Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47632 * 300.00714 * 3 2 1 6 6 H 1.48511 * 109.47039 * 60.00468 * 3 2 1 7 7 C 1.37877 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47159 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 12 17 17 H 1.09007 * 110.01811 * 325.70616 * 16 15 13 18 18 C 1.54272 * 110.03228 * 87.09444 * 16 15 13 19 19 C 1.54882 * 104.19701 * 142.89449 * 18 16 15 20 20 C 1.54886 * 102.75057 * 322.06210 * 19 18 16 21 21 C 1.53876 * 110.03671 * 204.31055 * 16 15 13 22 22 H 1.08998 * 110.02962 * 121.42684 * 21 16 15 23 23 C 1.52996 * 110.02901 * 0.02562 * 21 16 15 24 24 C 1.53000 * 109.47157 * 174.99726 * 23 21 16 25 25 O 1.42898 * 109.47538 * 179.97438 * 24 23 21 26 26 H 0.96995 * 120.00587 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47277 * 59.99958 * 9 7 2 28 28 H 1.09002 * 109.46506 * 299.99678 * 9 7 2 29 29 H 1.08998 * 109.47269 * 60.00054 * 10 9 7 30 30 H 1.09003 * 109.46642 * 299.99381 * 10 9 7 31 31 H 1.09004 * 109.47131 * 59.99670 * 11 10 9 32 32 H 1.09000 * 109.47504 * 299.99974 * 11 10 9 33 33 H 1.09004 * 109.47066 * 60.00025 * 12 11 10 34 34 H 1.08994 * 109.47405 * 299.99855 * 12 11 10 35 35 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 36 36 H 1.09000 * 110.48697 * 261.57745 * 18 16 15 37 37 H 1.09008 * 110.48287 * 24.08501 * 18 16 15 38 38 H 1.09012 * 110.75492 * 80.37367 * 19 18 16 39 39 H 1.08995 * 110.76081 * 203.55605 * 19 18 16 40 40 H 1.09006 * 110.48839 * 156.62262 * 20 19 18 41 41 H 1.09002 * 110.48388 * 279.12942 * 20 19 18 42 42 H 1.09005 * 109.47103 * 294.99569 * 23 21 16 43 43 H 1.08999 * 109.47676 * 54.99763 * 23 21 16 44 44 H 1.08992 * 109.47275 * 299.99970 * 24 23 21 45 45 H 1.09008 * 109.47324 * 59.99728 * 24 23 21 46 46 H 0.96697 * 114.00559 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1499 -0.0005 13 6 1.7212 -7.4551 0.0007 14 8 0.5084 -7.4551 0.0016 15 7 2.3951 -8.6222 -0.0052 16 6 1.6627 -9.8910 -0.0100 17 1 0.7439 -9.7937 0.5685 18 6 1.3333 -10.3055 -1.4591 19 6 1.4916 -11.8462 -1.4588 20 6 2.7149 -12.0639 -0.5341 21 6 2.5407 -11.0089 0.5792 22 1 2.0478 -11.4545 1.4431 23 6 3.9036 -10.4452 0.9862 24 6 4.7192 -11.5361 1.6830 25 8 5.9924 -11.0099 2.0626 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8898 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.8534 -5.0450 -0.8896 32 1 0.8541 -5.0446 0.8903 33 1 3.1020 -6.0921 0.8890 34 1 3.1006 -6.0923 -0.8909 35 1 3.3651 -8.6223 -0.0061 36 1 0.3103 -10.0271 -1.7123 37 1 2.0358 -9.8479 -2.1558 38 1 0.6044 -12.3256 -1.0448 39 1 1.6937 -12.2140 -2.4647 40 1 2.7003 -13.0690 -0.1124 41 1 3.6420 -11.8945 -1.0818 42 1 4.4360 -10.1048 0.0980 43 1 3.7612 -9.6067 1.6680 44 1 4.1869 -11.8764 2.5711 45 1 4.8617 -12.3746 1.0012 46 1 6.5642 -11.6482 2.5105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588691035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -128.133781 kcal Electronic energy + Delta-G solvation = -22108.320897 eV Core-core repulsion = 18803.211822 eV Total energy + Delta-G solvation = -3305.109075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37598 -38.53062 -37.05406 -34.84279 -33.75930 -32.56111 -32.46846 -29.86882 -27.85614 -27.21723 -25.37438 -23.21719 -22.47355 -21.06939 -20.40664 -19.90565 -19.44843 -17.81718 -17.04830 -16.23029 -16.05283 -15.92377 -15.58135 -15.36372 -14.68316 -14.45667 -14.25947 -13.87223 -13.65267 -13.45458 -12.64824 -12.52594 -12.38629 -12.20000 -11.87094 -11.62773 -11.54190 -11.40354 -11.18750 -11.15877 -11.05076 -10.96267 -10.90702 -10.48675 -10.45069 -10.37350 -10.36158 -9.72828 -9.56686 -9.17295 -9.07045 -8.92905 -8.27607 -5.92223 -3.94497 2.79717 3.17845 3.35388 3.42443 3.46723 3.71564 4.11586 4.19937 4.51693 4.53915 4.65376 4.75344 4.93480 4.97631 5.04657 5.09708 5.17734 5.22906 5.27389 5.34479 5.39789 5.42718 5.45060 5.48839 5.59373 5.66074 5.72291 5.86625 5.93100 5.94946 6.03124 6.19827 6.36412 6.47239 6.61215 6.89622 7.07595 7.19022 7.24936 7.51374 7.78194 7.94400 8.09739 8.35032 8.51695 9.13575 9.69045 11.19218 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.002540 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.151229 B =11021.085106 C =11880.397678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.140 4.140 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.736 5.736 16 C 0.146 3.854 17 H 0.091 0.909 18 C -0.135 4.135 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.096 4.096 22 H 0.083 0.917 23 C -0.120 4.120 24 C 0.077 3.923 25 O -0.575 6.575 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.268 -29.777 0.723 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.180 4.180 13 C 0.299 3.701 14 O -0.412 6.412 15 N -0.391 5.391 16 C 0.040 3.960 17 H 0.109 0.891 18 C -0.174 4.174 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.116 4.116 22 H 0.102 0.898 23 C -0.158 4.158 24 C -0.001 4.001 25 O -0.381 6.381 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.985 -29.098 0.454 30.177 hybrid contribution 1.094 0.382 0.263 1.189 sum 9.079 -28.716 0.717 30.126 Atomic orbital electron populations 1.69985 1.06047 1.26366 1.51132 1.25047 0.94839 0.99236 0.95514 0.86559 0.80094 0.83943 0.77523 1.19777 1.21069 1.21062 1.21333 0.93025 0.91207 1.50129 0.92705 1.19102 0.94075 0.91296 0.97298 1.21650 0.99064 0.94035 1.00056 1.21439 0.97006 0.92714 1.02896 1.21801 1.00100 0.92168 1.03929 1.21122 0.88487 0.85724 0.74805 1.90693 1.14255 1.87716 1.48523 1.46492 1.10429 1.05383 1.76821 1.21548 0.95409 0.82532 0.96474 0.89075 1.22803 1.02566 0.95422 0.96599 1.22458 0.98088 0.95917 0.99748 1.22505 0.98858 0.98252 0.96205 1.21999 0.95111 0.95666 0.98777 0.89850 1.21618 0.94309 0.98796 1.01074 1.22190 0.84189 0.95920 0.97802 1.86489 1.28013 1.42788 1.80763 0.93123 0.96595 0.96600 0.93491 0.93503 0.91861 0.91844 0.89214 0.89231 0.76154 0.90936 0.91093 0.91255 0.91290 0.91455 0.91184 0.90810 0.90316 0.93679 0.93541 0.77344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.29 55.43 0.74 -27.18 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 12 C -0.14 -1.96 5.70 -27.88 -0.16 -2.11 16 13 C 0.51 7.34 7.82 -10.98 -0.09 7.25 16 14 O -0.54 -9.92 15.65 5.55 0.09 -9.84 16 15 N -0.74 -7.70 4.41 -52.71 -0.23 -7.93 16 16 C 0.15 1.38 3.21 -66.81 -0.21 1.16 16 17 H 0.09 1.05 7.59 -51.92 -0.39 0.65 16 18 C -0.14 -1.22 6.53 -25.07 -0.16 -1.38 16 19 C -0.12 -0.81 6.91 -24.74 -0.17 -0.98 16 20 C -0.12 -0.67 5.54 -25.02 -0.14 -0.81 16 21 C -0.10 -0.64 2.93 -89.45 -0.26 -0.90 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 23 C -0.12 -0.82 3.58 -26.73 -0.10 -0.92 16 24 C 0.08 0.46 6.90 37.16 0.26 0.72 16 25 O -0.58 -4.22 13.66 -35.23 -0.48 -4.70 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.35 5.87 -40.82 -0.24 3.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.66 8.05 -51.92 -0.42 0.24 16 38 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.39 7.77 -51.93 -0.40 -0.01 16 42 H 0.07 0.51 7.12 -51.93 -0.37 0.14 16 43 H 0.08 0.64 7.41 -51.93 -0.38 0.26 16 44 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.05 0.22 7.51 -51.92 -0.39 -0.17 16 46 H 0.38 1.10 9.12 45.56 0.42 1.51 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -35.23 366.57 -8.87 -44.10 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.64 Total: -1.06 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.84 Total: -16.10 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.50 Total: -35.11 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.39 Total: -14.54 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.23 -8.87 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588691035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.031 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds