Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00162 * 2 1 4 4 H 1.48500 * 109.47160 * 240.00301 * 3 2 1 5 5 H 1.48493 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47109 * 120.00190 * 3 2 1 7 7 C 1.37879 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00237 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46964 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46964 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47131 * 180.02562 * 12 11 10 14 14 O 1.21292 * 119.99825 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00302 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00198 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47092 * 34.99790 * 16 15 13 18 18 C 1.53005 * 109.47094 * 154.99525 * 16 15 13 19 19 C 1.52999 * 109.47159 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47317 * 300.00546 * 19 18 16 21 21 H 1.09002 * 109.47153 * 299.99641 * 20 19 18 22 22 C 1.53002 * 109.46817 * 179.97438 * 20 19 18 23 23 O 1.42898 * 109.46622 * 174.99979 * 22 20 19 24 24 C 1.53000 * 109.47060 * 59.99960 * 20 19 18 25 25 C 1.52997 * 109.47007 * 274.99841 * 16 15 13 26 26 H 0.96996 * 120.00147 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47104 * 60.00242 * 9 7 2 28 28 H 1.08999 * 109.47169 * 299.99892 * 9 7 2 29 29 H 1.08999 * 109.46882 * 60.00163 * 10 9 7 30 30 H 1.08999 * 109.47053 * 300.00021 * 10 9 7 31 31 H 1.08999 * 109.47144 * 60.00377 * 11 10 9 32 32 H 1.08999 * 109.47297 * 299.99926 * 11 10 9 33 33 H 1.08999 * 109.46882 * 60.00217 * 12 11 10 34 34 H 1.08999 * 109.47053 * 300.00075 * 12 11 10 35 35 H 0.97002 * 119.99692 * 359.97438 * 15 13 12 36 36 H 1.09002 * 109.46935 * 60.00169 * 18 16 15 37 37 H 1.09000 * 109.47360 * 300.00194 * 18 16 15 38 38 H 1.08996 * 109.46929 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.46716 * 60.00455 * 19 18 16 40 40 H 1.09000 * 109.47059 * 294.99790 * 22 20 19 41 41 H 1.08996 * 109.47073 * 54.99883 * 22 20 19 42 42 H 0.96707 * 114.00049 * 179.97438 * 23 22 20 43 43 H 1.08992 * 109.47399 * 59.99823 * 24 20 19 44 44 H 1.09004 * 109.46724 * 180.02562 * 24 20 19 45 45 H 1.09002 * 109.46695 * 299.99637 * 25 16 15 46 46 H 1.08993 * 109.47194 * 59.99623 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 8 0.5081 -7.4551 -0.0018 15 7 2.3948 -8.6224 -0.0018 16 6 1.6623 -9.8911 -0.0024 17 1 0.7518 -9.7847 -0.5921 18 6 2.5397 -10.9863 -0.6121 19 6 1.7749 -12.3115 -0.6121 20 6 1.4110 -12.6903 0.8249 21 1 2.3216 -12.7965 1.4144 22 6 0.6456 -14.0152 0.8247 23 8 0.4074 -14.4277 2.1719 24 6 0.5335 -11.5951 1.4344 25 6 1.2979 -10.2702 1.4344 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8726 -3.6048 0.8877 30 1 2.8712 -3.6040 -0.8923 31 1 0.8526 -5.0447 -0.8905 32 1 0.8546 -5.0450 0.8895 33 1 3.1018 -6.0923 0.8877 34 1 3.1005 -6.0924 -0.8923 35 1 3.3648 -8.6224 -0.0022 36 1 3.4502 -11.0927 -0.0223 37 1 2.7993 -10.7162 -1.6356 38 1 2.3998 -13.0915 -1.0468 39 1 0.8643 -12.2053 -1.2016 40 1 -0.3067 -13.8845 0.3109 41 1 1.2345 -14.7748 0.3107 42 1 -0.0751 -15.2623 2.2482 43 1 -0.3770 -11.4890 0.8449 44 1 0.2747 -11.8649 2.4583 45 1 2.2084 -10.3766 2.0240 46 1 0.6729 -9.4900 1.8686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588653770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = -140.806577 kcal Electronic energy + Delta-G solvation = -21828.014774 eV Core-core repulsion = 18522.356166 eV Total energy + Delta-G solvation = -3305.658609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18031 -38.77794 -36.84250 -34.88403 -34.24592 -32.59357 -31.13502 -30.83023 -29.39307 -26.10628 -24.97330 -23.12596 -22.47298 -21.29634 -20.47780 -19.98494 -19.83400 -17.72899 -16.82261 -16.45572 -16.07116 -15.74340 -15.39831 -15.14707 -14.57519 -14.44153 -14.04606 -13.89976 -13.69891 -13.28096 -12.83989 -12.63011 -12.51255 -12.34972 -12.10254 -11.64284 -11.56802 -11.52667 -11.47906 -10.97392 -10.94210 -10.75489 -10.61694 -10.51132 -10.48409 -10.36949 -10.29407 -9.71293 -9.57384 -9.17987 -9.07188 -8.95450 -8.27613 -5.92451 -3.94971 2.79217 3.15220 3.37116 3.41350 3.43690 3.74907 4.26996 4.42310 4.51077 4.55557 4.63321 4.90114 4.92681 4.94927 5.07776 5.13304 5.18380 5.23949 5.24268 5.37688 5.41657 5.43062 5.44289 5.57305 5.68862 5.75877 5.81132 5.92859 5.98363 6.07354 6.13691 6.18523 6.35141 6.45453 6.59696 6.88370 7.06440 7.19892 7.23792 7.51588 7.76894 7.93584 8.09160 8.34358 8.50898 9.12559 9.68360 11.18831 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.053434 B = 0.002103 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.886056 B =13312.064508 C =13551.308586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.512 3.488 14 O -0.535 6.535 15 N -0.736 5.736 16 C 0.144 3.856 17 H 0.086 0.914 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.089 4.089 21 H 0.078 0.922 22 C 0.079 3.921 23 O -0.573 6.573 24 C -0.107 4.107 25 C -0.130 4.130 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.378 0.622 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -31.004 -0.054 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.411 6.411 15 N -0.388 5.388 16 C 0.039 3.961 17 H 0.104 0.896 18 C -0.162 4.162 19 C -0.147 4.147 20 C -0.108 4.108 21 H 0.096 0.904 22 C 0.001 3.999 23 O -0.378 6.378 24 C -0.145 4.145 25 C -0.169 4.169 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.958 -30.303 0.061 30.706 hybrid contribution 0.665 0.383 -0.147 0.781 sum 5.623 -29.920 -0.086 30.444 Atomic orbital electron populations 1.69965 1.06034 1.26592 1.50875 1.25048 0.94853 0.99218 0.95496 0.86665 0.79563 0.83263 0.78524 1.20304 1.21330 1.20306 1.21252 0.92939 0.91226 1.50467 0.92816 1.19095 0.94070 0.91264 0.97304 1.21652 0.99071 0.94055 1.00027 1.21444 0.97023 0.92714 1.02911 1.21797 1.00082 0.92146 1.03890 1.21099 0.88488 0.85630 0.74826 1.90703 1.14235 1.87667 1.48502 1.46185 1.10084 1.05597 1.76968 1.20945 0.95924 0.82558 0.96666 0.89553 1.21769 0.98697 0.94244 1.01475 1.21453 1.00678 0.96732 0.95853 1.21200 0.99279 0.93505 0.96788 0.90376 1.22243 0.98604 0.95789 0.83225 1.86492 1.79890 1.44431 1.26995 1.21470 0.98017 0.93276 1.01745 1.21927 1.00722 0.97554 0.96653 0.93006 0.96603 0.96593 0.93511 0.93505 0.91848 0.91851 0.89221 0.89236 0.76820 0.91301 0.91026 0.91336 0.91359 0.93568 0.93771 0.77520 0.91906 0.90979 0.91896 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.25 7.79 -10.99 -0.09 7.16 16 14 O -0.54 -9.90 15.65 5.55 0.09 -9.81 16 15 N -0.74 -7.47 5.08 -53.80 -0.27 -7.75 16 16 C 0.14 1.38 2.45 -67.93 -0.17 1.21 16 17 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 18 C -0.12 -0.82 5.39 -26.73 -0.14 -0.96 16 19 C -0.11 -0.64 5.20 -26.73 -0.14 -0.78 16 20 C -0.09 -0.62 2.43 -90.62 -0.22 -0.84 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 22 C 0.08 0.48 6.43 37.16 0.24 0.72 16 23 O -0.57 -4.09 13.19 -35.23 -0.46 -4.56 16 24 C -0.11 -0.93 5.10 -26.75 -0.14 -1.07 16 25 C -0.13 -1.28 5.49 -26.75 -0.15 -1.42 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.40 2.87 8.60 -40.82 -0.35 2.52 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.38 1.04 9.12 45.56 0.42 1.45 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.69 7.82 -51.93 -0.41 0.29 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -35.22 368.89 -9.03 -44.25 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.88 Total: -1.62 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.77 Total: -16.10 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.46 Total: -34.82 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.38 Total: -14.37 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.22 -9.03 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588653770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.559 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds