Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47190 * 269.99948 * 3 2 1 5 5 H 1.48501 * 109.46999 * 30.00475 * 3 2 1 6 6 H 1.48509 * 109.46934 * 150.00200 * 3 2 1 7 7 C 1.37874 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00021 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47029 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47009 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00292 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99769 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99920 * 179.97438 * 15 13 12 17 17 H 1.09004 * 110.01447 * 34.30608 * 16 15 13 18 18 C 1.54259 * 110.03291 * 272.90920 * 16 15 13 19 19 C 1.54969 * 104.16166 * 217.13428 * 18 16 15 20 20 C 1.54886 * 102.77453 * 37.89064 * 19 18 16 21 21 C 1.53876 * 110.03056 * 155.69092 * 16 15 13 22 22 H 1.08994 * 110.03177 * 238.56948 * 21 16 15 23 23 C 1.53000 * 110.03214 * 0.02562 * 21 16 15 24 24 C 1.53003 * 109.46985 * 184.99983 * 23 21 16 25 25 O 1.42899 * 109.47277 * 179.97438 * 24 23 21 26 26 H 0.97000 * 119.99664 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46913 * 60.00145 * 9 7 2 28 28 H 1.09005 * 109.46862 * 300.00220 * 9 7 2 29 29 H 1.08992 * 109.47027 * 59.99991 * 10 9 7 30 30 H 1.08999 * 109.46672 * 300.00347 * 10 9 7 31 31 H 1.09001 * 109.47331 * 59.99699 * 11 10 9 32 32 H 1.08995 * 109.46909 * 299.99558 * 11 10 9 33 33 H 1.09001 * 109.47310 * 59.99686 * 12 11 10 34 34 H 1.09008 * 109.46788 * 299.99875 * 12 11 10 35 35 H 0.96994 * 120.00259 * 0.02562 * 15 13 12 36 36 H 1.09000 * 110.49275 * 335.78884 * 18 16 15 37 37 H 1.09004 * 110.48351 * 98.43011 * 18 16 15 38 38 H 1.09001 * 110.71997 * 279.57670 * 19 18 16 39 39 H 1.08996 * 110.92230 * 156.29994 * 19 18 16 40 40 H 1.08997 * 110.48591 * 203.40612 * 20 19 18 41 41 H 1.09006 * 110.59823 * 80.81497 * 20 19 18 42 42 H 1.09006 * 109.46910 * 304.99029 * 23 21 16 43 43 H 1.08992 * 109.47721 * 64.99743 * 23 21 16 44 44 H 1.08996 * 109.46931 * 299.99620 * 24 23 21 45 45 H 1.08997 * 109.47454 * 59.99642 * 24 23 21 46 46 H 0.96693 * 113.99925 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 6 6.0615 -4.0791 -0.0028 13 6 7.5685 -4.0791 -0.0033 14 8 8.1749 -3.0288 -0.0029 15 7 8.2424 -5.2463 -0.0033 16 6 9.7074 -5.2463 -0.0045 17 1 10.0809 -4.4000 0.5721 18 6 10.2347 -5.1734 -1.4523 19 6 11.4900 -6.0821 -1.4448 20 6 11.0645 -7.2464 -0.5162 21 6 10.2349 -6.5635 0.5908 22 1 10.8652 -6.3565 1.4556 23 6 9.0643 -7.4610 0.9969 24 6 9.5994 -8.7104 1.6995 25 8 8.5060 -9.5485 2.0794 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8746 -0.6800 -0.8912 29 1 3.6579 -3.1498 -0.8924 30 1 3.6585 -3.1510 0.8875 31 1 5.9149 -2.1234 0.8882 32 1 5.9148 -2.1221 -0.8918 33 1 5.6982 -4.5926 -0.8929 34 1 5.6981 -4.5932 0.8871 35 1 7.7574 -6.0863 -0.0033 36 1 9.4900 -5.5575 -2.1494 37 1 10.5058 -4.1491 -1.7084 38 1 12.3477 -5.5516 -1.0311 39 1 11.7113 -6.4485 -2.4472 40 1 11.9410 -7.7343 -0.0900 41 1 10.4543 -7.9674 -1.0602 42 1 8.4071 -6.9164 1.6749 43 1 8.5063 -7.7550 0.1080 44 1 10.2565 -9.2551 1.0217 45 1 10.1573 -8.4165 2.5886 46 1 8.7717 -10.3612 2.5308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588691032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = -149.835128 kcal Electronic energy + Delta-G solvation = -22165.236299 eV Core-core repulsion = 18859.186183 eV Total energy + Delta-G solvation = -3306.050116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28452 -39.42933 -37.57452 -36.65783 -34.72609 -34.56501 -33.04131 -31.91085 -28.98141 -27.81325 -27.14713 -23.90084 -23.75579 -21.86499 -21.64673 -21.31474 -20.17642 -18.85715 -18.38605 -18.00831 -16.97289 -16.84144 -16.53049 -16.31988 -15.95639 -15.66899 -15.33329 -14.98122 -14.74741 -14.37750 -14.19390 -13.89225 -13.75775 -13.51932 -13.08906 -12.96543 -12.83573 -12.62967 -12.34125 -12.08476 -11.97332 -11.76664 -11.76193 -11.74206 -11.58307 -11.52097 -11.49468 -11.35573 -11.26950 -10.81117 -10.76986 -10.76195 -10.02785 -8.30205 -6.33350 1.34346 1.35776 1.48911 1.66455 2.23618 2.35587 3.05110 3.24585 3.53343 3.62369 3.85855 4.00759 4.05839 4.13364 4.16300 4.26111 4.43730 4.47330 4.49214 4.59186 4.62215 4.63777 4.65270 4.74248 4.76295 4.79097 4.85270 4.97272 5.05559 5.12925 5.13722 5.18826 5.20515 5.22715 5.27441 5.30955 5.45879 5.57737 5.62343 5.64845 5.68225 6.29086 6.55515 6.74522 6.93434 7.28845 7.31511 8.86497 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024840 B = 0.002676 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.944794 B =10459.076172 C =11302.489524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.016 4.016 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.134 4.134 13 C 0.511 3.489 14 O -0.585 6.585 15 N -0.717 5.717 16 C 0.140 3.860 17 H 0.068 0.932 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.086 4.086 22 H 0.091 0.909 23 C -0.120 4.120 24 C 0.076 3.924 25 O -0.599 6.599 26 H 0.266 0.734 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.414 0.586 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.086 -21.864 0.762 35.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.174 4.174 13 C 0.299 3.701 14 O -0.465 6.465 15 N -0.372 5.372 16 C 0.035 3.965 17 H 0.086 0.914 18 C -0.174 4.174 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.105 4.105 22 H 0.109 0.891 23 C -0.158 4.158 24 C -0.001 4.001 25 O -0.408 6.408 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 28.030 -20.557 0.500 34.764 hybrid contribution -0.263 0.363 0.253 0.515 sum 27.767 -20.195 0.753 34.342 Atomic orbital electron populations 1.70062 1.08128 1.28104 1.52876 1.25999 0.95630 1.03417 0.94252 0.85684 0.79369 0.78566 0.79207 1.19173 1.20645 1.17641 1.21547 0.92108 0.93234 1.50016 0.94512 1.19573 0.93903 0.95820 0.96085 1.21343 0.93748 0.96788 1.01296 1.21264 0.94773 0.95639 1.01735 1.21697 0.90175 0.99178 1.06321 1.21147 0.91059 0.83535 0.74382 1.90673 1.71410 1.33157 1.51260 1.46363 1.07284 1.08679 1.74852 1.21669 0.79441 0.98565 0.96829 0.91416 1.22777 0.98661 1.00010 0.95993 1.22460 0.96461 0.96074 1.00712 1.22482 0.99879 0.97296 0.95480 1.21913 0.96649 0.92622 0.99366 0.89101 1.21593 0.98094 0.95244 1.00876 1.22217 0.88407 0.91107 0.98375 1.86434 1.35699 1.37684 1.80991 0.92486 0.96799 0.96893 0.92472 0.92543 0.93054 0.92944 0.86820 0.86929 0.74618 0.91346 0.93081 0.90918 0.90335 0.89524 0.90630 0.91802 0.90720 0.91876 0.93007 0.75319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 46.62 27.47 68.60 1.88 48.50 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.25 -11.85 6.54 99.48 0.65 -11.19 16 7 C -0.53 -31.86 9.66 25.60 0.25 -31.61 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.02 -0.82 4.04 29.85 0.12 -0.69 16 10 C -0.09 -3.74 5.15 30.59 0.16 -3.59 16 11 C -0.10 -3.25 4.50 30.59 0.14 -3.12 16 12 C -0.13 -3.32 5.70 29.85 0.17 -3.15 16 13 C 0.51 13.60 7.82 87.66 0.69 14.29 16 14 O -0.58 -20.92 15.65 -3.03 -0.05 -20.97 16 15 N -0.72 -13.51 4.41 -439.10 -1.93 -15.44 16 16 C 0.14 2.42 3.21 45.71 0.15 2.57 16 17 H 0.07 1.52 7.59 -2.38 -0.02 1.50 16 18 C -0.14 -2.24 6.54 31.69 0.21 -2.03 16 19 C -0.12 -1.24 6.91 31.91 0.22 -1.02 16 20 C -0.11 -0.87 5.53 31.67 0.18 -0.70 16 21 C -0.09 -0.92 2.93 -10.07 -0.03 -0.95 16 22 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 23 C -0.12 -1.33 3.57 30.60 0.11 -1.22 16 24 C 0.08 0.69 6.90 71.98 0.50 1.18 16 25 O -0.60 -7.37 13.66 -148.98 -2.04 -9.41 16 26 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 28 H 0.01 0.63 7.57 -2.38 -0.02 0.61 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.41 5.81 5.87 -92.71 -0.54 5.26 16 36 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.08 0.54 7.76 -2.38 -0.02 0.53 16 42 H 0.06 0.90 7.41 -2.38 -0.02 0.88 16 43 H 0.07 0.81 7.11 -2.39 -0.02 0.79 16 44 H 0.06 0.36 7.51 -2.39 -0.02 0.35 16 45 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.40 1.39 9.12 -74.06 -0.68 0.72 16 Total: -1.00 -77.84 362.94 1.15 -76.69 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -0.33 Total: 10.95 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.31 Total: -29.34 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.64 Total: -76.42 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -2.08 Total: -30.38 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.50 kcal Total: -77.84 1.15 -76.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588691032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.150 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds