3.37668 3.41833 3.44232 3.78837 4.18794 4.23315 4.40758 4.51753 4.63905 4.77319 4.79564 4.96216 4.98322 5.08396 5.12442 5.26171 5.37475 5.39296 5.43007 5.45590 5.46125 5.56114 5.57771 5.70012 5.76880 5.81245 5.87449 5.94302 6.09237 6.19768 6.36248 6.42003 6.60721 6.89592 7.07662 7.20622 7.24838 7.52344 7.77706 7.94514 8.09935 8.35482 8.51679 9.13293 9.69015 11.19483 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047755 B = 0.002085 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.183239 B =13425.536565 C =13682.234869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.510 3.490 14 O -0.537 6.537 15 N -0.737 5.737 16 C 0.122 3.878 17 C -0.094 4.094 18 H 0.086 0.914 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.153 4.153 22 C 0.106 3.894 23 H 0.054 0.946 24 O -0.563 6.563 25 C -0.105 4.105 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.375 0.625 45 H 0.078 0.922 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 -31.518 -1.601 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.413 6.413 15 N -0.391 5.391 16 C -0.002 4.002 17 C -0.113 4.113 18 H 0.104 0.896 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.191 4.191 22 C 0.047 3.953 23 H 0.072 0.928 24 O -0.368 6.368 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.222 0.778 45 H 0.097 0.903 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.447 -30.855 -1.500 32.026 hybrid contribution 1.255 0.331 -0.181 1.310 sum 9.702 -30.525 -1.682 32.074 Atomic orbital electron populations 1.69969 1.06036 1.26576 1.50889 1.25050 0.94858 0.99224 0.95510 0.86663 0.79557 0.83253 0.78524 1.20309 1.21343 1.20299 1.21253 0.92936 0.91223 1.50440 0.92818 1.19095 0.94076 0.91265 0.97308 1.21648 0.99065 0.94042 1.00032 1.21444 0.97031 0.92713 1.02922 1.21790 1.00076 0.92123 1.03899 1.21093 0.88447 0.85626 0.75053 1.90703 1.14284 1.87735 1.48603 1.46104 1.10206 1.05709 1.77052 1.21363 0.94356 0.82265 1.02184 1.21308 0.97276 0.93565 0.99117 0.89563 1.21617 0.98046 0.98490 0.97166 1.21436 0.97982 0.93933 1.01920 1.22264 0.99944 0.98359 0.98542 1.21769 0.90268 0.97764 0.85499 0.92761 1.86543 1.47719 1.53144 1.49406 1.21522 0.96805 0.93008 1.02989 0.93015 0.96601 0.96589 0.93499 0.93508 0.91855 0.91831 0.89208 0.89233 0.76714 0.91736 0.91675 0.91826 0.91700 0.92078 0.91284 0.91864 0.91003 0.77824 0.90316 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.33 5.15 -26.74 -0.14 -2.47 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.14 -1.93 5.70 -27.89 -0.16 -2.08 16 13 C 0.51 7.44 7.83 -10.99 -0.09 7.35 16 14 O -0.54 -10.22 15.98 5.55 0.09 -10.13 16 15 N -0.74 -7.80 5.28 -60.29 -0.32 -8.12 16 16 C 0.12 1.20 5.06 -4.04 -0.02 1.18 16 17 C -0.09 -0.69 2.08 -90.62 -0.19 -0.87 16 18 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 19 C -0.12 -0.75 5.08 -26.73 -0.14 -0.89 16 20 C -0.12 -0.64 5.78 -26.73 -0.15 -0.80 16 21 C -0.15 -0.72 5.64 -26.73 -0.15 -0.87 16 22 C 0.11 0.58 3.77 -26.71 -0.10 0.48 16 23 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 24 O -0.56 -3.54 11.97 -35.23 -0.42 -3.96 16 25 C -0.11 -0.69 4.95 -26.71 -0.13 -0.82 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 3.14 7.66 -40.82 -0.31 2.83 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.42 7.18 -51.93 -0.37 0.05 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.42 7.68 -51.93 -0.40 0.02 16 42 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 0.96 9.08 45.56 0.41 1.38 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -35.10 366.13 -9.15 -44.25 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.79 Total: -2.13 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.94 Total: -15.45 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.42 Total: -35.25 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.33 Total: -14.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.10 -9.15 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588459407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.082 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds