Wall clock time and date at job start Tue Mar 31 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00075 * 2 1 4 4 H 1.48496 * 109.47125 * 270.00055 * 3 2 1 5 5 H 1.48501 * 109.46807 * 30.00514 * 3 2 1 6 6 H 1.48500 * 109.47198 * 149.99802 * 3 2 1 7 7 C 1.37882 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47462 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47386 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99977 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00196 * 179.97438 * 13 12 11 16 16 C 1.46926 * 120.63154 * 5.38236 * 15 13 12 17 17 C 1.53198 * 108.77492 * 233.58874 * 16 15 13 18 18 C 1.53041 * 109.30980 * 305.35854 * 17 16 15 19 19 C 1.53045 * 109.53630 * 61.37066 * 18 17 16 20 20 C 1.46929 * 120.63175 * 185.36089 * 15 13 12 21 21 H 1.09000 * 109.58526 * 246.34218 * 20 15 13 22 22 C 1.53000 * 109.58711 * 6.62425 * 20 15 13 23 23 C 1.52994 * 109.47093 * 178.28864 * 22 20 15 24 24 O 1.42903 * 109.47035 * 174.92443 * 23 22 20 25 25 H 0.97005 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46856 * 59.99519 * 9 7 2 27 27 H 1.09001 * 109.46955 * 299.99712 * 9 7 2 28 28 H 1.08995 * 109.47125 * 59.99821 * 10 9 7 29 29 H 1.09001 * 109.47100 * 299.99780 * 10 9 7 30 30 H 1.09004 * 109.47311 * 59.99659 * 11 10 9 31 31 H 1.09001 * 109.46938 * 299.99904 * 11 10 9 32 32 H 1.08995 * 109.47142 * 59.99672 * 12 11 10 33 33 H 1.09001 * 109.46815 * 299.99794 * 12 11 10 34 34 H 1.09002 * 109.58661 * 353.37153 * 16 15 13 35 35 H 1.08997 * 109.58800 * 113.65924 * 16 15 13 36 36 H 1.08997 * 109.49549 * 65.31488 * 17 16 15 37 37 H 1.09004 * 109.49468 * 185.41293 * 17 16 15 38 38 H 1.08999 * 109.45502 * 181.38356 * 18 17 16 39 39 H 1.09003 * 109.46207 * 301.36248 * 18 17 16 40 40 H 1.08999 * 109.49370 * 178.67912 * 19 18 17 41 41 H 1.08999 * 109.49775 * 58.58045 * 19 18 17 42 42 H 1.09003 * 109.47028 * 58.28868 * 22 20 15 43 43 H 1.08997 * 109.47219 * 298.29211 * 22 20 15 44 44 H 1.09003 * 109.47328 * 54.92494 * 23 22 20 45 45 H 1.08997 * 109.47180 * 294.92446 * 23 22 20 46 46 H 0.96699 * 113.99665 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7210 -7.4552 0.0018 14 8 0.5081 -7.4552 0.0018 15 7 2.3948 -8.6223 0.0018 16 6 3.8592 -8.6413 0.1204 17 6 4.4376 -9.4529 -1.0431 18 6 3.7907 -10.8397 -1.0637 19 6 2.2819 -10.6975 -1.2770 20 6 1.6790 -9.9000 -0.1163 21 1 1.7833 -10.4642 0.8105 22 6 0.1976 -9.6344 -0.3912 23 6 -0.5372 -10.9662 -0.5561 24 8 -1.9386 -10.7230 -0.6950 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8533 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 3.1011 -6.0918 0.8917 33 1 3.1011 -6.0927 -0.8882 34 1 4.2423 -7.6216 0.0806 35 1 4.1432 -9.1017 1.0666 36 1 4.2302 -8.9406 -1.9825 37 1 5.5151 -9.5560 -0.9145 38 1 4.2184 -11.4278 -1.8757 39 1 3.9773 -11.3416 -0.1143 40 1 1.8251 -11.6864 -1.3150 41 1 2.0948 -10.1735 -2.2143 42 1 0.0969 -9.0484 -1.3048 43 1 -0.2337 -9.0824 0.4438 44 1 -0.3618 -11.5891 0.3211 45 1 -0.1674 -11.4777 -1.4447 46 1 -2.4679 -11.5249 -0.8042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589832558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:02 Heat of formation + Delta-G solvation = -108.372038 kcal Electronic energy + Delta-G solvation = -22739.843944 eV Core-core repulsion = 19435.591802 eV Total energy + Delta-G solvation = -3304.252141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69463 -37.73935 -36.98163 -34.98289 -33.60206 -32.99006 -32.41418 -29.61055 -28.89165 -26.08155 -24.80227 -24.12876 -22.39997 -21.37125 -20.87339 -19.91055 -18.96796 -17.54936 -16.67235 -16.28942 -16.12088 -15.63842 -15.35618 -14.76474 -14.56876 -14.43759 -14.13646 -13.97764 -13.79717 -13.22899 -13.14158 -12.64983 -12.48903 -12.14774 -11.84050 -11.71738 -11.54964 -11.41439 -11.30338 -11.25787 -11.03089 -10.95048 -10.87527 -10.49263 -10.46027 -10.34471 -10.07840 -9.57133 -9.27585 -9.00074 -8.83697 -8.68450 -8.27533 -5.92215 -3.94710 2.72568 2.84414 3.35950 3.41837 3.45049 4.01130 4.40359 4.48402 4.50581 4.52236 4.66524 4.82987 4.91901 4.98576 5.10024 5.12826 5.18185 5.29676 5.36311 5.37750 5.41711 5.43235 5.44984 5.51262 5.59337 5.69386 5.69598 5.90888 5.94708 6.16926 6.19141 6.24994 6.35235 6.59217 6.64138 6.88653 7.06299 7.23674 7.37061 7.49529 7.77586 7.94113 8.09556 8.30190 8.51218 9.13094 9.68730 11.19114 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.002991 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.571673 B = 9358.522869 C =10421.651064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.523 6.523 15 N -0.618 5.618 16 C 0.107 3.893 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.135 4.135 20 C 0.152 3.848 21 H 0.069 0.931 22 C -0.115 4.115 23 C 0.070 3.930 24 O -0.569 6.569 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.039 0.961 45 H 0.040 0.960 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -27.427 -1.266 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.303 3.697 14 O -0.398 6.398 15 N -0.353 5.353 16 C -0.016 4.016 17 C -0.175 4.175 18 C -0.157 4.157 19 C -0.174 4.174 20 C 0.049 3.951 21 H 0.087 0.913 22 C -0.152 4.152 23 C -0.008 4.008 24 O -0.373 6.373 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.392 -26.661 -1.194 27.693 hybrid contribution 0.487 0.221 -0.116 0.548 sum 7.880 -26.441 -1.310 27.621 Atomic orbital electron populations 1.69978 1.06042 1.26475 1.50949 1.25045 0.94836 0.99209 0.95498 0.86615 0.79823 0.83641 0.78028 1.20726 1.21261 1.19932 1.21288 0.92962 0.91225 1.50361 0.92784 1.19094 0.94062 0.91255 0.97315 1.21641 0.99056 0.94064 0.99965 1.21457 0.97015 0.92675 1.02954 1.21853 1.00129 0.92300 1.03601 1.21103 0.88349 0.85284 0.74989 1.90755 1.13879 1.86705 1.48507 1.48214 1.07052 1.05647 1.74389 1.21754 0.79445 1.02029 0.98373 1.21937 1.00108 0.96190 0.99295 1.21516 0.95187 0.96943 1.02054 1.22093 0.95863 1.00324 0.99078 1.21098 0.91831 0.84421 0.97764 0.91297 1.22085 0.91824 0.95142 1.06142 1.22392 0.81696 0.98073 0.98678 1.86564 1.18290 1.36100 1.96361 0.93057 0.96610 0.96580 0.93547 0.93561 0.91822 0.91806 0.89356 0.89321 0.89058 0.91393 0.91242 0.90618 0.91654 0.91801 0.90872 0.91238 0.90468 0.87742 0.94254 0.94140 0.77923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.92 4.05 -27.88 -0.11 -2.03 16 13 C 0.51 7.40 7.53 -10.99 -0.08 7.31 16 14 O -0.52 -9.44 11.53 5.55 0.06 -9.37 16 15 N -0.62 -6.77 2.97 -165.22 -0.49 -7.26 16 16 C 0.11 0.83 6.35 -3.71 -0.02 0.81 16 17 C -0.14 -0.89 6.08 -26.61 -0.16 -1.05 16 18 C -0.12 -0.74 5.88 -26.69 -0.16 -0.89 16 19 C -0.14 -1.03 4.82 -26.61 -0.13 -1.16 16 20 C 0.15 1.51 3.03 -67.60 -0.20 1.31 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.11 -1.44 3.54 -26.73 -0.09 -1.54 16 23 C 0.07 0.69 6.52 37.15 0.24 0.93 16 24 O -0.57 -6.57 13.66 -35.23 -0.48 -7.05 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.06 7.72 -51.93 -0.40 0.66 16 33 H 0.09 1.08 7.91 -51.93 -0.41 0.67 16 34 H 0.09 0.67 5.93 -51.93 -0.31 0.36 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.46 6.87 -51.93 -0.36 0.10 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.17 7.24 -51.93 -0.38 0.79 16 43 H 0.10 1.66 6.23 -51.93 -0.32 1.34 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.04 0.33 6.84 -51.93 -0.36 -0.03 16 46 H 0.37 2.31 9.12 45.56 0.42 2.73 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -35.11 357.13 -8.91 -44.03 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.57 Total: -1.35 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.53 Total: -14.35 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.25 Total: -34.39 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.42 Total: -16.42 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.11 -8.91 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.344 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds