Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 108.44852 * 2 1 4 4 C 1.52572 * 108.51367 * 242.45797 * 2 1 3 5 5 C 1.50881 * 109.36000 * 153.73409 * 4 2 1 6 6 C 1.53944 * 110.09736 * 91.88550 * 5 4 2 7 7 N 1.47604 * 112.14189 * 319.43606 * 6 5 4 8 8 C 1.34773 * 118.64333 * 137.89046 * 7 6 5 9 9 O 1.21286 * 119.99965 * 179.97438 * 8 7 6 10 10 C 1.50694 * 120.00354 * 359.97438 * 8 7 6 11 11 C 1.52995 * 109.47335 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47636 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47704 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99881 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00309 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00039 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46677 * 90.00232 * 18 16 14 20 20 H 1.48502 * 109.47032 * 210.00334 * 18 16 14 21 21 H 1.48499 * 109.47230 * 330.00398 * 18 16 14 22 22 C 1.44582 * 122.71290 * 317.86956 * 7 6 5 23 23 C 1.47092 * 108.51562 * 117.68919 * 2 1 3 24 24 H 1.09002 * 109.47153 * 302.30841 * 1 2 3 25 25 H 1.09001 * 109.46832 * 182.31032 * 1 2 3 26 26 H 1.09004 * 109.47261 * 62.31013 * 1 2 3 27 27 H 0.96700 * 113.99721 * 60.00381 * 3 2 1 28 28 H 1.09001 * 109.49017 * 273.69932 * 4 2 1 29 29 H 1.09005 * 109.49051 * 33.76808 * 4 2 1 30 30 H 1.08999 * 109.36585 * 331.69176 * 5 4 2 31 31 H 1.09001 * 109.26284 * 212.01123 * 5 4 2 32 32 H 1.09003 * 108.94978 * 198.74779 * 6 5 4 33 33 H 1.09004 * 108.87507 * 80.07036 * 6 5 4 34 34 H 1.09001 * 109.46985 * 300.00195 * 10 8 7 35 35 H 1.09000 * 109.47337 * 59.99748 * 10 8 7 36 36 H 1.09001 * 109.46942 * 299.99852 * 11 10 8 37 37 H 1.08997 * 109.47566 * 59.99925 * 11 10 8 38 38 H 1.09001 * 109.46743 * 299.99636 * 12 11 10 39 39 H 1.09000 * 109.47647 * 59.99231 * 12 11 10 40 40 H 1.09001 * 109.46730 * 299.99610 * 13 12 11 41 41 H 1.09000 * 109.47258 * 59.98959 * 13 12 11 42 42 H 0.96997 * 120.00140 * 179.97438 * 17 16 14 43 43 H 1.09006 * 109.44455 * 330.68635 * 22 7 6 44 44 H 1.08998 * 109.42751 * 210.75358 * 22 7 6 45 45 H 1.08998 * 109.32942 * 304.31849 * 23 2 1 46 46 H 1.09005 * 109.32651 * 63.79390 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9822 1.3556 0.0000 4 6 2.0144 -0.6690 -1.2828 5 6 3.3837 -0.1423 -1.6352 6 6 4.4710 -1.0406 -1.0181 7 7 4.1251 -1.4724 0.3503 8 6 4.3637 -2.7509 0.7040 9 8 4.0895 -3.1319 1.8224 10 6 4.9711 -3.7069 -0.2899 11 6 5.1352 -5.0822 0.3600 12 6 5.7525 -6.0527 -0.6490 13 6 5.9160 -7.4283 0.0006 14 6 6.5234 -8.3843 -0.9933 15 1 6.7680 -8.0449 -1.9890 16 6 6.7670 -9.6923 -0.6316 17 7 6.4687 -10.1057 0.5807 18 14 7.5193 -10.8776 -1.8640 19 1 8.9995 -10.8324 -1.7540 20 1 7.0435 -12.2553 -1.5797 21 1 7.1128 -10.4872 -3.2379 22 6 3.5414 -0.5805 1.3271 23 6 1.9971 -0.6481 1.2351 24 1 -0.3633 0.5493 0.8686 25 1 -0.3633 -1.0269 0.0414 26 1 -0.3634 0.4776 -0.9100 27 1 1.6877 1.8684 0.7651 28 1 2.0670 -1.7474 -1.1331 29 1 1.3199 -0.4474 -2.0932 30 1 3.4911 0.8717 -1.2501 31 1 3.4966 -0.1310 -2.7193 32 1 5.4108 -0.4893 -0.9884 33 1 4.5980 -1.9225 -1.6460 34 1 4.3180 -3.7915 -1.1585 35 1 5.9462 -3.3342 -0.6035 36 1 5.7881 -4.9980 1.2288 37 1 4.1599 -5.4548 0.6732 38 1 5.0999 -6.1371 -1.5180 39 1 6.7278 -5.6800 -0.9619 40 1 6.5684 -7.3443 0.8698 41 1 4.9405 -7.8008 0.3132 42 1 6.6397 -11.0260 0.8350 43 1 3.8724 0.4394 1.1307 44 1 3.8589 -0.8791 2.3261 45 1 1.5618 -0.1405 2.0958 46 1 1.6809 -1.6913 1.2368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588725745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = -114.387239 kcal Electronic energy + Delta-G solvation = -23012.332970 eV Core-core repulsion = 19707.819990 eV Total energy + Delta-G solvation = -3304.512980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79161 -38.97095 -35.95646 -34.92074 -33.10436 -32.94345 -32.41424 -30.13818 -28.79664 -26.52850 -25.79641 -24.08455 -22.51075 -21.49183 -20.54431 -19.97616 -18.64619 -17.11578 -16.78699 -16.37432 -16.14361 -16.00855 -15.25012 -15.08866 -14.52999 -14.36974 -13.87148 -13.79068 -13.43316 -13.21568 -12.76951 -12.56825 -12.38900 -12.27300 -12.04678 -11.89592 -11.66846 -11.58052 -11.48820 -11.30634 -10.97250 -10.92674 -10.75899 -10.50881 -10.47529 -10.35333 -10.19091 -9.68120 -9.58141 -9.18718 -8.95440 -8.69666 -8.28630 -5.93385 -3.95837 2.74127 2.98544 3.35247 3.41159 3.44426 3.85148 4.32000 4.44032 4.48599 4.51738 4.67219 4.79863 4.83045 5.02042 5.16705 5.22287 5.25965 5.33521 5.37080 5.39049 5.41862 5.43882 5.50152 5.62118 5.67567 5.78220 5.81474 5.83797 5.92619 5.94533 6.16855 6.18032 6.33736 6.54587 6.63759 6.87444 7.04925 7.22514 7.32881 7.34372 7.76383 7.92743 8.08336 8.29118 8.50181 9.11984 9.67714 11.17997 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.002760 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.168508 B =10143.821951 C =10318.305787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 O -0.561 6.561 4 C -0.100 4.100 5 C -0.134 4.134 6 C 0.106 3.894 7 N -0.612 5.612 8 C 0.507 3.493 9 O -0.535 6.535 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.122 3.878 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.371 0.629 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 25.963 -2.779 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.096 3.904 3 O -0.367 6.367 4 C -0.138 4.138 5 C -0.172 4.172 6 C -0.016 4.016 7 N -0.346 5.346 8 C 0.297 3.703 9 O -0.411 6.411 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.002 4.002 23 C -0.201 4.201 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.218 0.782 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.960 25.424 -2.630 27.432 hybrid contribution 0.006 -0.542 -0.126 0.556 sum -9.954 24.882 -2.756 26.941 Atomic orbital electron populations 1.22664 0.96209 1.02758 1.02338 1.19913 0.92553 0.82565 0.95417 1.86544 1.77415 1.23104 1.49686 1.21086 0.97229 1.00105 0.95356 1.21627 0.93687 1.01299 1.00591 1.22041 0.97680 0.99738 0.82183 1.47804 1.63192 1.10639 1.12995 1.21167 0.77768 0.82256 0.89141 1.90690 1.51871 1.76451 1.22102 1.21841 1.01614 0.96242 0.98189 1.21455 1.02017 0.91590 0.99060 1.21646 0.98710 0.97173 0.97223 1.19092 0.97042 0.89688 0.95891 1.21289 1.40819 0.95044 0.98662 0.92763 1.25042 0.95901 0.98401 0.95238 1.69973 1.48322 1.16855 1.18353 0.86615 0.79430 0.80417 0.81647 1.20711 1.21264 1.19917 1.21243 0.91564 0.94159 0.93227 1.21904 0.97676 1.02820 0.97708 0.92471 0.91641 0.91884 0.78160 0.90801 0.91294 0.89027 0.90811 0.91801 0.89709 0.89276 0.89244 0.91857 0.91907 0.93540 0.93501 0.96613 0.96622 0.93058 0.90134 0.90073 0.90789 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 8.48 37.16 0.32 -0.92 16 2 C 0.14 1.03 0.84 -93.68 -0.08 0.95 16 3 O -0.56 -3.91 9.70 -35.23 -0.34 -4.25 16 4 C -0.10 -0.82 4.83 -28.01 -0.14 -0.96 16 5 C -0.13 -1.02 5.63 -27.30 -0.15 -1.17 16 6 C 0.11 0.90 5.95 -2.95 -0.02 0.88 16 7 N -0.61 -6.77 2.24 -172.54 -0.39 -7.16 16 8 C 0.51 7.37 7.62 -10.99 -0.08 7.29 16 9 O -0.54 -9.88 15.41 5.55 0.09 -9.79 16 10 C -0.14 -1.93 4.03 -27.89 -0.11 -2.04 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 1.22 5.33 -4.09 -0.02 1.20 16 23 C -0.16 -1.42 4.53 -28.59 -0.13 -1.55 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.42 7.96 -51.93 -0.41 0.01 16 27 H 0.37 1.44 8.97 45.56 0.41 1.85 16 28 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 29 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 30 H 0.09 0.76 6.04 -51.93 -0.31 0.45 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.68 5.82 -51.93 -0.30 0.37 16 34 H 0.09 1.07 7.41 -51.93 -0.38 0.69 16 35 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.69 7.24 -51.93 -0.38 0.32 16 44 H 0.08 0.96 7.30 -51.93 -0.38 0.58 16 45 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -33.99 355.53 -8.37 -42.36 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.58 Total: -2.23 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.22 Total: -14.29 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.35 Total: -34.18 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.26 Total: -14.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.99 -8.37 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588725745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.029 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds