Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.52576 * 2 1 4 4 C 1.53191 * 109.49833 * 239.91672 * 2 1 3 5 5 N 1.46923 * 108.77952 * 294.68661 * 4 2 1 6 6 C 1.34766 * 120.63480 * 126.41068 * 5 4 2 7 7 O 1.21284 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00405 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47612 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47225 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.46999 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47103 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99869 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99932 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47098 * 89.99829 * 16 14 12 18 18 H 1.48501 * 109.47413 * 210.00178 * 16 14 12 19 19 H 1.48503 * 109.47099 * 330.00377 * 16 14 12 20 20 C 1.46928 * 118.73590 * 306.39182 * 5 4 2 21 21 C 1.53198 * 108.76692 * 53.61195 * 20 5 4 22 22 C 1.53037 * 109.31089 * 305.34614 * 21 20 5 23 23 H 1.08994 * 109.46193 * 301.36940 * 22 21 20 24 24 O 1.42905 * 109.45636 * 181.39556 * 22 21 20 25 25 H 1.08996 * 109.46703 * 299.91747 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.91913 * 1 2 3 27 27 H 1.08999 * 109.46808 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47420 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46977 * 300.08357 * 3 2 1 30 30 H 1.09001 * 109.46708 * 60.07829 * 3 2 1 31 31 H 1.09004 * 109.58492 * 54.47492 * 4 2 1 32 32 H 1.09003 * 109.58532 * 174.89237 * 4 2 1 33 33 H 1.09000 * 109.47282 * 300.00183 * 8 6 5 34 34 H 1.09005 * 109.47146 * 59.99988 * 8 6 5 35 35 H 1.08992 * 109.46925 * 300.00169 * 9 8 6 36 36 H 1.09005 * 109.46763 * 59.99890 * 9 8 6 37 37 H 1.09004 * 109.47062 * 300.00236 * 10 9 8 38 38 H 1.09000 * 109.46955 * 59.99974 * 10 9 8 39 39 H 1.09004 * 109.47218 * 299.99910 * 11 10 9 40 40 H 1.09000 * 109.47477 * 60.00062 * 11 10 9 41 41 H 0.97003 * 120.00135 * 180.02562 * 15 14 12 42 42 H 1.08998 * 109.58613 * 173.39464 * 20 5 4 43 43 H 1.09004 * 109.58771 * 293.67897 * 20 5 4 44 44 H 1.08995 * 109.48704 * 185.40043 * 21 20 5 45 45 H 1.08998 * 109.50451 * 65.30461 * 21 20 5 46 46 H 0.96696 * 114.00036 * 59.97465 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 1.6516 -2.1382 -1.1696 6 6 0.9749 -2.7221 -2.1782 7 8 0.6814 -2.0791 -3.1638 8 6 0.5817 -4.1736 -2.0810 9 6 -0.1711 -4.5842 -3.3482 10 6 -0.5697 -6.0580 -3.2497 11 6 -1.3218 -6.4687 -4.5171 12 6 -1.7139 -7.9206 -4.4204 13 1 -1.4524 -8.4933 -3.5429 14 6 -2.4065 -8.5178 -5.4522 15 7 -2.7491 -9.7848 -5.3676 16 14 -2.8596 -7.5272 -6.9697 17 1 -1.7691 -7.6310 -7.9723 18 1 -4.1184 -8.0592 -7.5506 19 1 -3.0512 -6.1037 -6.5925 20 6 2.0140 -2.9040 0.0308 21 6 1.5028 -2.1556 1.2659 22 6 2.0409 -0.7231 1.2483 23 1 3.1305 -0.7446 1.2352 24 8 1.5924 -0.0318 2.4159 25 1 -0.3632 0.5125 0.8907 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1313 1.4410 -0.0005 29 1 1.6773 1.9566 -0.8892 30 1 1.6797 1.9557 0.8907 31 1 1.6008 -0.2731 -2.1389 32 1 3.1276 -0.6462 -1.2980 33 1 1.4770 -4.7863 -1.9752 34 1 -0.0622 -4.3183 -1.2134 35 1 -1.0663 -3.9715 -3.4535 36 1 0.4724 -4.4394 -4.2160 37 1 0.3259 -6.6704 -3.1446 38 1 -1.2130 -6.2032 -2.3818 39 1 -2.2174 -5.8564 -4.6227 40 1 -0.6782 -6.3236 -5.3848 41 1 -3.2361 -10.2051 -6.0936 42 1 1.5554 -3.8918 -0.0137 43 1 3.0979 -3.0065 0.0855 44 1 1.8476 -2.6628 2.1669 45 1 0.4131 -2.1351 1.2538 46 1 1.8800 -0.4350 3.2464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588702193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = -115.163978 kcal Electronic energy + Delta-G solvation = -22956.359656 eV Core-core repulsion = 19651.812993 eV Total energy + Delta-G solvation = -3304.546662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83932 -38.80473 -36.08689 -35.05941 -34.43365 -32.54410 -31.53761 -30.24756 -27.57334 -27.41936 -25.88872 -24.76107 -22.84405 -21.96083 -20.03913 -19.47035 -18.79705 -17.76800 -17.04718 -16.53077 -16.07738 -15.96399 -15.32083 -14.82044 -14.68181 -14.20633 -13.96923 -13.78791 -13.65312 -13.48286 -12.68665 -12.56160 -12.48753 -12.35562 -12.27823 -12.01039 -11.99111 -11.81027 -11.70548 -11.32942 -11.18782 -11.10262 -10.73184 -10.59926 -10.53173 -10.26644 -9.89948 -9.79033 -9.63824 -9.40570 -9.11120 -8.85642 -8.48648 -5.99955 -3.97384 2.62433 2.79431 3.36048 3.43029 3.49296 3.76332 4.15370 4.24675 4.49983 4.50858 4.59764 4.63358 4.79032 4.93399 4.95848 5.16342 5.18109 5.25885 5.27290 5.32450 5.35193 5.37997 5.48907 5.52004 5.59664 5.69270 5.74531 5.79280 5.86818 5.97914 6.03130 6.12004 6.15250 6.29551 6.43423 6.68937 6.82610 6.99762 7.23130 7.23813 7.39017 7.51847 7.85507 8.15347 8.58936 9.04953 9.63534 11.13560 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035179 B = 0.002870 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.735984 B = 9752.522264 C =10137.871824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.619 5.619 6 C 0.516 3.484 7 O -0.535 6.535 8 C -0.138 4.138 9 C -0.106 4.106 10 C -0.102 4.102 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.109 3.891 21 C -0.172 4.172 22 C 0.117 3.883 23 H 0.055 0.945 24 O -0.561 6.561 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.105 20.623 17.058 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.354 5.354 6 C 0.306 3.694 7 O -0.411 6.411 8 C -0.178 4.178 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.014 4.014 21 C -0.211 4.211 22 C 0.058 3.942 23 H 0.073 0.927 24 O -0.367 6.367 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.572 21.204 15.954 29.363 hybrid contribution 0.067 -0.120 -0.263 0.296 sum 12.640 21.084 15.691 29.164 Atomic orbital electron populations 1.21794 0.93370 1.02151 1.01932 1.20912 0.97376 0.95840 0.92985 1.21737 1.00577 0.94517 1.02540 1.21664 0.99317 0.80881 0.98395 1.48174 1.57472 1.11075 1.18664 1.21074 0.76326 0.90198 0.81839 1.90690 1.53928 1.65562 1.30879 1.21808 1.02299 0.91497 1.02197 1.21493 0.99824 0.97980 0.95130 1.21472 0.99876 0.92440 1.00175 1.19576 0.95262 0.97121 0.93325 1.21186 1.35527 0.94067 1.04925 0.91121 1.25042 0.95389 0.94768 0.98420 1.69924 1.40310 1.11217 1.33125 0.86773 0.77971 0.81174 0.83378 1.20315 1.21464 1.18888 1.21688 1.00406 0.95737 0.83610 1.22742 1.03321 0.96556 0.98461 1.21746 0.96626 0.90117 0.85720 0.92718 1.86528 1.78897 1.55494 1.15746 0.91917 0.92697 0.92474 0.92791 0.92393 0.91391 0.88324 0.91622 0.89033 0.89079 0.91803 0.91794 0.92892 0.92880 0.96621 0.97057 0.92824 0.88760 0.91190 0.90354 0.89945 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.85 37.16 0.29 -1.04 16 2 C -0.07 -0.59 0.60 -154.39 -0.09 -0.68 16 3 C -0.14 -1.03 8.32 37.16 0.31 -0.72 16 4 C 0.12 1.15 5.11 -3.71 -0.02 1.13 16 5 N -0.62 -6.34 2.41 -172.77 -0.42 -6.76 16 6 C 0.52 7.05 7.70 -10.99 -0.08 6.96 16 7 O -0.53 -9.43 15.40 5.55 0.09 -9.34 16 8 C -0.14 -1.77 4.05 -27.88 -0.11 -1.88 16 9 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 12 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 16 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 20 C 0.11 0.77 6.34 -3.71 -0.02 0.75 16 21 C -0.17 -1.07 5.36 -26.61 -0.14 -1.21 16 22 C 0.12 0.79 2.56 -26.69 -0.07 0.72 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 O -0.56 -3.86 11.98 -35.23 -0.42 -4.28 16 25 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.61 5.97 -51.93 -0.31 0.30 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 31 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.01 7.94 -51.93 -0.41 0.59 16 34 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.09 0.62 5.93 -51.93 -0.31 0.31 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.64 6.33 -51.93 -0.33 0.31 16 46 H 0.38 1.10 9.08 45.56 0.41 1.52 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -34.71 354.56 -7.56 -42.27 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.51 Total: -3.13 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.74 Total: -14.19 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.36 Total: -34.47 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.34 Total: -13.62 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.71 -7.56 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588702193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.894 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds