Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47231 * 2 1 4 4 C 1.52999 * 109.46961 * 180.02562 * 3 2 1 5 5 N 1.46502 * 110.56598 * 307.67520 * 4 3 2 6 6 C 1.34771 * 119.99736 * 178.02460 * 5 4 3 7 7 O 1.21285 * 120.00491 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99881 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.47244 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47049 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47342 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00339 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99833 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99927 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00027 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46746 * 90.00478 * 16 14 12 18 18 H 1.48498 * 109.47483 * 210.00050 * 16 14 12 19 19 H 1.48498 * 109.47088 * 330.00642 * 16 14 12 20 20 C 1.54514 * 110.50836 * 185.00088 * 4 3 2 21 21 C 1.54480 * 104.18308 * 241.42383 * 20 4 3 22 22 O 1.44428 * 104.80435 * 335.95038 * 21 20 4 23 23 C 1.44424 * 105.27160 * 40.51475 * 22 21 20 24 24 H 1.09006 * 109.47312 * 59.99991 * 1 2 3 25 25 H 1.09004 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47292 * 299.99965 * 1 2 3 27 27 H 1.09007 * 109.47295 * 240.00445 * 2 1 3 28 28 H 1.08993 * 109.47533 * 120.00064 * 2 1 3 29 29 H 1.08992 * 109.46953 * 59.99828 * 3 2 1 30 30 H 1.09004 * 109.46750 * 299.99728 * 3 2 1 31 31 H 0.96996 * 119.99817 * 358.02573 * 5 4 3 32 32 H 1.09005 * 109.46976 * 300.00110 * 8 6 5 33 33 H 1.08998 * 109.46960 * 59.99996 * 8 6 5 34 34 H 1.08994 * 109.46754 * 299.99773 * 9 8 6 35 35 H 1.08998 * 109.47173 * 60.00092 * 9 8 6 36 36 H 1.09005 * 109.47215 * 300.00103 * 10 9 8 37 37 H 1.09006 * 109.47078 * 59.99808 * 10 9 8 38 38 H 1.08997 * 109.46949 * 300.00549 * 11 10 9 39 39 H 1.09003 * 109.46847 * 59.99486 * 11 10 9 40 40 H 0.97008 * 119.99626 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.51267 * 122.70829 * 20 4 3 42 42 H 1.08994 * 110.51194 * 0.13489 * 20 4 3 43 43 H 1.09001 * 110.37326 * 94.78238 * 21 20 4 44 44 H 1.09003 * 110.37036 * 217.01125 * 21 20 4 45 45 H 1.08998 * 110.37439 * 78.31876 * 23 22 21 46 46 H 1.09001 * 110.36847 * 200.54830 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0850 0.6040 1.0847 6 6 5.4139 0.4369 1.2345 7 8 6.1835 0.9803 0.4706 8 6 5.9438 -0.4261 2.3505 9 6 7.4727 -0.4472 2.2971 10 6 8.0106 -1.3229 3.4305 11 6 9.5395 -1.3446 3.3767 12 6 10.0692 -2.2076 4.4928 13 1 9.3841 -2.6918 5.1727 14 6 11.4288 -2.3781 4.6464 15 7 11.8911 -3.1317 5.6201 16 14 12.6140 -1.5400 3.4707 17 1 12.9731 -0.2003 4.0014 18 1 13.8420 -2.3638 3.3347 19 1 11.9692 -1.3893 2.1416 20 6 4.1114 2.8841 0.1255 21 6 4.9145 3.1021 -1.1760 22 8 5.2811 1.7743 -1.6102 23 6 4.1144 0.9587 -1.3666 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.4696 0.1691 1.6953 32 1 5.6197 -0.0202 3.3089 33 1 5.5619 -1.4408 2.2378 34 1 7.7971 -0.8529 1.3388 35 1 7.8543 0.5675 2.4100 36 1 7.6861 -0.9169 4.3887 37 1 7.6290 -2.3378 3.3181 38 1 9.8636 -1.7508 2.4186 39 1 9.9214 -0.3298 3.4889 40 1 12.8477 -3.2519 5.7279 41 1 4.7623 2.9729 0.9953 42 1 3.2892 3.5966 0.1907 43 1 4.2936 3.5892 -1.9279 44 1 5.8055 3.6975 -0.9769 45 1 3.3708 1.1171 -2.1477 46 1 4.3915 -0.0943 -1.3154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589029577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -110.970079 kcal Electronic energy + Delta-G solvation = -22880.115549 eV Core-core repulsion = 19575.750748 eV Total energy + Delta-G solvation = -3304.364801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84776 -38.40340 -36.20576 -34.94618 -33.55260 -32.54369 -31.37598 -30.00675 -29.18052 -26.37191 -25.86114 -23.38628 -22.42345 -21.75256 -20.56289 -19.97223 -19.68598 -17.15264 -16.77081 -16.49655 -15.91557 -15.74692 -15.50689 -15.05825 -14.73851 -14.20343 -14.08714 -13.85068 -13.57692 -13.15507 -12.88301 -12.81414 -12.60205 -12.22624 -12.02909 -11.96760 -11.74157 -11.70154 -11.54723 -11.40324 -11.06156 -10.94916 -10.90316 -10.68441 -10.48550 -9.93917 -9.82781 -9.67840 -9.59690 -9.30381 -9.08397 -9.00093 -8.46625 -5.98031 -3.95251 2.79938 3.06186 3.37864 3.44748 3.51638 3.82387 4.21346 4.29957 4.47782 4.52886 4.67871 4.70284 4.84401 4.93785 5.00164 5.08199 5.19374 5.28772 5.29473 5.33169 5.35317 5.36219 5.38273 5.48012 5.60479 5.63752 5.67783 5.74232 5.81939 5.86112 5.87911 6.08625 6.21304 6.40938 6.48345 6.73682 6.80738 6.88234 7.03467 7.42198 7.47968 7.55039 7.87900 8.37875 8.61236 9.07100 9.65608 11.15497 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.003049 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.034468 B = 9179.745998 C = 9933.047381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C 0.145 3.855 5 N -0.730 5.730 6 C 0.501 3.499 7 O -0.501 6.501 8 C -0.138 4.138 9 C -0.104 4.104 10 C -0.102 4.102 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.907 5.907 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C -0.156 4.156 21 C 0.054 3.946 22 O -0.343 6.343 23 C 0.047 3.953 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.398 0.602 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.936 10.985 -13.035 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C 0.058 3.942 5 N -0.386 5.386 6 C 0.287 3.713 7 O -0.374 6.374 8 C -0.178 4.178 9 C -0.142 4.142 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.188 1.188 20 C -0.195 4.195 21 C -0.023 4.023 22 O -0.260 6.260 23 C -0.031 4.031 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.967 11.247 -13.613 30.580 hybrid contribution 0.149 0.226 0.006 0.271 sum -24.818 11.473 -13.607 30.540 Atomic orbital electron populations 1.21771 0.95441 1.01935 1.01861 1.21560 0.96111 0.96207 1.02622 1.21863 0.91927 0.98022 1.03433 1.21714 0.93536 0.90591 0.88407 1.46244 1.07517 1.52129 1.32690 1.21099 0.81779 0.81951 0.86440 1.90836 1.56133 1.46805 1.43584 1.21772 0.99353 0.99758 0.96966 1.21455 0.91012 1.01333 1.00420 1.21475 0.98271 0.98064 0.96186 1.19571 0.91786 0.96583 0.97321 1.21191 0.92457 1.29034 1.12984 0.91138 1.25044 0.98437 0.94928 0.95223 1.69926 1.13624 1.39358 1.31710 0.86773 0.80478 0.79575 0.82482 1.20333 1.21475 1.18849 1.23288 1.00247 0.95479 1.00458 1.23202 0.99108 0.86529 0.93493 1.89294 1.33925 1.18677 1.84130 1.23719 0.88545 0.96999 0.93859 0.92699 0.92509 0.92641 0.91552 0.91688 0.90831 0.90205 0.76710 0.89372 0.89332 0.91792 0.91908 0.92982 0.92931 0.96620 0.97097 0.92844 0.90015 0.90563 0.93150 0.89365 0.92280 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.32 16 2 C -0.13 -0.66 5.57 -26.73 -0.15 -0.81 16 3 C -0.11 -0.64 4.15 -26.73 -0.11 -0.75 16 4 C 0.14 1.25 0.87 -130.08 -0.11 1.14 16 5 N -0.73 -6.80 4.81 -46.00 -0.22 -7.02 16 6 C 0.50 6.58 6.91 -10.99 -0.08 6.50 16 7 O -0.50 -8.55 12.05 -17.60 -0.21 -8.76 16 8 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 9 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.19 16 11 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 12 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -28.71 13.96 55.43 0.77 -27.94 16 16 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 20 C -0.16 -1.47 5.77 -25.16 -0.15 -1.62 16 21 C 0.05 0.58 7.38 37.93 0.28 0.86 16 22 O -0.34 -4.87 9.52 -58.39 -0.56 -5.43 16 23 C 0.05 0.50 5.48 38.10 0.21 0.71 16 24 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.38 7.64 -51.92 -0.40 -0.01 16 28 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.39 7.97 -51.93 -0.41 -0.02 16 31 H 0.40 2.68 7.00 -40.82 -0.29 2.40 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 41 H 0.08 0.95 7.20 -51.93 -0.37 0.57 16 42 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.50 7.75 -51.93 -0.40 0.09 16 46 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -34.87 357.66 -8.64 -43.51 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.45 Total: -3.18 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.70 Total: -14.60 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.55 Total: -34.96 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.77 Total: -14.19 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.87 -8.64 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589029577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.460 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds