Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 C 1.52990 * 109.70953 * 294.96010 * 3 2 1 5 5 C 1.53296 * 109.68005 * 55.49885 * 3 2 1 6 6 O 1.42961 * 109.21958 * 172.02358 * 5 3 2 7 7 C 1.42962 * 114.17167 * 297.41448 * 6 5 3 8 8 C 1.53301 * 109.21771 * 62.58527 * 7 6 5 9 9 N 1.47156 * 108.38249 * 307.69494 * 8 7 6 10 10 C 1.34772 * 120.98136 * 230.55718 * 9 8 7 11 11 O 1.21280 * 119.99732 * 175.22604 * 10 9 8 12 12 C 1.50692 * 120.00398 * 355.22127 * 10 9 8 13 13 C 1.53002 * 109.47455 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47032 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47032 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47475 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99343 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00167 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00453 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47126 * 60.00105 * 20 18 16 22 22 H 1.48500 * 109.47260 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47045 * 300.00118 * 20 18 16 24 24 H 1.08998 * 109.46784 * 300.00220 * 1 2 3 25 25 H 1.09001 * 109.46864 * 59.99590 * 1 2 3 26 26 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47278 * 239.99770 * 2 1 3 28 28 H 1.09001 * 109.46864 * 120.00410 * 2 1 3 29 29 H 1.08996 * 109.47522 * 299.46327 * 4 3 2 30 30 H 1.09007 * 109.47420 * 59.46328 * 4 3 2 31 31 H 1.09001 * 109.47275 * 179.46073 * 4 3 2 32 32 H 1.09000 * 109.51188 * 52.10226 * 5 3 2 33 33 H 1.09003 * 109.51312 * 291.94587 * 5 3 2 34 34 H 1.08994 * 109.51629 * 182.50293 * 7 6 5 35 35 H 1.08995 * 109.51601 * 302.61412 * 7 6 5 36 36 H 1.08996 * 109.68399 * 67.41805 * 8 7 6 37 37 H 1.08999 * 109.67956 * 187.93746 * 8 7 6 38 38 H 1.09002 * 109.47215 * 299.99963 * 12 10 9 39 39 H 1.09004 * 109.46974 * 60.00010 * 12 10 9 40 40 H 1.09002 * 109.46781 * 300.00109 * 13 12 10 41 41 H 1.08991 * 109.46838 * 59.99902 * 13 12 10 42 42 H 1.09002 * 109.47067 * 299.99494 * 14 13 12 43 43 H 1.08996 * 109.47690 * 59.99531 * 14 13 12 44 44 H 1.09002 * 109.46781 * 299.99669 * 15 14 13 45 45 H 1.09004 * 109.47119 * 59.99539 * 15 14 13 46 46 H 0.96990 * 120.00491 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6391 2.1315 -1.3057 5 6 1.4414 2.2017 1.1895 6 8 2.0632 3.4851 1.2898 7 6 3.4688 3.4361 1.5461 8 6 4.1713 2.7401 0.3748 9 7 3.5054 1.4499 0.1347 10 6 4.2166 0.3089 0.0412 11 8 3.6446 -0.7547 -0.0702 12 6 5.7225 0.3547 0.0751 13 6 6.2788 -1.0652 -0.0483 14 6 7.8077 -1.0187 -0.0133 15 6 8.3640 -2.4387 -0.1360 16 6 9.8700 -2.3930 -0.1022 17 1 10.3793 -1.4458 -0.0026 18 6 10.5974 -3.5603 -0.1972 19 7 9.9772 -4.7137 -0.3180 20 14 12.4641 -3.5036 -0.1546 21 1 12.9120 -2.9053 1.1287 22 1 13.0041 -4.8819 -0.2726 23 1 12.9603 -2.6786 -1.2852 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0821 1.6001 -2.1480 30 1 0.5533 2.1240 -1.4020 31 1 1.9960 3.1614 -1.2976 32 1 1.6175 1.6392 2.1064 33 1 0.3691 2.3274 1.0388 34 1 3.8552 4.4498 1.6518 35 1 3.6522 2.8789 2.4647 36 1 4.1001 3.3616 -0.5178 37 1 5.2194 2.5723 0.6227 38 1 6.0863 0.9604 -0.7549 39 1 6.0516 0.7937 1.0170 40 1 5.9150 -1.6713 0.7814 41 1 5.9497 -1.5038 -0.9903 42 1 8.1718 -0.4125 -0.8428 43 1 8.1365 -0.5803 0.9289 44 1 7.9999 -3.0446 0.6937 45 1 8.0353 -2.8776 -1.0781 46 1 10.4890 -5.5349 -0.3845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588759182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = -93.260919 kcal Electronic energy + Delta-G solvation = -23213.266990 eV Core-core repulsion = 19909.670116 eV Total energy + Delta-G solvation = -3303.596874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08016 -38.57286 -36.01214 -34.88458 -34.49970 -32.54721 -30.27015 -29.83141 -28.78822 -26.69973 -25.83963 -24.61461 -22.79315 -22.30708 -20.62055 -19.91416 -18.63041 -16.94839 -16.84474 -16.19572 -16.07470 -15.97361 -15.43623 -15.21305 -14.59176 -14.48222 -14.17145 -13.77527 -13.49799 -13.15594 -13.02014 -12.58117 -12.44911 -12.29578 -12.13850 -11.91702 -11.73469 -11.59281 -11.54487 -11.42256 -10.98320 -10.85482 -10.73974 -10.52264 -10.51728 -10.41066 -10.37836 -9.61425 -9.32967 -9.07302 -8.93898 -8.63269 -8.30307 -5.95122 -3.97863 2.65832 2.69219 3.35137 3.39563 3.41718 3.45974 4.31062 4.40892 4.49096 4.57879 4.68256 4.78559 4.84861 4.89590 5.08040 5.17668 5.22360 5.28046 5.33626 5.34888 5.37258 5.39497 5.40240 5.49941 5.53199 5.69352 5.83216 5.84512 5.97593 6.12250 6.18026 6.20738 6.29809 6.52120 6.55855 6.75254 6.83267 7.00489 7.18929 7.29461 7.73647 7.89896 8.06078 8.20984 8.47811 9.09655 9.65779 11.16189 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.002965 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.812560 B = 9441.380589 C =10052.811503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C 0.138 3.862 4 C -0.152 4.152 5 C 0.057 3.943 6 O -0.379 6.379 7 C 0.046 3.954 8 C 0.072 3.928 9 N -0.617 5.617 10 C 0.516 3.484 11 O -0.524 6.524 12 C -0.139 4.139 13 C -0.102 4.102 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.680 18.088 2.014 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C 0.053 3.947 4 C -0.210 4.210 5 C -0.021 4.021 6 O -0.297 6.297 7 C -0.032 4.032 8 C -0.051 4.051 9 N -0.353 5.353 10 C 0.306 3.694 11 O -0.400 6.400 12 C -0.179 4.179 13 C -0.140 4.140 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.038 17.473 1.916 25.912 hybrid contribution 1.299 -0.150 0.035 1.308 sum -17.739 17.323 1.951 24.871 Atomic orbital electron populations 1.22082 0.96770 1.02020 1.01285 1.21977 0.93751 0.92963 1.05495 1.21357 0.79863 0.97671 0.95784 1.22104 1.01787 1.00863 0.96297 1.23132 0.97819 0.84334 0.96782 1.87950 1.21010 1.28150 1.92552 1.22995 0.81743 1.01863 0.96568 1.22435 0.98174 0.85164 0.99373 1.48354 1.06392 1.07341 1.73211 1.21074 0.90421 0.82852 0.75035 1.90737 1.71244 1.29637 1.48379 1.21863 0.90404 1.02049 1.03601 1.21450 0.97006 0.92716 1.02840 1.21647 0.91862 1.01245 1.00010 1.19087 0.95157 0.90174 0.97235 1.21247 0.91971 0.92727 1.50029 0.92820 1.25037 0.98448 0.95605 0.95435 1.69959 1.35467 0.97696 1.50362 0.86672 0.85890 0.76963 0.78541 1.20287 1.21307 1.20276 0.93064 0.92664 0.92294 0.89412 0.90464 0.92242 0.91260 0.91945 0.92633 0.87707 0.87591 0.92510 0.90531 0.88290 0.89236 0.89380 0.91837 0.91808 0.93517 0.93538 0.96618 0.96613 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.22 37.16 0.34 -1.08 16 2 C -0.10 -1.20 3.41 -26.73 -0.09 -1.29 16 3 C 0.14 1.41 0.80 -131.31 -0.11 1.30 16 4 C -0.15 -1.39 8.30 37.15 0.31 -1.08 16 5 C 0.06 0.51 4.90 37.31 0.18 0.70 16 6 O -0.38 -3.59 10.37 -35.23 -0.37 -3.95 16 7 C 0.05 0.35 6.99 37.31 0.26 0.61 16 8 C 0.07 0.58 6.13 -3.53 -0.02 0.56 16 9 N -0.62 -6.80 2.71 -157.52 -0.43 -7.23 16 10 C 0.52 7.19 7.61 -10.99 -0.08 7.10 16 11 O -0.52 -8.95 11.54 5.56 0.06 -8.88 16 12 C -0.14 -1.85 4.14 -27.89 -0.12 -1.97 16 13 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H 0.05 0.38 6.56 -51.93 -0.34 0.04 16 25 H 0.05 0.43 6.57 -51.93 -0.34 0.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.22 6.67 -51.93 -0.35 0.88 16 28 H 0.08 1.05 6.91 -51.93 -0.36 0.69 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 31 H 0.06 0.56 7.23 -51.93 -0.38 0.18 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.79 6.87 -51.93 -0.36 0.43 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.57 7.67 -51.93 -0.40 0.17 16 37 H 0.10 0.68 6.08 -51.93 -0.32 0.37 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.01 7.46 -51.93 -0.39 0.62 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.79 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -33.01 351.70 -8.02 -41.02 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -8.17 Total: -3.38 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.13 Total: -12.93 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.31 Total: -34.09 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.30 Total: -12.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.01 -8.02 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588759182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.237 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds