Wall clock time and date at job start Tue Mar 31 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48503 * 109.47015 * 269.99882 * 3 2 1 5 5 H 1.48501 * 109.47099 * 29.99819 * 3 2 1 6 6 H 1.48501 * 109.47107 * 150.00073 * 3 2 1 7 7 C 1.37872 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47345 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47007 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46730 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00337 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99583 * 180.02562 * 13 12 11 16 16 C 1.46922 * 120.63168 * 359.97438 * 15 13 12 17 17 C 1.53196 * 108.77606 * 233.58995 * 16 15 13 18 18 C 1.53037 * 109.31040 * 305.36550 * 17 16 15 19 19 C 1.53039 * 109.54101 * 61.36876 * 18 17 16 20 20 H 1.08993 * 109.52527 * 58.59948 * 19 18 17 21 21 C 1.52998 * 109.50028 * 178.68208 * 19 18 17 22 22 C 1.52997 * 109.47087 * 294.83623 * 21 19 18 23 23 O 1.42904 * 109.47110 * 179.97438 * 22 21 19 24 24 C 1.46931 * 120.62785 * 179.97438 * 15 13 12 25 25 H 0.97001 * 119.99831 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46891 * 59.99678 * 9 7 2 27 27 H 1.08996 * 109.47115 * 300.00098 * 9 7 2 28 28 H 1.09001 * 109.47377 * 60.00609 * 10 9 7 29 29 H 1.09003 * 109.47450 * 299.99919 * 10 9 7 30 30 H 1.09006 * 109.46500 * 60.00624 * 11 10 9 31 31 H 1.08996 * 109.47352 * 300.00269 * 11 10 9 32 32 H 1.08998 * 109.46527 * 60.00457 * 12 11 10 33 33 H 1.08996 * 109.47353 * 300.00353 * 12 11 10 34 34 H 1.08999 * 109.58543 * 113.80083 * 16 15 13 35 35 H 1.08996 * 109.58946 * 353.37614 * 16 15 13 36 36 H 1.08999 * 109.50112 * 65.32084 * 17 16 15 37 37 H 1.09004 * 109.49641 * 185.41325 * 17 16 15 38 38 H 1.09000 * 109.46060 * 181.39134 * 18 17 16 39 39 H 1.09006 * 109.46385 * 301.34352 * 18 17 16 40 40 H 1.09005 * 109.46854 * 54.83289 * 21 19 18 41 41 H 1.08996 * 109.47107 * 174.83015 * 21 19 18 42 42 H 1.08996 * 109.47119 * 299.99851 * 22 21 19 43 43 H 1.09000 * 109.46972 * 59.99967 * 22 21 19 44 44 H 0.96698 * 114.00041 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.57916 * 246.19424 * 24 15 13 46 46 H 1.08992 * 109.58752 * 6.47629 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4802 -4.9871 0.0033 12 6 2.4746 -6.1501 0.0024 13 6 1.7210 -7.4551 0.0036 14 8 0.5082 -7.4551 0.0045 15 7 2.3949 -8.6223 0.0036 16 6 3.8641 -8.6385 0.0019 17 6 4.3463 -9.5055 -1.1654 18 6 3.7026 -10.8904 -1.0668 19 6 2.1811 -10.7557 -1.1617 20 1 1.9159 -10.2768 -2.1042 21 6 1.5404 -12.1435 -1.0960 22 6 1.9488 -12.9526 -2.3286 23 8 1.3508 -14.2490 -2.2670 24 6 1.6743 -9.9028 0.0053 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 2.8726 -3.6040 0.8910 29 1 2.8713 -3.6047 -0.8891 30 1 0.8527 -5.0455 -0.8861 31 1 0.8546 -5.0442 0.8939 32 1 3.1024 -6.0918 0.8915 33 1 3.0999 -6.0928 -0.8885 34 1 4.2259 -9.0563 0.9413 35 1 4.2406 -7.6226 -0.1177 36 1 4.0613 -9.0381 -2.1079 37 1 5.4309 -9.6045 -1.1213 38 1 4.0632 -11.5174 -1.8823 39 1 3.9679 -11.3473 -0.1133 40 1 1.8780 -12.6573 -0.1959 41 1 0.4554 -12.0419 -1.0711 42 1 1.6113 -12.4388 -3.2287 43 1 3.0338 -13.0541 -2.3534 44 1 1.5673 -14.8182 -3.0182 45 1 1.8575 -10.4238 0.9450 46 1 0.6058 -9.7209 -0.1095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588657589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:34 Heat of formation + Delta-G solvation = -127.649181 kcal Electronic energy + Delta-G solvation = -22130.137556 eV Core-core repulsion = 18825.049495 eV Total energy + Delta-G solvation = -3305.088061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39344 -38.31468 -37.03865 -34.90458 -34.26269 -32.59358 -32.16042 -30.05387 -28.69305 -26.19228 -25.22020 -23.70568 -22.48321 -21.89222 -20.46237 -19.98673 -18.88189 -17.81971 -16.95324 -16.19357 -16.00265 -15.82224 -15.71254 -15.07280 -14.45437 -14.43504 -14.33687 -14.07626 -13.71381 -13.37908 -13.15771 -12.68459 -12.44469 -12.25279 -12.07246 -11.85162 -11.64387 -11.56616 -11.44284 -11.09752 -11.05605 -10.96816 -10.76012 -10.51694 -10.48677 -10.37186 -10.31797 -9.71916 -9.59031 -9.19974 -8.96169 -8.76077 -8.28964 -5.93639 -3.96138 2.71079 2.87283 3.34869 3.40830 3.44043 3.76884 4.22958 4.41300 4.47476 4.49932 4.61015 4.68679 4.79238 4.89439 4.97070 5.09354 5.13141 5.14800 5.31018 5.34111 5.39890 5.41809 5.43908 5.47198 5.50478 5.63932 5.64595 5.75268 5.82772 5.92073 6.01272 6.16069 6.30227 6.39598 6.57873 6.86409 7.03955 7.18270 7.21758 7.33821 7.75950 7.92236 8.07944 8.24387 8.49632 9.11582 9.67337 11.17668 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.002348 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.679223 B =11921.803817 C =12267.643699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.515 3.485 14 O -0.535 6.535 15 N -0.620 5.620 16 C 0.106 3.894 17 C -0.137 4.137 18 C -0.117 4.117 19 C -0.099 4.099 20 H 0.077 0.923 21 C -0.114 4.114 22 C 0.075 3.925 23 O -0.577 6.577 24 C 0.117 3.883 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.379 0.621 45 H 0.065 0.935 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.142 -27.732 -3.498 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.411 6.411 15 N -0.355 5.355 16 C -0.017 4.017 17 C -0.175 4.175 18 C -0.155 4.155 19 C -0.119 4.119 20 H 0.095 0.905 21 C -0.152 4.152 22 C -0.003 4.003 23 O -0.382 6.382 24 C -0.006 4.006 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.085 -27.340 -2.919 28.957 hybrid contribution 0.823 0.678 -0.595 1.221 sum 9.908 -26.661 -3.514 28.659 Atomic orbital electron populations 1.69977 1.06038 1.26482 1.50951 1.25049 0.94854 0.99237 0.95508 0.86608 0.79812 0.83609 0.78025 1.20727 1.21265 1.19936 1.21283 0.92966 0.91201 1.50346 0.92766 1.19097 0.94073 0.91272 0.97321 1.21647 0.99064 0.94014 1.00014 1.21466 0.97032 0.92710 1.02944 1.21817 1.00102 0.92070 1.03715 1.21118 0.88211 0.85409 0.74848 1.90693 1.14191 1.87212 1.49009 1.48183 1.06733 1.05835 1.74778 1.21760 0.79706 1.01706 0.98578 1.21937 1.00517 0.95851 0.99181 1.21658 0.94479 0.96977 1.02351 1.21456 0.95573 0.94909 0.99934 0.90472 1.21470 1.01733 0.93968 0.98016 1.22241 0.96351 0.83527 0.98142 1.86476 1.75525 1.26266 1.49938 1.21525 0.98341 0.83377 0.97356 0.93058 0.96606 0.96574 0.93499 0.93517 0.91848 0.91806 0.89200 0.89225 0.91367 0.89116 0.91274 0.90514 0.91579 0.91545 0.90952 0.90788 0.93640 0.93421 0.77403 0.91694 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.89 4.50 -26.72 -0.12 -2.01 16 12 C -0.14 -1.89 4.05 -27.88 -0.11 -2.00 16 13 C 0.51 7.53 7.70 -10.98 -0.08 7.44 16 14 O -0.54 -10.05 15.39 5.56 0.09 -9.97 16 15 N -0.62 -6.81 2.97 -172.79 -0.51 -7.32 16 16 C 0.11 0.81 6.34 -3.71 -0.02 0.79 16 17 C -0.14 -0.85 6.08 -26.61 -0.16 -1.01 16 18 C -0.12 -0.71 4.96 -26.69 -0.13 -0.84 16 19 C -0.10 -0.76 2.34 -90.51 -0.21 -0.97 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.11 -0.84 5.05 -26.73 -0.14 -0.97 16 22 C 0.07 0.49 6.81 37.16 0.25 0.74 16 23 O -0.58 -4.33 13.66 -35.23 -0.48 -4.81 16 24 C 0.12 1.16 5.72 -3.72 -0.02 1.13 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 33 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.34 6.51 -51.93 -0.34 0.00 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.25 6.54 -51.93 -0.34 -0.09 16 44 H 0.38 1.12 9.12 45.56 0.42 1.54 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.13 7.00 -51.93 -0.36 0.76 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -35.22 363.25 -8.78 -44.00 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -7.62 Total: -3.75 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.44 Total: -13.64 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.22 Total: -34.30 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.40 Total: -14.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.22 -8.78 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588657589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.651 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds