Wall clock time and date at job start Tue Mar 31 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47261 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47183 * 299.99930 * 3 2 1 6 6 H 1.48502 * 109.47232 * 59.99984 * 3 2 1 7 7 C 1.37882 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46865 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46814 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46814 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47385 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99431 * 359.97438 * 13 12 11 15 15 N 1.34766 * 120.00319 * 179.97438 * 13 12 11 16 16 C 1.46924 * 120.63242 * 0.02562 * 15 13 12 17 17 C 1.53191 * 108.77817 * 126.37005 * 16 15 13 18 18 C 1.53042 * 109.31021 * 54.63576 * 17 16 15 19 19 C 1.53035 * 109.54021 * 298.63480 * 18 17 16 20 20 H 1.09001 * 109.49969 * 301.41757 * 19 18 17 21 21 C 1.52998 * 109.50087 * 181.31694 * 19 18 17 22 22 C 1.52998 * 109.47072 * 65.15999 * 21 19 18 23 23 O 1.42900 * 109.47222 * 180.02562 * 22 21 19 24 24 C 1.46929 * 120.63348 * 180.02562 * 15 13 12 25 25 H 0.96997 * 119.99870 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47909 * 59.99808 * 9 7 2 27 27 H 1.09003 * 109.47499 * 299.99223 * 9 7 2 28 28 H 1.08998 * 109.47327 * 59.99972 * 10 9 7 29 29 H 1.08996 * 109.47077 * 299.99554 * 10 9 7 30 30 H 1.08998 * 109.47105 * 59.99948 * 11 10 9 31 31 H 1.09001 * 109.47122 * 299.99215 * 11 10 9 32 32 H 1.09003 * 109.47570 * 59.99401 * 12 11 10 33 33 H 1.09005 * 109.47339 * 299.99640 * 12 11 10 34 34 H 1.08999 * 109.58511 * 6.58326 * 16 15 13 35 35 H 1.09005 * 109.70744 * 246.22870 * 16 15 13 36 36 H 1.09006 * 109.49784 * 294.68835 * 17 16 15 37 37 H 1.09001 * 109.50459 * 174.58802 * 17 16 15 38 38 H 1.09004 * 109.46156 * 178.61474 * 18 17 16 39 39 H 1.09003 * 109.44815 * 58.65469 * 18 17 16 40 40 H 1.08998 * 109.47755 * 185.16694 * 21 19 18 41 41 H 1.09010 * 109.47060 * 305.16707 * 21 19 18 42 42 H 1.08993 * 109.47500 * 300.00465 * 22 21 19 43 43 H 1.08997 * 109.46790 * 60.00716 * 22 21 19 44 44 H 0.96695 * 114.00418 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.59209 * 113.83860 * 24 15 13 46 46 H 1.09003 * 109.58217 * 353.41142 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0005 13 6 1.7213 -7.4551 0.0005 14 8 0.5084 -7.4551 0.0015 15 7 2.3951 -8.6222 -0.0005 16 6 3.8643 -8.6384 -0.0011 17 6 4.3484 -9.5046 1.1660 18 6 3.7045 -10.8897 1.0693 19 6 2.1832 -10.7548 1.1664 20 1 1.9199 -10.2749 2.1090 21 6 1.5423 -12.1426 1.1027 22 6 1.9527 -12.9510 2.3352 23 8 1.3546 -14.2474 2.2754 24 6 1.6746 -9.9027 -0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5572 -0.8896 27 1 0.6242 -2.5568 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0450 -0.8885 31 1 0.8541 -5.0446 0.8915 32 1 3.1021 -6.0922 0.8900 33 1 3.1007 -6.0924 -0.8900 34 1 4.2409 -7.6224 0.1172 35 1 4.2269 -9.0555 -0.9407 36 1 4.0646 -9.0366 2.1087 37 1 5.4329 -9.6037 1.1203 38 1 4.0663 -11.5161 1.8848 39 1 3.9685 -11.3469 0.1157 40 1 0.4573 -12.0412 1.0794 41 1 1.8785 -12.6571 0.2024 42 1 3.0376 -13.0525 2.3585 43 1 1.6165 -12.4366 3.2354 44 1 1.5717 -14.8158 3.0270 45 1 1.8567 -10.4242 -0.9408 46 1 0.6064 -9.7209 0.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588657585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:31 Heat of formation + Delta-G solvation = -127.688922 kcal Electronic energy + Delta-G solvation = -22130.269633 eV Core-core repulsion = 18825.179849 eV Total energy + Delta-G solvation = -3305.089784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39254 -38.31326 -37.03851 -34.90501 -34.26194 -32.59440 -32.16013 -30.05393 -28.69248 -26.19339 -25.22093 -23.70618 -22.48290 -21.89298 -20.46178 -19.98784 -18.88259 -17.81978 -16.95326 -16.19671 -16.00409 -15.82257 -15.71294 -15.07239 -14.45362 -14.43336 -14.33656 -14.07627 -13.71337 -13.37851 -13.15738 -12.68705 -12.44573 -12.25406 -12.07277 -11.85158 -11.64414 -11.56634 -11.44212 -11.09768 -11.05506 -10.98202 -10.76003 -10.51801 -10.46769 -10.37526 -10.31781 -9.71927 -9.59329 -9.20035 -8.95262 -8.76146 -8.29411 -5.93950 -3.96352 2.71044 2.87256 3.33862 3.40966 3.44909 3.76880 4.22933 4.41313 4.47418 4.49822 4.61006 4.68721 4.79250 4.89377 4.97092 5.09293 5.13177 5.14760 5.31031 5.34072 5.39811 5.41608 5.43947 5.47300 5.50424 5.63942 5.64456 5.75225 5.82745 5.92050 6.01259 6.16050 6.30213 6.39570 6.57862 6.86397 7.03940 7.18316 7.21700 7.33801 7.76133 7.92113 8.07783 8.24367 8.49548 9.11663 9.67182 11.17401 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.002348 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.781494 B =11921.265891 C =12267.016510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.515 3.485 14 O -0.535 6.535 15 N -0.620 5.620 16 C 0.106 3.894 17 C -0.137 4.137 18 C -0.117 4.117 19 C -0.099 4.099 20 H 0.077 0.923 21 C -0.114 4.114 22 C 0.075 3.925 23 O -0.577 6.577 24 C 0.117 3.883 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.379 0.621 45 H 0.065 0.935 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -27.742 3.503 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.411 6.411 15 N -0.355 5.355 16 C -0.018 4.018 17 C -0.175 4.175 18 C -0.155 4.155 19 C -0.119 4.119 20 H 0.095 0.905 21 C -0.152 4.152 22 C -0.003 4.003 23 O -0.382 6.382 24 C -0.006 4.006 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.107 -27.352 2.931 28.977 hybrid contribution 0.811 0.683 0.582 1.210 sum 9.918 -26.668 3.514 28.669 Atomic orbital electron populations 1.69988 1.06038 1.26375 1.51048 1.25055 0.94852 0.99253 0.95516 0.86553 0.80064 0.83935 0.77530 1.19791 1.21063 1.21072 1.21321 0.93010 0.91190 1.50209 0.92703 1.19103 0.94078 0.91288 0.97326 1.21647 0.99062 0.94014 1.00018 1.21464 0.97032 0.92709 1.02944 1.21819 1.00101 0.92069 1.03715 1.21117 0.88213 0.85409 0.74848 1.90695 1.14187 1.87215 1.49017 1.48176 1.06728 1.05837 1.74768 1.21753 0.79704 1.01718 0.98584 1.21938 1.00508 0.95855 0.99182 1.21659 0.94487 0.96977 1.02348 1.21471 0.95569 0.94914 0.99931 0.90469 1.21471 1.01726 0.93973 0.98016 1.22240 0.96348 0.83527 0.98146 1.86474 1.75490 1.26304 1.49937 1.21542 0.98334 0.83373 0.97351 0.93111 0.96583 0.96588 0.93520 0.93493 0.91814 0.91839 0.89220 0.89208 0.89132 0.91364 0.91276 0.90515 0.91580 0.91547 0.90788 0.90952 0.93421 0.93643 0.77403 0.91667 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.88 4.05 -27.88 -0.11 -2.00 16 13 C 0.51 7.52 7.70 -10.99 -0.08 7.44 16 14 O -0.54 -10.05 15.39 5.55 0.09 -9.97 16 15 N -0.62 -6.80 2.97 -172.75 -0.51 -7.32 16 16 C 0.11 0.81 6.34 -3.71 -0.02 0.79 16 17 C -0.14 -0.85 6.08 -26.61 -0.16 -1.01 16 18 C -0.12 -0.71 4.96 -26.69 -0.13 -0.84 16 19 C -0.10 -0.76 2.34 -90.49 -0.21 -0.97 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.11 -0.84 5.05 -26.73 -0.14 -0.97 16 22 C 0.08 0.49 6.81 37.16 0.25 0.74 16 23 O -0.58 -4.33 13.66 -35.23 -0.48 -4.81 16 24 C 0.12 1.16 5.72 -3.69 -0.02 1.13 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 33 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 34 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.34 6.51 -51.93 -0.34 0.00 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.05 0.25 6.54 -51.93 -0.34 -0.09 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.38 1.12 9.12 45.56 0.42 1.54 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.13 7.00 -51.93 -0.36 0.76 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -35.25 363.25 -8.78 -44.03 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.62 Total: -3.78 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.44 Total: -13.64 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.22 Total: -34.30 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.40 Total: -14.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.25 -8.78 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588657585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.661 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds