Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.45140 * 2 1 4 4 O 1.42894 * 109.47143 * 60.03318 * 3 2 1 5 5 C 1.53041 * 109.45762 * 240.03560 * 2 1 3 6 6 C 1.53198 * 109.31177 * 301.34609 * 5 2 1 7 7 N 1.46923 * 108.77299 * 305.36422 * 6 5 2 8 8 C 1.34777 * 120.63207 * 233.58527 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47282 * 89.99593 * 18 16 14 20 20 H 1.48498 * 109.47211 * 210.00040 * 18 16 14 21 21 H 1.48506 * 109.46856 * 330.00220 * 18 16 14 22 22 C 1.46927 * 118.73975 * 53.86605 * 7 6 5 23 23 C 1.53036 * 109.45951 * 119.96694 * 2 1 3 24 24 H 1.08997 * 109.47315 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46571 * 299.96717 * 1 2 3 26 26 H 1.09003 * 109.46958 * 59.96171 * 1 2 3 27 27 H 1.08999 * 109.47397 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46971 * 300.03485 * 3 2 1 29 29 H 0.96699 * 114.00562 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.49924 * 181.39346 * 5 2 1 31 31 H 1.09001 * 109.50257 * 61.29544 * 5 2 1 32 32 H 1.08998 * 109.58424 * 185.58284 * 6 5 2 33 33 H 1.09001 * 109.58418 * 65.15025 * 6 5 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 35 35 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 41 41 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 42 42 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.59036 * 65.91893 * 22 7 6 44 44 H 1.09001 * 109.58801 * 186.35057 * 22 7 6 45 45 H 1.08998 * 109.49507 * 178.60306 * 23 2 1 46 46 H 1.09002 * 109.49891 * 298.70200 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0395 1.4427 0.0000 4 8 1.5636 2.1159 1.1671 5 6 2.0398 -0.7207 -1.2501 6 6 1.4995 -2.1542 -1.2643 7 7 1.8625 -2.8089 -0.0001 8 6 2.5155 -3.9878 -0.0001 9 8 2.8095 -4.5182 -1.0505 10 6 2.8804 -4.6472 1.3049 11 6 3.6099 -5.9627 1.0254 12 6 3.9798 -6.6323 2.3504 13 6 4.7098 -7.9475 2.0708 14 6 5.0747 -8.6068 3.3758 15 1 4.8126 -8.1347 4.3112 16 6 5.7432 -9.8126 3.3758 17 7 6.0620 -10.3877 2.2368 18 14 6.1950 -10.6303 4.9935 19 1 5.0901 -11.5258 5.4211 20 1 7.4365 -11.4255 4.8165 21 1 6.4172 -9.5893 6.0291 22 6 1.4945 -2.1570 1.2642 23 6 2.0399 -0.7207 1.2500 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5134 0.8903 26 1 -0.3633 0.5144 -0.8897 27 1 3.1295 1.4431 -0.0005 28 1 1.6755 1.9566 -0.8897 29 1 1.8490 3.0374 1.2335 30 1 3.1295 -0.7428 -1.2384 31 1 1.6958 -0.1935 -2.1399 32 1 1.9381 -2.7018 -2.0984 33 1 0.4145 -2.1346 -1.3673 34 1 1.9742 -4.8481 1.8764 35 1 3.5312 -3.9856 1.8767 36 1 4.5161 -5.7613 0.4541 37 1 2.9594 -6.6243 0.4534 38 1 4.6301 -5.9708 2.9227 39 1 3.0734 -6.8336 2.9212 40 1 4.0598 -8.6093 1.4983 41 1 5.6163 -7.7457 1.5001 42 1 6.5320 -11.2363 2.2369 43 1 0.4092 -2.1376 1.3631 44 1 1.9299 -2.7064 2.0989 45 1 3.1296 -0.7428 1.2382 46 1 1.6958 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588679339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -119.830009 kcal Electronic energy + Delta-G solvation = -22592.472368 eV Core-core repulsion = 19287.723372 eV Total energy + Delta-G solvation = -3304.748996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62495 -38.74306 -36.62577 -34.88321 -33.92719 -32.62745 -31.47966 -29.68981 -28.09885 -27.23555 -25.60344 -23.67155 -23.40013 -21.94937 -20.06594 -19.72370 -18.22514 -17.74235 -16.97462 -16.15525 -15.87897 -15.81220 -15.38837 -15.07980 -14.64626 -14.55103 -14.40047 -13.71108 -13.48851 -13.34395 -12.84454 -12.71912 -12.43744 -12.26767 -12.08981 -11.88744 -11.62262 -11.58699 -11.43017 -11.05489 -10.95754 -10.86859 -10.70728 -10.50266 -10.47206 -10.37931 -10.31905 -9.68504 -9.57421 -9.18347 -8.94906 -8.70070 -8.27912 -5.92751 -3.95134 2.74757 2.93718 3.35765 3.41648 3.44978 3.75878 4.27041 4.32235 4.50663 4.54522 4.70036 4.79715 4.89605 4.98474 5.05091 5.07031 5.18733 5.28028 5.33519 5.36844 5.39851 5.42637 5.47981 5.59719 5.64236 5.68575 5.71781 5.76789 5.90871 5.94631 6.11755 6.18140 6.33224 6.44095 6.60066 6.88276 7.05767 7.20319 7.23461 7.37477 7.77106 7.93521 8.09045 8.27567 8.50845 9.12657 9.68341 11.18632 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.002584 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.284692 B =10831.378464 C =11329.318191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C 0.086 3.914 4 O -0.569 6.569 5 C -0.124 4.124 6 C 0.112 3.888 7 N -0.619 5.619 8 C 0.515 3.485 9 O -0.537 6.537 10 C -0.138 4.138 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.104 3.896 23 C -0.120 4.120 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.378 0.622 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 27.220 -4.799 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C 0.008 3.992 4 O -0.375 6.375 5 C -0.162 4.162 6 C -0.011 4.011 7 N -0.355 5.355 8 C 0.304 3.696 9 O -0.413 6.413 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.019 4.019 23 C -0.158 4.158 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.224 0.776 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.761 26.173 -5.335 29.185 hybrid contribution 0.557 0.186 0.732 0.938 sum -11.204 26.359 -4.603 29.009 Atomic orbital electron populations 1.21901 0.93814 1.01958 1.02221 1.20553 0.96662 0.93008 0.95747 1.22209 0.97159 0.92510 0.87295 1.86463 1.77534 1.28962 1.44500 1.21934 1.01420 0.95690 0.97178 1.21521 0.99736 0.92237 0.87591 1.48203 1.58533 1.21849 1.06882 1.21106 0.76282 0.79886 0.92298 1.90688 1.53483 1.63196 1.33964 1.21815 1.02365 0.99203 0.94365 1.21458 0.99954 0.93312 0.99390 1.21645 0.99710 0.98991 0.94401 1.19096 0.95243 0.90631 0.96767 1.21289 1.36416 1.05167 0.92904 0.92764 1.25047 0.96062 0.97361 0.96146 1.69982 1.40814 1.17629 1.25084 0.86611 0.77886 0.79483 0.84102 1.20713 1.21268 1.19924 1.21911 1.00319 0.93369 0.86260 1.21980 1.00939 0.94766 0.98144 0.92174 0.91702 0.92930 0.93692 0.93711 0.77564 0.91247 0.90704 0.88880 0.91499 0.89220 0.89233 0.91862 0.91837 0.93520 0.93496 0.96600 0.96603 0.93067 0.91110 0.89160 0.91536 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 7.57 37.16 0.28 -0.70 16 2 C -0.06 -0.43 0.60 -154.47 -0.09 -0.52 16 3 C 0.09 0.53 5.91 37.16 0.22 0.75 16 4 O -0.57 -3.69 12.28 -35.23 -0.43 -4.13 16 5 C -0.12 -0.95 4.91 -26.61 -0.13 -1.08 16 6 C 0.11 1.10 5.96 -3.71 -0.02 1.08 16 7 N -0.62 -6.98 2.97 -172.49 -0.51 -7.49 16 8 C 0.51 7.64 7.70 -10.99 -0.08 7.55 16 9 O -0.54 -10.13 15.40 5.55 0.09 -10.04 16 10 C -0.14 -1.94 4.05 -27.89 -0.11 -2.05 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.10 0.90 5.90 -3.48 -0.02 0.88 16 23 C -0.12 -0.95 4.79 -26.38 -0.13 -1.08 16 24 H 0.06 0.43 4.97 -51.93 -0.26 0.17 16 25 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.38 0.92 9.12 45.56 0.42 1.34 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 33 H 0.07 0.58 6.69 -51.93 -0.35 0.23 16 34 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 35 H 0.09 1.11 7.70 -51.93 -0.40 0.71 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 44 H 0.09 0.73 5.93 -51.93 -0.31 0.43 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.66 7.64 -51.93 -0.40 0.27 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -34.81 356.40 -8.10 -42.91 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.43 Total: -3.40 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.90 Total: -13.21 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.22 Total: -34.58 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.35 Total: -14.17 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.81 -8.10 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588679339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.922 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds