Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46778 * 239.99544 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00140 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00054 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47194 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47278 * 55.00524 * 17 16 15 19 19 C 1.53000 * 109.47260 * 295.00383 * 17 16 15 20 20 C 1.53005 * 109.47167 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47140 * 59.99719 * 20 19 17 22 22 C 1.53005 * 109.47165 * 299.99864 * 21 20 19 23 23 H 1.09001 * 109.46919 * 300.00465 * 22 21 20 24 24 O 1.42897 * 109.47038 * 180.02562 * 22 21 20 25 25 C 1.53002 * 109.46921 * 175.00179 * 17 16 15 26 26 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 34 34 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 35 35 H 0.97005 * 119.99680 * 359.97438 * 15 13 12 36 36 H 1.08998 * 109.47245 * 300.00495 * 16 15 13 37 37 H 1.09002 * 109.47021 * 59.99873 * 16 15 13 38 38 H 1.09000 * 109.47102 * 299.99700 * 19 17 16 39 39 H 1.08993 * 109.47427 * 60.00127 * 19 17 16 40 40 H 1.08994 * 109.46972 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.46692 * 299.99739 * 20 19 17 42 42 H 1.09000 * 109.46863 * 60.00110 * 21 20 19 43 43 H 1.08996 * 109.46657 * 180.02562 * 21 20 19 44 44 H 0.96692 * 114.00065 * 59.99731 * 24 22 21 45 45 H 1.08994 * 109.47359 * 299.99952 * 25 17 16 46 46 H 1.09000 * 109.47312 * 60.00379 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5084 -7.4551 0.0018 15 7 2.3951 -8.6223 0.0029 16 6 1.6626 -9.8910 0.0034 17 6 2.6569 -11.0539 0.0040 18 1 3.3410 -10.9467 0.8458 19 6 3.4517 -11.0459 -1.3033 20 6 4.4456 -12.2092 -1.3031 21 6 3.6843 -13.5304 -1.1771 22 6 2.8895 -13.5384 0.1303 23 1 3.5736 -13.4315 0.9721 24 8 2.1789 -14.7725 0.2482 25 6 1.8960 -12.3753 0.1302 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8894 31 1 0.8534 -5.0451 -0.8886 32 1 0.8541 -5.0445 0.8914 33 1 3.1014 -6.0927 -0.8882 34 1 3.1013 -6.0918 0.8917 35 1 3.3651 -8.6222 0.0032 36 1 1.0356 -9.9482 0.8931 37 1 1.0363 -9.9494 -0.8868 38 1 2.7677 -11.1532 -2.1452 39 1 3.9938 -10.1046 -1.3933 40 1 5.0115 -12.2038 -2.2346 41 1 5.1297 -12.1024 -0.4612 42 1 3.0001 -13.6372 -2.0189 43 1 4.3923 -14.3590 -1.1764 44 1 2.7475 -15.5546 0.2552 45 1 1.3298 -12.3810 1.0615 46 1 1.2119 -12.4826 -0.7116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588459408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = -142.057042 kcal Electronic energy + Delta-G solvation = -21648.970039 eV Core-core repulsion = 18343.257207 eV Total energy + Delta-G solvation = -3305.712833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10563 -39.19724 -36.60623 -34.93838 -34.44432 -32.61714 -31.75122 -30.08709 -29.54167 -26.58511 -25.06786 -22.95435 -22.44319 -21.59304 -20.55510 -20.04000 -19.90778 -17.66240 -16.75257 -16.30448 -16.01089 -15.92452 -15.63738 -15.02763 -14.90733 -14.46067 -14.33065 -14.00400 -13.56581 -13.34655 -13.01368 -12.74289 -12.53604 -12.43975 -12.03474 -11.83341 -11.65378 -11.57568 -11.54221 -11.16398 -11.06447 -10.94763 -10.69288 -10.51901 -10.49628 -10.37975 -10.23154 -9.78064 -9.58322 -9.19384 -9.13372 -8.96480 -8.28129 -5.92975 -3.95554 2.77228 3.09557 3.36607 3.40918 3.43161 3.70924 4.11115 4.16340 4.47970 4.50567 4.56486 4.65536 4.76925 4.85450 4.95792 4.97872 5.03458 5.12988 5.33106 5.35580 5.40996 5.42635 5.47576 5.50658 5.60196 5.64535 5.66700 5.70238 5.80756 5.90270 5.96740 6.17149 6.32962 6.35840 6.58101 6.87232 7.05360 7.17228 7.22872 7.46288 7.76258 7.92865 8.08570 8.30636 8.50207 9.11970 9.67811 11.18286 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.052900 B = 0.002024 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.176230 B =13828.034800 C =14185.537533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.535 6.535 15 N -0.738 5.738 16 C 0.124 3.876 17 C -0.095 4.095 18 H 0.079 0.921 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.153 4.153 22 C 0.106 3.894 23 H 0.055 0.945 24 O -0.569 6.569 25 C -0.106 4.106 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.377 0.623 45 H 0.073 0.927 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 -30.362 -0.997 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.411 6.411 15 N -0.392 5.392 16 C 0.000 4.000 17 C -0.114 4.114 18 H 0.098 0.902 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.191 4.191 22 C 0.047 3.953 23 H 0.073 0.927 24 O -0.374 6.374 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.224 0.776 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.419 -29.827 -0.988 31.294 hybrid contribution 1.483 0.501 -0.043 1.566 sum 10.902 -29.326 -1.030 31.303 Atomic orbital electron populations 1.69967 1.06032 1.26597 1.50854 1.25049 0.94854 0.99219 0.95492 0.86666 0.79561 0.83266 0.78518 1.20311 1.21327 1.20305 1.21249 0.92934 0.91223 1.50491 0.92819 1.19095 0.94075 0.91262 0.97322 1.21648 0.99071 0.94040 1.00031 1.21449 0.97032 0.92710 1.02954 1.21792 1.00080 0.92079 1.03906 1.21101 0.88457 0.85591 0.75043 1.90708 1.14284 1.87690 1.48417 1.46103 1.10172 1.05684 1.77263 1.21300 0.94151 0.81938 1.02591 1.21333 0.97264 0.93824 0.98955 0.90244 1.21668 0.98118 0.98541 0.97334 1.21480 0.97786 0.93932 1.02287 1.22293 0.99529 0.98180 0.99058 1.21771 0.92996 0.84550 0.95948 0.92724 1.86524 1.38258 1.15848 1.96787 1.21411 0.97755 0.91530 1.03687 0.93001 0.96594 0.96581 0.93504 0.93500 0.91821 0.91823 0.89211 0.89194 0.76729 0.91431 0.91435 0.91349 0.91358 0.91437 0.91746 0.91005 0.91819 0.77562 0.90785 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 13 C 0.51 7.14 7.83 -10.98 -0.09 7.05 16 14 O -0.54 -9.95 15.98 5.56 0.09 -9.86 16 15 N -0.74 -7.18 5.28 -60.30 -0.32 -7.50 16 16 C 0.12 1.13 5.06 -4.05 -0.02 1.11 16 17 C -0.09 -0.59 2.23 -90.62 -0.20 -0.79 16 18 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 19 C -0.12 -0.67 5.08 -26.73 -0.14 -0.81 16 20 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 21 C -0.15 -0.76 5.55 -26.73 -0.15 -0.91 16 22 C 0.11 0.63 3.47 -26.75 -0.09 0.54 16 23 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 24 O -0.57 -3.96 13.32 -35.23 -0.47 -4.43 16 25 C -0.11 -0.73 4.85 -26.75 -0.13 -0.86 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 2.69 7.66 -40.82 -0.31 2.38 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.36 7.18 -51.93 -0.37 -0.01 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.38 1.05 9.08 45.56 0.41 1.47 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -35.19 368.19 -9.22 -44.41 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.84 Total: -2.84 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.94 Total: -15.36 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.42 Total: -34.49 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.38 Total: -14.29 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.19 -9.22 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588459408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.647 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds