Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48496 * 109.46690 * 269.99833 * 3 2 1 5 5 H 1.48498 * 109.47171 * 30.00031 * 3 2 1 6 6 H 1.48500 * 109.46632 * 150.00281 * 3 2 1 7 7 C 1.37874 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46991 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47143 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47292 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99818 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99991 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99824 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47125 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47074 * 300.00444 * 17 16 15 19 19 C 1.52997 * 109.47143 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47233 * 60.00194 * 20 19 17 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 H 0.97001 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47046 * 59.99774 * 9 7 2 26 26 H 1.09002 * 109.47152 * 300.00153 * 9 7 2 27 27 H 1.08993 * 109.47839 * 59.99643 * 10 9 7 28 28 H 1.09002 * 109.46719 * 299.99801 * 10 9 7 29 29 H 1.09004 * 109.47261 * 59.99618 * 11 10 9 30 30 H 1.09002 * 109.47153 * 299.99445 * 11 10 9 31 31 H 1.09004 * 109.46930 * 59.99935 * 12 11 10 32 32 H 1.09002 * 109.47067 * 300.00018 * 12 11 10 33 33 H 0.97004 * 120.00071 * 0.02562 * 15 13 12 34 34 H 1.09004 * 109.47041 * 60.00328 * 16 15 13 35 35 H 1.09002 * 109.47391 * 300.00144 * 16 15 13 36 36 H 0.96708 * 114.00310 * 59.99775 * 18 17 16 37 37 H 1.08993 * 109.47194 * 59.99677 * 19 17 16 38 38 H 1.09002 * 109.46695 * 299.99691 * 19 17 16 39 39 H 1.08992 * 109.47063 * 299.99823 * 20 19 17 40 40 H 1.09004 * 109.46733 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 42 42 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 45 45 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 8 0.5082 -7.4551 -0.0018 15 7 2.3949 -8.6224 -0.0029 16 6 1.6624 -9.8911 -0.0023 17 6 2.6566 -11.0540 -0.0031 18 8 3.4773 -10.9783 -1.1704 19 6 1.8916 -12.3790 -0.0031 20 6 2.8859 -13.5419 -0.0032 21 6 3.7655 -13.4610 1.2460 22 6 4.5305 -12.1360 1.2460 23 6 3.5364 -10.9730 1.2461 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8893 28 1 2.8719 -3.6043 -0.8906 29 1 0.8538 -5.0445 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 3.1012 -6.0927 0.8882 32 1 3.1011 -6.0918 -0.8918 33 1 3.3649 -8.6224 -0.0032 34 1 1.0347 -9.9486 -0.8916 35 1 1.0367 -9.9490 0.8884 36 1 3.9923 -10.1625 -1.2369 37 1 1.2645 -12.4365 -0.8928 38 1 1.2654 -12.4369 0.8872 39 1 3.5124 -13.4841 -0.8932 40 1 2.3408 -14.4859 -0.0028 41 1 3.1389 -13.5188 2.1360 42 1 4.4742 -14.2892 1.2456 43 1 5.1576 -12.0784 2.1357 44 1 5.1571 -12.0782 0.3560 45 1 4.0814 -10.0290 1.2457 46 1 2.9098 -11.0308 2.1362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588620583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = -137.020647 kcal Electronic energy + Delta-G solvation = -22135.870540 eV Core-core repulsion = 18830.376101 eV Total energy + Delta-G solvation = -3305.494438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51077 -39.18515 -35.79269 -34.94523 -34.35575 -32.62628 -31.38588 -30.92012 -29.61936 -26.63317 -25.10874 -23.27327 -22.38605 -21.51488 -20.36918 -20.22060 -19.97199 -17.44766 -16.67562 -16.33040 -16.02310 -15.83748 -15.60181 -14.91323 -14.59869 -14.50133 -14.40367 -13.82366 -13.70603 -13.31943 -12.92768 -12.67946 -12.60493 -12.52881 -12.14281 -11.93840 -11.69291 -11.59837 -11.50094 -11.22448 -10.97955 -10.91166 -10.54902 -10.53231 -10.49837 -10.40827 -10.13697 -9.83939 -9.61027 -9.25104 -9.21761 -8.97540 -8.29819 -5.94551 -3.97099 2.69491 3.01080 3.34394 3.40355 3.43500 3.73298 4.14421 4.23735 4.28698 4.49354 4.66850 4.76831 4.79352 4.88954 4.99710 5.07115 5.15855 5.25316 5.30391 5.36239 5.40578 5.41220 5.47619 5.53261 5.60589 5.73210 5.75614 5.81662 5.83206 5.86669 6.05969 6.13731 6.21268 6.30577 6.54766 6.84229 7.02137 7.18717 7.20447 7.33357 7.74818 7.90805 8.06857 8.21674 8.48535 9.10614 9.66448 11.16739 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047999 B = 0.002219 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.204885 B =12613.829144 C =12899.528822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.139 4.139 13 C 0.512 3.488 14 O -0.532 6.532 15 N -0.740 5.740 16 C 0.093 3.907 17 C 0.126 3.874 18 O -0.549 6.549 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.146 4.146 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.372 0.628 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 -28.697 1.735 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.407 6.407 15 N -0.395 5.395 16 C -0.032 4.032 17 C 0.085 3.915 18 O -0.355 6.355 19 C -0.141 4.141 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.184 4.184 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.220 0.780 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.323 -29.164 1.630 30.373 hybrid contribution 1.122 1.541 0.168 1.914 sum 9.445 -27.623 1.798 29.248 Atomic orbital electron populations 1.69979 1.06039 1.26500 1.50934 1.25052 0.94855 0.99248 0.95490 0.86604 0.79806 0.83589 0.78043 1.20708 1.21265 1.19935 1.21280 0.92970 0.91196 1.50380 0.92762 1.19099 0.94071 0.91281 0.97324 1.21647 0.99072 0.93998 1.00053 1.21455 0.97021 0.92705 1.02975 1.21803 1.00119 0.91976 1.03963 1.21117 0.88475 0.85487 0.74913 1.90715 1.14259 1.87607 1.48156 1.46073 1.09912 1.05803 1.77664 1.22040 0.95141 0.82712 1.03274 1.21448 0.89903 0.94753 0.85361 1.86586 1.61167 1.44259 1.43487 1.21469 0.97538 0.92166 1.02974 1.21444 0.97695 0.97316 0.98795 1.21551 0.98722 0.97381 0.98161 1.21454 0.97640 0.94089 1.02127 1.22232 0.98651 0.99149 0.98350 0.93049 0.96579 0.96597 0.93487 0.93476 0.91791 0.91814 0.89164 0.89096 0.77074 0.90691 0.90775 0.78023 0.90868 0.90416 0.90973 0.91999 0.92140 0.92007 0.92033 0.91268 0.91589 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 13 C 0.51 6.94 7.83 -10.98 -0.09 6.86 16 14 O -0.53 -9.68 15.98 5.56 0.09 -9.60 16 15 N -0.74 -6.83 5.03 -60.29 -0.30 -7.14 16 16 C 0.09 0.84 4.81 -4.04 -0.02 0.83 16 17 C 0.13 0.88 0.71 -90.62 -0.06 0.82 16 18 O -0.55 -4.10 11.63 -35.23 -0.41 -4.51 16 19 C -0.10 -0.70 4.94 -26.73 -0.13 -0.83 16 20 C -0.11 -0.72 5.78 -26.73 -0.15 -0.88 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 22 C -0.12 -0.67 5.78 -26.73 -0.15 -0.82 16 23 C -0.15 -0.87 4.74 -26.73 -0.13 -1.00 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.39 2.40 6.39 -40.82 -0.26 2.13 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.37 1.83 7.85 45.56 0.36 2.19 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.43 7.68 -51.93 -0.40 0.03 16 45 H 0.07 0.35 6.86 -51.93 -0.36 -0.01 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -34.37 363.05 -9.08 -43.45 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.78 Total: -2.04 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.86 Total: -15.69 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.43 Total: -34.04 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.32 Total: -14.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.37 -9.08 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588620583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.569 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds