Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47027 * 2 1 4 4 C 1.52996 * 109.67864 * 65.91266 * 3 2 1 5 5 C 1.53300 * 109.68286 * 305.39263 * 3 2 1 6 6 O 1.42960 * 109.26609 * 187.94843 * 5 3 2 7 7 C 1.43051 * 114.10967 * 62.55255 * 6 5 3 8 8 C 1.53295 * 109.25139 * 297.45802 * 7 6 5 9 9 N 1.47152 * 109.68250 * 186.46632 * 3 2 1 10 10 C 1.34772 * 120.98169 * 350.28654 * 9 3 2 11 11 O 1.21277 * 120.00004 * 4.69919 * 10 9 3 12 12 C 1.50703 * 119.99996 * 184.71279 * 10 9 3 13 13 C 1.52998 * 109.47204 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47309 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47309 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47063 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00289 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99856 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00108 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00170 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46935 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47391 * 119.99751 * 20 18 16 23 23 H 1.48501 * 109.47572 * 240.00465 * 20 18 16 24 24 H 1.08997 * 109.47375 * 300.00468 * 1 2 3 25 25 H 1.09005 * 109.46731 * 60.00223 * 1 2 3 26 26 H 1.09001 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47425 * 240.00085 * 2 1 3 28 28 H 1.08997 * 109.46946 * 119.99528 * 2 1 3 29 29 H 1.09000 * 109.47088 * 299.47820 * 4 3 2 30 30 H 1.08996 * 109.47724 * 59.48281 * 4 3 2 31 31 H 1.09005 * 109.47029 * 179.48322 * 4 3 2 32 32 H 1.08995 * 109.51293 * 307.90233 * 5 3 2 33 33 H 1.09004 * 109.50959 * 67.99784 * 5 3 2 34 34 H 1.08993 * 109.49569 * 177.52791 * 7 6 5 35 35 H 1.09000 * 109.54384 * 57.41156 * 7 6 5 36 36 H 1.09005 * 109.68444 * 292.58264 * 8 7 6 37 37 H 1.09001 * 109.68559 * 172.03094 * 8 7 6 38 38 H 1.09001 * 109.46935 * 299.99103 * 12 10 9 39 39 H 1.08994 * 109.47386 * 59.98978 * 12 10 9 40 40 H 1.09001 * 109.46838 * 299.99648 * 13 12 10 41 41 H 1.08994 * 109.47387 * 59.99464 * 13 12 10 42 42 H 1.09001 * 109.46940 * 299.99656 * 14 13 12 43 43 H 1.08994 * 109.47276 * 59.99466 * 14 13 12 44 44 H 1.09001 * 109.46838 * 299.99718 * 15 14 13 45 45 H 1.09002 * 109.47556 * 59.99823 * 15 14 13 46 46 H 0.97001 * 119.99813 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6574 2.1242 1.3152 5 6 1.4239 2.2080 -1.1767 6 8 2.0431 3.4924 -1.2798 7 6 3.4458 3.4444 -1.5565 8 6 4.1654 2.7423 -0.3993 9 7 3.5032 1.4509 -0.1560 10 6 4.2157 0.3095 -0.0791 11 8 3.6454 -0.7546 0.0361 12 6 5.7209 0.3555 -0.1358 13 6 6.2790 -1.0649 -0.0279 14 6 7.8072 -1.0183 -0.0862 15 6 8.3653 -2.4387 0.0223 16 6 9.8705 -2.3928 -0.0357 17 1 10.3782 -1.4453 -0.1391 18 6 10.5994 -3.5604 0.0444 19 7 9.9811 -4.7142 0.1709 20 14 12.4652 -3.5034 -0.0268 21 1 12.9123 -2.0946 -0.1697 22 1 13.0260 -4.0757 1.2236 23 1 12.9406 -4.2945 -1.1901 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 0.5723 2.1326 1.4178 30 1 2.0971 1.5775 2.1493 31 1 2.0302 3.1486 1.3153 32 1 1.5865 1.6503 -2.0989 33 1 0.3538 2.3319 -1.0101 34 1 3.8305 4.4586 -1.6626 35 1 3.6165 2.8916 -2.4803 36 1 4.1074 3.3592 0.4975 37 1 5.2096 2.5754 -0.6636 38 1 6.0355 0.7990 -1.0806 39 1 6.0975 0.9573 0.6912 40 1 5.9645 -1.5081 0.9169 41 1 5.9025 -1.6671 -0.8548 42 1 8.1214 -0.5753 -1.0313 43 1 8.1841 -0.4161 0.7404 44 1 8.0511 -2.8813 0.9676 45 1 7.9885 -3.0414 -0.8040 46 1 10.4940 -5.5357 0.2269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588759183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = -93.420921 kcal Electronic energy + Delta-G solvation = -23213.289404 eV Core-core repulsion = 19909.685591 eV Total energy + Delta-G solvation = -3303.603812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07909 -38.56942 -36.00848 -34.88590 -34.50186 -32.54878 -30.26907 -29.83359 -28.79402 -26.69491 -25.84180 -24.61098 -22.79521 -22.31056 -20.62302 -19.91549 -18.62980 -16.94402 -16.84686 -16.19971 -16.07665 -15.97873 -15.43126 -15.20783 -14.59153 -14.47784 -14.16732 -13.77219 -13.49867 -13.15412 -13.01786 -12.59255 -12.45026 -12.30366 -12.14418 -11.91828 -11.73860 -11.59445 -11.53850 -11.42511 -11.00844 -10.85800 -10.74022 -10.53167 -10.47135 -10.41279 -10.38172 -9.61949 -9.33480 -9.05972 -8.93049 -8.63636 -8.31051 -5.95621 -3.98101 2.65774 2.69210 3.32791 3.40005 3.43872 3.46034 4.30975 4.40734 4.48962 4.57798 4.68212 4.78408 4.84751 4.89501 5.08084 5.17689 5.22497 5.28006 5.33646 5.34855 5.36997 5.39320 5.40024 5.49722 5.53071 5.69131 5.83160 5.84611 5.97569 6.12176 6.17837 6.20760 6.29748 6.51965 6.55762 6.74751 6.83182 7.00443 7.18867 7.29384 7.74038 7.89698 8.05798 8.20902 8.47681 9.09847 9.65639 11.15729 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.002965 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.430851 B = 9442.207595 C =10052.645665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C 0.138 3.862 4 C -0.152 4.152 5 C 0.057 3.943 6 O -0.378 6.378 7 C 0.046 3.954 8 C 0.072 3.928 9 N -0.617 5.617 10 C 0.516 3.484 11 O -0.524 6.524 12 C -0.139 4.139 13 C -0.102 4.102 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 18.127 -1.668 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C 0.053 3.947 4 C -0.210 4.210 5 C -0.021 4.021 6 O -0.296 6.296 7 C -0.032 4.032 8 C -0.051 4.051 9 N -0.353 5.353 10 C 0.306 3.694 11 O -0.400 6.400 12 C -0.179 4.179 13 C -0.140 4.140 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.069 17.523 -1.568 25.945 hybrid contribution 1.291 -0.177 -0.047 1.304 sum -17.777 17.346 -1.615 24.891 Atomic orbital electron populations 1.22081 0.96775 1.02024 1.01281 1.21974 0.93744 0.92956 1.05485 1.21358 0.79912 0.97669 0.95741 1.22101 1.01825 1.00889 0.96207 1.23131 0.97773 0.84294 0.96882 1.87973 1.21393 1.28089 1.92191 1.23008 0.81780 1.01839 0.96563 1.22436 0.98153 0.85108 0.99442 1.48353 1.06589 1.07248 1.73107 1.21075 0.90391 0.82859 0.75059 1.90737 1.71306 1.29615 1.48333 1.21862 0.90410 1.02045 1.03596 1.21450 0.97002 0.92708 1.02855 1.21645 0.91865 1.01240 1.00006 1.19096 0.95197 0.90177 0.97259 1.21319 0.92010 0.92732 1.49735 0.92717 1.25046 0.98470 0.95622 0.95463 1.69987 1.35255 0.97641 1.50571 0.86559 0.85981 0.78014 0.77568 1.19776 1.21050 1.21047 0.92685 0.93049 0.92292 0.90358 0.89532 0.91283 0.92242 0.91958 0.92637 0.87711 0.87592 0.92495 0.90530 0.88281 0.89381 0.89235 0.91810 0.91837 0.93533 0.93519 0.96602 0.96609 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.20 37.16 0.34 -1.08 16 2 C -0.10 -1.20 3.42 -26.73 -0.09 -1.29 16 3 C 0.14 1.41 0.80 -131.31 -0.11 1.30 16 4 C -0.15 -1.39 8.30 37.16 0.31 -1.08 16 5 C 0.06 0.51 4.86 37.31 0.18 0.69 16 6 O -0.38 -3.59 10.40 -35.23 -0.37 -3.95 16 7 C 0.05 0.34 6.98 37.31 0.26 0.60 16 8 C 0.07 0.58 6.13 -3.53 -0.02 0.56 16 9 N -0.62 -6.80 2.71 -157.51 -0.43 -7.23 16 10 C 0.52 7.18 7.60 -10.99 -0.08 7.10 16 11 O -0.52 -8.94 11.54 5.56 0.06 -8.88 16 12 C -0.14 -1.85 4.14 -27.88 -0.12 -1.97 16 13 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 16 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.05 0.42 6.62 -51.93 -0.34 0.08 16 25 H 0.05 0.38 6.54 -51.93 -0.34 0.04 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.07 6.84 -51.93 -0.36 0.71 16 28 H 0.09 1.20 6.74 -51.93 -0.35 0.85 16 29 H 0.07 0.53 6.64 -51.93 -0.34 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.56 7.21 -51.93 -0.37 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.79 6.86 -51.93 -0.36 0.43 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.57 7.64 -51.93 -0.40 0.17 16 37 H 0.10 0.68 6.07 -51.93 -0.32 0.37 16 38 H 0.09 1.01 7.46 -51.93 -0.39 0.62 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -33.04 351.74 -8.02 -41.06 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -8.17 Total: -3.46 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.13 Total: -12.91 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.31 Total: -34.05 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.30 Total: -12.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.04 -8.02 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588759183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.362 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds