Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.52797 * 2 1 4 4 C 1.53197 * 109.49888 * 239.91885 * 2 1 3 5 5 N 1.46957 * 108.89063 * 185.49515 * 4 2 1 6 6 C 1.34780 * 120.65462 * 233.53473 * 5 4 2 7 7 O 1.21280 * 119.99699 * 359.81776 * 6 5 4 8 8 C 1.50691 * 120.00213 * 179.81159 * 6 5 4 9 9 C 1.53008 * 109.47282 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47124 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46829 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46887 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00473 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99881 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99705 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99771 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47221 * 60.00287 * 16 14 12 18 18 H 1.48499 * 109.46745 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47083 * 300.00013 * 16 14 12 20 20 C 1.46926 * 118.71783 * 53.35357 * 5 4 2 21 21 C 1.53191 * 108.89109 * 306.64359 * 20 5 4 22 22 C 1.53040 * 109.49694 * 120.08227 * 2 1 3 23 23 H 1.08994 * 109.45892 * 61.29609 * 22 2 1 24 24 O 1.42899 * 109.44877 * 301.32536 * 22 2 1 25 25 H 1.09000 * 109.47211 * 299.92504 * 1 2 3 26 26 H 1.09002 * 109.47144 * 59.91633 * 1 2 3 27 27 H 1.08997 * 109.47437 * 179.91724 * 1 2 3 28 28 H 1.08998 * 109.47745 * 180.08297 * 3 2 1 29 29 H 1.09006 * 109.47303 * 300.08013 * 3 2 1 30 30 H 1.08994 * 109.47118 * 60.07851 * 3 2 1 31 31 H 1.09001 * 109.58145 * 305.20506 * 4 2 1 32 32 H 1.08997 * 109.58684 * 65.48028 * 4 2 1 33 33 H 1.08998 * 109.47452 * 300.00605 * 8 6 5 34 34 H 1.09005 * 109.46717 * 60.00766 * 8 6 5 35 35 H 1.09003 * 109.47131 * 300.00278 * 9 8 6 36 36 H 1.08995 * 109.46569 * 60.00639 * 9 8 6 37 37 H 1.09003 * 109.46953 * 299.99908 * 10 9 8 38 38 H 1.08996 * 109.47312 * 60.00033 * 10 9 8 39 39 H 1.09003 * 109.46882 * 299.99466 * 11 10 9 40 40 H 1.08996 * 109.47543 * 59.99689 * 11 10 9 41 41 H 0.97005 * 119.99792 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.58861 * 186.78362 * 20 5 4 43 43 H 1.08996 * 109.58519 * 66.50253 * 20 5 4 44 44 H 1.09003 * 109.49294 * 174.51508 * 21 20 5 45 45 H 1.09001 * 109.49969 * 294.57596 * 21 20 5 46 46 H 0.96706 * 113.99791 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5048 -0.8323 -1.1712 6 6 4.2816 -0.3916 -2.1807 7 8 3.7738 0.0972 -3.1676 8 6 5.7809 -0.5062 -2.0830 9 6 6.4197 0.0623 -3.3518 10 6 7.9420 -0.0546 -3.2528 11 6 8.5806 0.5145 -4.5213 12 6 10.0801 0.3999 -4.4235 13 1 10.5324 -0.0350 -3.5445 14 6 10.8747 0.8502 -5.4565 15 7 10.3240 1.3802 -6.5267 16 14 12.7334 0.7075 -5.3356 17 1 13.1116 -0.7210 -5.1886 18 1 13.3533 1.2600 -6.5668 19 1 13.2127 1.4705 -4.1553 20 6 4.1052 -1.4268 0.0307 21 6 3.5708 -0.6951 1.2659 22 6 2.0407 -0.7231 1.2483 23 1 1.6966 -1.7572 1.2352 24 8 1.5392 -0.0691 2.4157 25 1 -0.3633 0.5127 0.8906 26 1 -0.3633 0.5151 -0.8892 27 1 -0.3634 -1.0276 -0.0015 28 1 3.1314 1.4410 -0.0015 29 1 1.6774 1.9566 -0.8893 30 1 1.6797 1.9557 0.8906 31 1 1.6051 -1.7216 -1.2980 32 1 1.7615 -0.1593 -2.1390 33 1 6.1325 0.0537 -1.2164 34 1 6.0589 -1.5547 -1.9753 35 1 6.0681 -0.4981 -4.2181 36 1 6.1418 1.1107 -3.4599 37 1 8.2938 0.5055 -2.3865 38 1 8.2196 -1.1031 -3.1448 39 1 8.2288 -0.0453 -5.3878 40 1 8.3030 1.5630 -4.6289 41 1 10.8831 1.6967 -7.2536 42 1 5.1896 -1.3248 -0.0138 43 1 3.8397 -2.4824 0.0879 44 1 3.9334 -1.1898 2.1670 45 1 3.9164 0.3386 1.2544 46 1 1.8230 -0.4748 3.2464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588702192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -118.469784 kcal Electronic energy + Delta-G solvation = -22897.583154 eV Core-core repulsion = 19592.893142 eV Total energy + Delta-G solvation = -3304.690013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78746 -38.75300 -36.04511 -34.92515 -34.38592 -32.57581 -31.50063 -29.87092 -27.53465 -27.24162 -25.73051 -24.68930 -22.81218 -22.17397 -20.03170 -19.42948 -18.75661 -17.73801 -16.93860 -16.17911 -15.98099 -15.89341 -15.28303 -14.73797 -14.64145 -14.44221 -13.93356 -13.72674 -13.56558 -13.41444 -12.66080 -12.51134 -12.38679 -12.22624 -12.17328 -11.94624 -11.85754 -11.61639 -11.53457 -11.28980 -11.14821 -10.95991 -10.58384 -10.52230 -10.51368 -10.38971 -10.22791 -9.72185 -9.59641 -9.20643 -8.97642 -8.80515 -8.29084 -5.93932 -3.96544 2.68900 2.84585 3.35901 3.40290 3.42447 3.79026 4.18831 4.27828 4.49530 4.53375 4.63077 4.69223 4.82262 4.96745 4.99392 5.19764 5.25219 5.30507 5.33178 5.38549 5.41064 5.41785 5.52551 5.56672 5.63114 5.72785 5.78661 5.86054 5.90825 6.01224 6.14803 6.16509 6.28631 6.37164 6.56629 6.85399 7.02847 7.20673 7.25489 7.30237 7.75205 7.91715 8.07541 8.22038 8.49154 9.11005 9.66917 11.17394 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.002706 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.817403 B =10345.463914 C =10702.871446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.135 4.135 4 C 0.120 3.880 5 N -0.620 5.620 6 C 0.516 3.484 7 O -0.533 6.533 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.109 3.891 21 C -0.172 4.172 22 C 0.117 3.883 23 H 0.055 0.945 24 O -0.561 6.561 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 -6.806 19.513 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.355 5.355 6 C 0.305 3.695 7 O -0.408 6.408 8 C -0.178 4.178 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.014 4.014 21 C -0.211 4.211 22 C 0.058 3.942 23 H 0.073 0.927 24 O -0.367 6.367 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -19.810 -6.072 18.322 27.658 hybrid contribution 1.370 -0.525 0.563 1.571 sum -18.440 -6.597 18.885 27.206 Atomic orbital electron populations 1.21735 0.93257 1.01825 1.02540 1.20909 0.96456 0.96767 0.92978 1.21792 1.01201 0.94319 1.01933 1.21655 0.79859 1.00357 0.98374 1.48189 1.06425 1.62309 1.18553 1.21098 0.90060 0.76457 0.81853 1.90695 1.75648 1.43714 1.30761 1.21825 0.90192 1.03424 1.02329 1.21464 0.96534 1.01319 0.94830 1.21645 0.91902 1.00186 1.01003 1.19088 0.94733 0.96192 0.91670 1.21250 0.91941 1.39902 1.02845 0.92824 1.25043 0.98621 0.95408 0.95482 1.69967 1.35288 1.41190 1.07029 0.86672 0.85778 0.78317 0.77294 1.20288 1.21314 1.20294 1.21667 0.99293 0.96821 0.83620 1.22744 0.96904 1.02986 0.98451 1.21746 0.91768 0.94961 0.85718 0.92732 1.86531 1.75606 1.58785 1.15740 0.91405 0.92376 0.92804 0.92473 0.92667 0.91938 0.91689 0.88308 0.89242 0.89204 0.91795 0.91811 0.93528 0.93508 0.96597 0.96602 0.92984 0.88803 0.91264 0.90404 0.89958 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.32 37.16 0.31 -0.76 16 2 C -0.07 -0.61 0.60 -154.39 -0.09 -0.70 16 3 C -0.14 -1.38 7.85 37.16 0.29 -1.09 16 4 C 0.12 1.20 5.10 -3.69 -0.02 1.18 16 5 N -0.62 -6.65 2.43 -172.75 -0.42 -7.07 16 6 C 0.52 7.39 7.70 -10.99 -0.08 7.31 16 7 O -0.53 -9.82 15.40 5.56 0.09 -9.74 16 8 C -0.14 -1.87 4.05 -27.88 -0.11 -1.98 16 9 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.11 0.81 6.34 -3.71 -0.02 0.79 16 21 C -0.17 -1.12 5.36 -26.61 -0.14 -1.26 16 22 C 0.12 0.83 2.56 -26.69 -0.07 0.76 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 O -0.56 -3.98 11.98 -35.23 -0.42 -4.41 16 25 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.63 5.98 -51.93 -0.31 0.32 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 1.19 7.02 -51.93 -0.36 0.83 16 33 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 34 H 0.09 1.05 7.94 -51.93 -0.41 0.63 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 42 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.66 6.34 -51.93 -0.33 0.34 16 46 H 0.38 1.17 9.08 45.56 0.41 1.59 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -34.44 358.20 -7.93 -42.38 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.54 Total: -2.91 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.75 Total: -13.65 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.32 Total: -34.04 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.34 Total: -14.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.44 -7.93 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588702192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.092 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds