Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99786 * 2 1 4 4 C 1.52999 * 109.44599 * 60.03687 * 3 2 1 5 5 C 1.53046 * 109.45736 * 179.97438 * 3 2 1 6 6 C 1.53190 * 109.31163 * 58.66125 * 5 3 2 7 7 N 1.46923 * 108.77967 * 54.62886 * 6 5 3 8 8 C 1.34777 * 120.63207 * 126.36881 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.46927 * 118.73975 * 306.64960 * 7 6 5 23 23 C 1.52761 * 109.00942 * 53.30086 * 22 7 6 24 24 H 1.08998 * 109.47455 * 300.00058 * 1 2 3 25 25 H 1.08999 * 109.47224 * 60.00444 * 1 2 3 26 26 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46910 * 179.97438 * 4 3 2 28 28 H 1.09006 * 109.47174 * 299.96025 * 4 3 2 29 29 H 1.08993 * 109.47782 * 59.96367 * 4 3 2 30 30 H 1.08995 * 109.50003 * 298.70768 * 5 3 2 31 31 H 1.09003 * 109.51897 * 178.62428 * 5 3 2 32 32 H 1.09006 * 109.58235 * 294.84312 * 6 5 3 33 33 H 1.09000 * 109.58420 * 174.42128 * 6 5 3 34 34 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 35 35 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 41 41 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 42 42 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.58981 * 173.14234 * 22 7 6 44 44 H 1.09000 * 109.58271 * 293.56598 * 22 7 6 45 45 H 1.09004 * 109.56405 * 185.55408 * 23 22 7 46 46 H 1.09009 * 109.38299 * 65.52227 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5590 2.0639 1.2499 5 6 3.5358 1.1844 0.0006 6 6 3.9818 0.3945 -1.2338 7 7 3.4280 1.0383 -2.4328 8 6 4.2321 1.3961 -3.4535 9 8 5.4250 1.1869 -3.3878 10 6 3.6491 2.0561 -4.6764 11 6 4.7676 2.3564 -5.6762 12 6 4.1757 3.0271 -6.9174 13 6 5.2942 3.3267 -7.9175 14 6 4.7112 3.9868 -9.1404 15 1 3.6489 4.1734 -9.1987 16 6 5.5336 4.3523 -10.1848 17 7 6.8271 4.1255 -10.1136 18 14 4.8110 5.1711 -11.7004 19 1 4.1445 6.4388 -11.3078 20 1 5.8965 5.4619 -12.6710 21 1 3.8173 4.2629 -12.3272 22 6 1.9819 1.2903 -2.4953 23 6 1.5575 2.0651 -1.2490 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0025 3.0596 1.2505 28 1 0.4724 2.1503 1.2501 29 1 1.8806 1.5223 2.1394 30 1 3.8591 0.6638 0.9020 31 1 3.9802 2.1794 -0.0240 32 1 3.6132 -0.6291 -1.1654 33 1 5.0703 0.3900 -1.2911 34 1 3.1592 2.9863 -4.3885 35 1 2.9202 1.3891 -5.1366 36 1 5.2571 1.4260 -5.9640 37 1 5.4967 3.0234 -5.2161 38 1 3.4463 2.3605 -7.3777 39 1 3.6865 3.9575 -6.6293 40 1 6.0238 3.9932 -7.4576 41 1 5.7831 2.3961 -8.2056 42 1 7.4058 4.3830 -10.8482 43 1 1.7512 1.8767 -3.3846 44 1 1.4469 0.3413 -2.5319 45 1 0.4728 2.1714 -1.2370 46 1 2.0197 3.0523 -1.2619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588667147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = -107.900962 kcal Electronic energy + Delta-G solvation = -22744.058467 eV Core-core repulsion = 19439.826753 eV Total energy + Delta-G solvation = -3304.231714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70025 -39.07977 -36.15107 -34.87818 -33.19678 -32.58201 -31.57761 -29.77830 -28.61636 -27.19928 -25.64729 -23.75954 -23.47202 -21.97129 -20.46172 -19.95775 -19.00347 -17.11650 -16.30104 -16.15490 -15.90133 -15.87754 -15.75200 -15.46769 -14.63924 -14.43271 -13.88996 -13.75471 -13.49320 -13.43565 -13.04654 -12.75401 -12.51314 -12.39156 -12.23089 -12.05235 -11.74266 -11.63378 -11.57198 -11.43490 -11.22595 -10.94675 -10.62724 -10.51141 -10.48897 -10.36252 -9.92679 -9.67078 -9.57645 -9.18627 -8.96045 -8.70162 -8.27956 -5.92865 -3.95412 2.75817 2.94614 3.36619 3.37800 3.40964 3.43177 4.22054 4.28596 4.44402 4.50498 4.65725 4.76462 4.92970 4.93868 4.99573 5.09531 5.13996 5.17100 5.25146 5.30871 5.35397 5.37849 5.40539 5.42490 5.44600 5.59776 5.66569 5.70409 5.74740 5.90026 5.95078 6.17680 6.32736 6.44576 6.59766 6.84500 6.87918 7.05560 7.23105 7.39572 7.76530 7.93326 8.08857 8.28886 8.50467 9.12170 9.67979 11.18481 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.002623 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.703542 B =10673.465452 C =11081.254045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.114 3.886 4 C -0.178 4.178 5 C -0.118 4.118 6 C 0.114 3.886 7 N -0.618 5.618 8 C 0.514 3.486 9 O -0.536 6.536 10 C -0.138 4.138 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.113 3.887 23 C -0.162 4.162 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -6.678 24.609 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.293 6.293 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.156 4.156 6 C -0.008 4.008 7 N -0.353 5.353 8 C 0.304 3.696 9 O -0.412 6.412 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.011 4.011 23 C -0.201 4.201 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.881 -6.937 24.529 29.026 hybrid contribution -0.769 0.741 -0.760 1.311 sum -14.650 -6.196 23.769 28.601 Atomic orbital electron populations 1.22792 0.81633 1.02668 1.00175 1.87979 1.19368 1.27065 1.94932 1.21466 0.93956 0.83382 0.93704 1.22408 1.01856 1.01101 0.98127 1.21929 0.92504 1.02016 0.99167 1.21462 1.00267 0.96059 0.83027 1.48162 1.07686 1.61305 1.18138 1.21090 0.86577 0.77756 0.84193 1.90690 1.15428 1.54657 1.80464 1.21814 1.01094 1.01022 0.93807 1.21460 0.96124 1.01646 0.94906 1.21645 0.99948 0.98417 0.94726 1.19090 0.93144 0.96771 0.92698 1.21252 0.93848 1.39059 1.01733 0.92829 1.25044 0.94862 0.96112 0.98557 1.69970 1.03316 1.47800 1.32403 0.86672 0.78617 0.79926 0.82838 1.20301 1.21323 1.20294 1.21525 0.80879 1.00387 0.98273 1.22473 1.01957 1.00297 0.95335 0.93878 0.93710 0.89760 0.91337 0.92070 0.91606 0.90029 0.90119 0.90975 0.88988 0.89313 0.89257 0.91794 0.91841 0.93516 0.93544 0.96600 0.96587 0.92997 0.89210 0.91063 0.90247 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.21 101.05 1.03 1.17 16 2 O -0.37 -3.13 9.08 -35.23 -0.32 -3.45 16 3 C 0.11 0.85 0.71 -90.58 -0.06 0.79 16 4 C -0.18 -1.06 8.25 37.16 0.31 -0.75 16 5 C -0.12 -0.99 5.11 -26.61 -0.14 -1.13 16 6 C 0.11 1.23 6.20 -3.71 -0.02 1.21 16 7 N -0.62 -7.20 2.98 -173.03 -0.52 -7.71 16 8 C 0.51 7.71 7.70 -10.99 -0.08 7.62 16 9 O -0.54 -10.20 15.40 5.55 0.09 -10.12 16 10 C -0.14 -1.93 4.05 -27.89 -0.11 -2.04 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.11 0.97 6.08 -3.93 -0.02 0.95 16 23 C -0.16 -1.15 4.46 -26.84 -0.12 -1.27 16 24 H 0.04 0.21 6.42 -51.93 -0.33 -0.12 16 25 H 0.04 0.23 6.44 -51.93 -0.33 -0.11 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.32 6.54 -51.93 -0.34 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.77 7.81 -51.93 -0.41 0.37 16 33 H 0.09 1.14 7.01 -51.93 -0.36 0.77 16 34 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 35 H 0.09 1.10 7.95 -51.93 -0.41 0.69 16 36 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.09 0.70 5.93 -51.93 -0.31 0.39 16 44 H 0.07 0.60 7.81 -51.93 -0.41 0.19 16 45 H 0.08 0.44 6.61 -51.93 -0.34 0.10 16 46 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -34.10 357.43 -7.94 -42.04 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -8.26 Total: -4.66 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.03 Total: -11.46 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.22 Total: -34.77 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.23 Total: -13.57 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.10 -7.94 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588667147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.865 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds