Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46609 * 2 1 4 4 C 1.52998 * 109.47124 * 240.00309 * 2 1 3 5 5 C 1.50701 * 109.47210 * 59.99659 * 4 2 1 6 6 H 1.08003 * 120.00013 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99643 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00259 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47119 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47122 * 120.00110 * 9 7 5 12 12 H 1.48502 * 109.47355 * 240.00110 * 9 7 5 13 13 C 1.52994 * 109.46895 * 120.00076 * 2 1 3 14 14 N 1.46501 * 109.47191 * 299.99874 * 13 2 1 15 15 C 1.34779 * 119.99978 * 180.02562 * 14 13 2 16 16 O 1.21289 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00189 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.61379 * 59.78329 * 17 15 14 19 19 C 1.53176 * 109.54476 * 180.02562 * 17 15 14 20 20 C 1.53093 * 109.16348 * 62.88958 * 19 17 15 21 21 O 1.42904 * 109.42351 * 57.60111 * 20 19 17 22 22 C 1.42902 * 114.09961 * 298.86177 * 21 20 19 23 23 C 1.53094 * 109.42545 * 61.14161 * 22 21 20 24 24 H 1.08993 * 109.46880 * 299.99542 * 1 2 3 25 25 H 1.08997 * 109.47033 * 60.00279 * 1 2 3 26 26 H 1.09001 * 109.46529 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47071 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47436 * 300.00116 * 3 2 1 29 29 H 1.09002 * 109.47203 * 60.00413 * 3 2 1 30 30 H 1.08994 * 109.46935 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46798 * 299.99878 * 4 2 1 32 32 H 0.97004 * 120.00025 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46786 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47447 * 60.00207 * 13 2 1 35 35 H 0.96994 * 120.00023 * 0.02562 * 14 13 2 36 36 H 1.08993 * 109.47037 * 180.22600 * 18 17 15 37 37 H 1.09000 * 109.46734 * 300.22349 * 18 17 15 38 38 H 1.08993 * 109.47025 * 60.21871 * 18 17 15 39 39 H 1.09004 * 109.52469 * 302.98390 * 19 17 15 40 40 H 1.08998 * 109.57356 * 182.82496 * 19 17 15 41 41 H 1.09002 * 109.48198 * 177.59219 * 20 19 17 42 42 H 1.08999 * 109.48029 * 297.61833 * 20 19 17 43 43 H 1.09000 * 109.47314 * 301.15801 * 22 21 20 44 44 H 1.09001 * 109.49082 * 181.13246 * 22 21 20 45 45 H 1.08997 * 109.52488 * 182.49772 * 23 22 21 46 46 H 1.08995 * 109.52127 * 62.29758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4814 -3.7320 8 7 2.6274 -1.5507 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 0.4225 1.5651 -4.8530 11 1 2.4026 0.8664 -6.0655 12 1 0.4237 -0.5353 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5757 -1.4765 3.7807 17 6 1.3759 0.2198 4.9000 18 6 -0.1542 0.2266 4.9011 19 6 1.8865 -0.5003 6.1517 20 6 3.4156 -0.4329 6.1817 21 8 3.8317 0.9340 6.1547 22 6 3.4230 1.6452 4.9845 23 6 1.8942 1.6613 4.9064 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8623 -1.8816 -4.7337 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 -0.5145 0.7446 5.7898 37 1 -0.5158 0.7395 4.0099 38 1 -0.5220 -0.7994 4.9042 39 1 1.5682 -1.5426 6.1277 40 1 1.4830 -0.0167 7.0414 41 1 3.7826 -0.9066 7.0923 42 1 3.8195 -0.9530 5.3132 43 1 3.8270 1.1524 4.1002 44 1 3.7953 2.6685 5.0324 45 1 1.5814 2.1649 3.9917 46 1 1.4909 2.1895 5.7704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588770480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -114.804114 kcal Electronic energy + Delta-G solvation = -23916.727063 eV Core-core repulsion = 20612.196006 eV Total energy + Delta-G solvation = -3304.531057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90442 -38.42302 -37.03109 -34.97264 -33.62734 -32.11997 -31.11298 -28.63936 -27.18364 -26.56377 -26.37570 -23.85931 -23.76268 -22.83896 -21.61784 -19.55404 -18.08348 -16.77346 -16.35096 -16.14797 -16.08122 -15.49153 -15.25892 -14.72270 -14.55330 -14.27348 -14.00510 -13.65425 -13.17407 -12.83722 -12.76611 -12.67364 -12.32836 -12.29827 -12.15285 -12.06665 -12.02207 -11.43602 -11.19221 -11.06080 -10.86662 -10.70718 -10.68706 -10.57157 -10.44319 -10.27704 -9.92233 -9.78600 -9.42521 -9.14376 -8.94263 -8.74963 -8.39119 -6.02894 -4.04347 2.73556 3.27932 3.34322 3.36656 3.39052 3.81335 4.32901 4.42172 4.46655 4.57982 4.84505 4.92908 5.11542 5.28429 5.32723 5.35574 5.41562 5.45533 5.46757 5.52749 5.57661 5.62429 5.70190 5.73782 5.84243 5.87235 5.93575 6.04969 6.11489 6.17487 6.25098 6.34039 6.52895 6.58162 6.72149 7.01543 7.02702 7.08373 7.12464 7.60555 7.69490 7.72538 7.95653 8.35426 8.39324 9.00647 9.59081 11.08582 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.003628 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.064305 B = 7716.598193 C = 7786.153604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.718 5.718 15 C 0.516 3.484 16 O -0.542 6.542 17 C -0.085 4.085 18 C -0.139 4.139 19 C -0.127 4.127 20 C 0.048 3.952 21 O -0.385 6.385 22 C 0.058 3.942 23 C -0.142 4.142 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 6.419 18.707 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.369 5.369 15 C 0.301 3.699 16 O -0.420 6.420 17 C -0.088 4.088 18 C -0.196 4.196 19 C -0.165 4.165 20 C -0.029 4.029 21 O -0.304 6.304 22 C -0.019 4.019 23 C -0.180 4.180 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.293 5.672 18.775 19.887 hybrid contribution -0.801 0.609 -1.303 1.646 sum -4.095 6.281 17.472 19.013 Atomic orbital electron populations 1.21761 0.95294 1.01163 1.00193 1.20903 0.95451 0.95840 0.95083 1.21760 1.00549 0.95897 1.00195 1.19092 0.96354 0.95219 0.89489 1.21215 1.31167 1.12067 0.90503 0.92211 1.25015 0.95295 0.95070 0.99106 1.69976 1.36955 1.23053 1.23361 0.86596 0.78624 0.79673 0.83444 1.19801 1.21114 1.21116 1.21639 0.98870 0.96051 0.82982 1.46229 1.52952 1.31851 1.05855 1.20414 0.80323 0.84516 0.84612 1.90643 1.38075 1.26579 1.86678 1.20903 0.97408 0.96219 0.94252 1.21833 0.92190 1.02885 1.02728 1.22006 0.97296 1.01382 0.95773 1.22852 0.93586 0.82856 1.03561 1.87882 1.77115 1.23775 1.41637 1.22566 0.93247 0.97381 0.88714 1.22278 0.97396 0.94713 1.03647 0.95343 0.91391 0.93356 0.93348 0.91376 0.95364 0.96352 0.96362 0.93073 0.91863 0.91821 0.76723 0.91395 0.91900 0.91814 0.90185 0.90777 0.89242 0.90383 0.93016 0.88655 0.90387 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.38 7.65 -34.44 -0.26 -13.65 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.19 4.56 -4.04 -0.02 2.17 16 14 N -0.72 -9.94 4.73 -60.30 -0.29 -10.22 16 15 C 0.52 7.29 5.15 -10.99 -0.06 7.24 16 16 O -0.54 -9.58 13.84 5.55 0.08 -9.50 16 17 C -0.08 -0.90 0.63 -155.47 -0.10 -1.00 16 18 C -0.14 -1.20 8.39 37.16 0.31 -0.88 16 19 C -0.13 -1.34 4.56 -26.59 -0.12 -1.47 16 20 C 0.05 0.58 6.55 37.21 0.24 0.82 16 21 O -0.39 -4.91 10.77 -35.23 -0.38 -5.29 16 22 C 0.06 0.64 6.62 37.21 0.25 0.89 16 23 C -0.14 -1.33 4.85 -26.59 -0.13 -1.46 16 24 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 25 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.69 4.99 -40.82 -0.20 4.49 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 7.56 -51.93 -0.39 0.11 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.14 5.80 -51.93 -0.30 0.84 16 43 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 0.65 7.52 -51.93 -0.39 0.25 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -30.35 348.52 -7.19 -37.55 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.99 Total: 1.97 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 0.42 Total: -10.25 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.45 Total: -35.69 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.30 Total: -14.79 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.35 -7.19 -37.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588770480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.256 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds